Wall clock time and date at job start Tue Mar 31 2020 15:49:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86800 * 119.99952 * 2 1 4 4 H 1.48503 * 109.47235 * 240.00402 * 3 2 1 5 5 H 1.48497 * 109.47161 * 0.02562 * 3 2 1 6 6 H 1.48496 * 109.46938 * 120.00521 * 3 2 1 7 7 C 1.38809 * 119.99988 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00020 * 157.94690 * 7 2 1 9 9 N 1.36938 * 119.99945 * 337.93835 * 7 2 1 10 10 C 1.46502 * 120.00314 * 324.92710 * 9 7 2 11 11 C 1.53002 * 109.47196 * 270.00008 * 10 9 7 12 12 C 1.52995 * 109.47058 * 179.97438 * 11 10 9 13 13 N 1.46502 * 109.46923 * 179.97438 * 12 11 10 14 14 C 1.34775 * 119.99877 * 179.72591 * 13 12 11 15 15 O 1.21715 * 120.00294 * 0.27944 * 14 13 12 16 16 C 1.46442 * 119.99744 * 180.27558 * 14 13 12 17 17 S 1.75830 * 125.46525 * 0.02925 * 16 14 13 18 18 C 1.70609 * 91.58510 * 179.97438 * 17 16 14 19 19 C 1.33766 * 111.00216 * 359.97438 * 18 17 16 20 20 C 1.36793 * 125.45884 * 179.71723 * 16 14 13 21 21 Cl 1.73599 * 123.38221 * 0.02562 * 20 16 14 22 22 C 1.46501 * 119.99884 * 144.92154 * 9 7 2 23 23 C 1.53000 * 117.49938 * 3.24493 * 22 9 7 24 24 C 1.52997 * 117.49971 * 294.58133 * 22 9 7 25 25 H 0.97001 * 120.00312 * 355.76022 * 1 2 3 26 26 H 1.08994 * 109.47420 * 149.99680 * 10 9 7 27 27 H 1.09006 * 109.46631 * 29.99627 * 10 9 7 28 28 H 1.09005 * 109.46784 * 59.99746 * 11 10 9 29 29 H 1.09002 * 109.46655 * 299.99728 * 11 10 9 30 30 H 1.09005 * 109.47144 * 60.00439 * 12 11 10 31 31 H 1.08996 * 109.47528 * 300.00059 * 12 11 10 32 32 H 0.96999 * 120.00145 * 0.02562 * 13 12 11 33 33 H 1.08003 * 124.49633 * 179.97438 * 18 17 16 34 34 H 1.08001 * 122.45305 * 180.02562 * 19 18 17 35 35 H 1.09007 * 115.54855 * 148.90682 * 22 9 7 36 36 H 1.08997 * 117.49949 * 359.97438 * 23 22 9 37 37 H 1.09001 * 117.50128 * 145.02002 * 23 22 9 38 38 H 1.09006 * 117.49602 * 214.97699 * 24 22 9 39 39 H 1.08997 * 117.50422 * 359.97438 * 24 22 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1039 1.6965 -1.2126 5 1 1.2852 2.7464 0.0006 6 1 3.1040 1.6963 1.2124 7 6 2.0102 -1.2021 -0.0005 8 1 3.0310 -1.2362 -0.3517 9 7 1.4007 -2.3448 0.4444 10 6 0.4455 -2.2814 1.5534 11 6 1.1885 -2.4677 2.8778 12 6 0.1910 -2.4008 4.0359 13 7 0.9024 -2.5798 5.3041 14 6 0.2229 -2.5521 6.4676 15 8 -0.9825 -2.3835 6.4647 16 6 0.9349 -2.7249 7.7356 17 16 2.6667 -2.9762 7.9071 18 6 2.5348 -3.0558 9.6063 19 6 1.2647 -2.9006 9.9963 20 6 0.3601 -2.7108 8.9768 21 17 -1.3404 -2.4808 9.2394 22 6 1.7038 -3.6308 -0.1887 23 6 2.7654 -3.6430 -1.2904 24 6 1.2873 -3.8147 -1.6493 25 1 -0.4850 0.8377 0.0621 26 1 -0.2969 -3.0712 1.4391 27 1 -0.0521 -1.3116 1.5492 28 1 1.9310 -1.6778 2.9921 29 1 1.6862 -3.4375 2.8819 30 1 -0.5516 -3.1905 3.9219 31 1 -0.3063 -1.4310 4.0317 32 1 1.8631 -2.7139 5.3065 33 1 3.3664 -3.2108 10.2778 34 1 0.9712 -2.9191 11.0355 35 1 1.6464 -4.5015 0.4646 36 1 3.2381 -2.6943 -1.5444 37 1 3.4061 -4.5220 -1.3622 38 1 0.9561 -4.8066 -1.9571 39 1 0.7873 -2.9792 -2.1392 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001689989442.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:49:15 Heat of formation + Delta-G solvation = 20.643180 kcal Electronic energy + Delta-G solvation = -22533.312345 eV Core-core repulsion = 19015.434134 eV Total energy + Delta-G solvation = -3517.878211 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 328.075 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.86659 -39.01447 -38.75237 -37.09708 -36.65864 -35.27227 -33.40844 -31.64420 -30.45946 -27.36026 -26.09620 -24.91848 -23.06660 -22.56493 -22.40309 -21.46392 -20.49207 -19.63698 -18.26606 -17.48462 -17.27148 -16.88051 -16.70587 -16.47759 -15.95781 -15.78681 -15.26452 -14.76845 -14.51327 -14.41525 -14.35076 -13.98604 -13.71715 -13.64481 -13.20639 -12.73835 -12.60638 -12.53575 -12.46920 -12.33132 -12.25437 -12.03616 -11.86625 -11.80549 -11.43733 -11.28648 -11.09222 -10.86817 -10.44406 -10.29948 -9.89803 -9.52584 -8.52441 -7.77988 -5.43520 -0.71580 0.11178 0.70934 1.17589 1.40641 1.46067 1.48740 1.54728 2.00353 2.04223 2.50893 3.16491 3.42822 3.51387 3.67254 3.97763 4.11272 4.17743 4.28672 4.33848 4.47328 4.55984 4.60921 4.66145 4.77051 4.89406 4.93704 4.96381 4.99541 5.09079 5.12001 5.34449 5.37977 5.47716 5.56515 5.70245 5.87262 6.38974 6.46409 7.05928 7.16818 7.87779 8.37003 9.12436 Molecular weight = 328.08amu Principal moments of inertia in cm(-1) A = 0.015087 B = 0.002734 C = 0.002663 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1855.517267 B =10240.276564 C =10513.495846 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.914 5.914 2 C -0.036 4.036 3 Si 0.950 3.050 4 H -0.277 1.277 5 H -0.298 1.298 6 H -0.275 1.275 7 C -0.258 4.258 8 H 0.063 0.937 9 N -0.569 5.569 10 C 0.148 3.852 11 C -0.122 4.122 12 C 0.136 3.864 13 N -0.712 5.712 14 C 0.577 3.423 15 O -0.556 6.556 16 C -0.307 4.307 17 S 0.295 5.705 18 C -0.200 4.200 19 C -0.158 4.158 20 C 0.008 3.992 21 Cl -0.038 7.038 22 C 0.102 3.898 23 C -0.180 4.180 24 C -0.223 4.223 25 H 0.249 0.751 26 H 0.030 0.970 27 H 0.068 0.932 28 H 0.055 0.945 29 H 0.072 0.928 30 H 0.065 0.935 31 H 0.048 0.952 32 H 0.408 0.592 33 H 0.218 0.782 34 H 0.175 0.825 35 H 0.115 0.885 36 H 0.074 0.926 37 H 0.112 0.888 38 H 0.100 0.900 39 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.566 -9.314 20.562 24.143 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.558 5.558 2 C -0.234 4.234 3 Si 0.778 3.222 4 H -0.203 1.203 5 H -0.224 1.224 6 H -0.201 1.201 7 C -0.389 4.389 8 H 0.081 0.919 9 N -0.286 5.286 10 C 0.022 3.978 11 C -0.162 4.162 12 C 0.012 3.988 13 N -0.364 5.364 14 C 0.364 3.636 15 O -0.436 6.436 16 C -0.428 4.428 17 S 0.562 5.438 18 C -0.338 4.338 19 C -0.188 4.188 20 C -0.036 4.036 21 Cl -0.009 7.009 22 C -0.006 4.006 23 C -0.218 4.218 24 C -0.264 4.264 25 H 0.059 0.941 26 H 0.049 0.951 27 H 0.086 0.914 28 H 0.073 0.927 29 H 0.091 0.909 30 H 0.083 0.917 31 H 0.066 0.934 32 H 0.244 0.756 33 H 0.235 0.765 34 H 0.193 0.807 35 H 0.133 0.867 36 H 0.092 0.908 37 H 0.130 0.870 38 H 0.119 0.881 39 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 8.661 -9.132 19.487 23.198 hybrid contribution -1.121 1.323 0.650 1.852 sum 7.539 -7.809 20.136 22.876 Atomic orbital electron populations 1.70168 1.06755 1.26287 1.52630 1.25747 0.95494 1.01331 1.00790 0.85617 0.77999 0.80081 0.78478 1.20262 1.22392 1.20108 1.19219 0.94312 0.86570 1.38751 0.91916 1.43611 1.49182 1.02009 1.33785 1.20751 0.90717 1.01577 0.84775 1.22104 0.98112 1.01937 0.94082 1.21180 0.95189 1.00891 0.81575 1.45834 1.11819 1.73261 1.05437 1.17204 0.86566 0.76783 0.83058 1.90860 1.14902 1.50428 1.87372 1.24531 1.01307 1.20813 0.96130 1.83055 0.96977 1.63141 1.00646 1.25744 1.01995 1.04915 1.01169 1.19938 0.91361 1.06445 1.01010 1.20749 0.87735 1.02069 0.93023 1.98396 1.11412 1.94699 1.96421 1.21562 1.01493 0.89811 0.87700 1.23036 0.91625 1.02292 1.04814 1.23280 0.98102 1.00763 1.04251 0.94126 0.95130 0.91390 0.92661 0.90938 0.91653 0.93378 0.75561 0.76502 0.80736 0.86744 0.90780 0.86954 0.88141 0.92991 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -52.76 11.33 21.65 0.25 -52.52 16 2 C -0.04 -1.96 4.96 84.86 0.42 -1.54 16 3 Si 0.95 43.74 29.61 68.60 2.03 45.77 16 4 H -0.28 -12.44 7.11 99.48 0.71 -11.73 16 5 H -0.30 -13.97 7.11 99.48 0.71 -13.26 16 6 H -0.28 -12.21 7.11 99.48 0.71 -11.51 16 7 C -0.26 -13.50 8.63 84.03 0.72 -12.77 16 8 H 0.06 3.26 6.55 -2.91 -0.02 3.24 16 9 N -0.57 -26.90 2.78 -678.02 -1.88 -28.78 16 10 C 0.15 6.60 5.34 86.38 0.46 7.06 16 11 C -0.12 -4.29 5.65 30.59 0.17 -4.12 16 12 C 0.14 4.50 5.67 86.38 0.49 4.99 16 13 N -0.71 -19.94 5.55 -467.31 -2.59 -22.53 16 14 C 0.58 17.81 7.78 86.38 0.67 18.48 16 15 O -0.56 -21.44 15.09 -4.40 -0.07 -21.50 16 16 C -0.31 -7.26 6.45 24.07 0.16 -7.11 16 17 S 0.30 3.95 22.15 -56.49 -1.25 2.70 16 18 C -0.20 -1.93 10.92 66.80 0.73 -1.20 16 19 C -0.16 -2.26 10.06 21.10 0.21 -2.05 16 20 C 0.01 0.18 6.40 21.78 0.14 0.32 16 21 Cl -0.04 -1.01 27.24 -2.72 -0.07 -1.08 16 22 C 0.10 4.08 6.56 44.99 0.30 4.38 16 23 C -0.18 -6.53 9.80 30.62 0.30 -6.23 16 24 C -0.22 -8.72 10.36 30.62 0.32 -8.40 16 25 H 0.25 14.12 8.32 -92.71 -0.77 13.35 16 26 H 0.03 1.31 8.07 -2.39 -0.02 1.29 16 27 H 0.07 3.57 5.36 -2.38 -0.01 3.56 16 28 H 0.05 2.07 8.14 -2.38 -0.02 2.06 16 29 H 0.07 2.24 8.14 -2.39 -0.02 2.22 16 30 H 0.07 2.19 8.14 -2.38 -0.02 2.17 16 31 H 0.05 1.82 8.14 -2.39 -0.02 1.80 16 32 H 0.41 9.04 7.58 -92.71 -0.70 8.34 16 33 H 0.22 0.34 8.06 -2.91 -0.02 0.32 16 34 H 0.18 1.70 8.06 -2.91 -0.02 1.67 16 35 H 0.12 3.89 8.14 -2.38 -0.02 3.87 16 36 H 0.07 3.05 6.37 -2.39 -0.02 3.03 16 37 H 0.11 3.23 8.14 -2.39 -0.02 3.21 16 38 H 0.10 3.27 8.14 -2.38 -0.02 3.25 16 39 H 0.05 2.44 8.14 -2.39 -0.02 2.42 16 Total: -1.00 -68.74 357.14 1.87 -66.86 By element: Atomic # 1 Polarization: 18.91 SS G_CDS: 0.38 Total: 19.28 kcal Atomic # 6 Polarization: -13.29 SS G_CDS: 5.09 Total: -8.20 kcal Atomic # 7 Polarization: -99.60 SS G_CDS: -4.23 Total: -103.83 kcal Atomic # 8 Polarization: -21.44 SS G_CDS: -0.07 Total: -21.50 kcal Atomic # 14 Polarization: 43.74 SS G_CDS: 2.03 Total: 45.77 kcal Atomic # 16 Polarization: 3.95 SS G_CDS: -1.25 Total: 2.70 kcal Atomic # 17 Polarization: -1.01 SS G_CDS: -0.07 Total: -1.08 kcal Total: -68.74 1.87 -66.86 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001689989442.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.506 kcal (2) G-P(sol) polarization free energy of solvation -68.738 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.768 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.875 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.863 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.643 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds