Wall clock time and date at job start Tue Mar 31 2020 15:50:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86797 * 119.99836 * 2 1 4 4 H 1.48495 * 109.47385 * 239.99900 * 3 2 1 5 5 H 1.48499 * 109.47463 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.47209 * 119.99794 * 3 2 1 7 7 C 1.38809 * 120.00102 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00201 * 180.02562 * 7 2 1 9 9 N 1.36940 * 119.99672 * 0.02562 * 7 2 1 10 10 C 1.46498 * 119.99670 * 179.97438 * 9 7 2 11 11 C 1.53005 * 109.47314 * 185.42995 * 10 9 7 12 12 H 1.08997 * 109.58017 * 43.93221 * 11 10 9 13 13 C 1.53183 * 109.70687 * 164.29034 * 11 10 9 14 14 C 1.53035 * 109.31655 * 174.49145 * 13 11 10 15 15 C 1.53040 * 109.53788 * 298.63874 * 14 13 11 16 16 C 1.52754 * 109.38499 * 61.23447 * 15 14 13 17 17 N 1.46924 * 109.58313 * 283.65181 * 11 10 9 18 18 C 1.34772 * 120.63566 * 6.43595 * 17 11 10 19 19 O 1.21657 * 119.99632 * 4.19801 * 18 17 11 20 20 C 1.47047 * 120.00308 * 184.19650 * 18 17 11 21 21 C 1.44503 * 123.49100 * 312.45807 * 20 18 17 22 22 C 1.32688 * 113.09907 * 179.73663 * 21 20 18 23 23 S 1.75498 * 110.63059 * 0.22829 * 22 21 20 24 24 C 1.36220 * 123.49022 * 132.63449 * 20 18 17 25 25 Cl 1.73596 * 124.60925 * 0.02562 * 24 20 18 26 26 H 0.97004 * 120.00341 * 0.02562 * 1 2 3 27 27 H 0.96995 * 120.00077 * 0.02562 * 9 7 2 28 28 H 1.08994 * 109.47661 * 65.42745 * 10 9 7 29 29 H 1.09008 * 109.47417 * 305.42875 * 10 9 7 30 30 H 1.09000 * 109.50088 * 294.44378 * 13 11 10 31 31 H 1.08998 * 109.49888 * 54.54133 * 13 11 10 32 32 H 1.09002 * 109.45931 * 58.65183 * 14 13 11 33 33 H 1.08998 * 109.46467 * 178.62675 * 14 13 11 34 34 H 1.09001 * 109.49955 * 181.31444 * 15 14 13 35 35 H 1.09001 * 109.49463 * 301.40927 * 15 14 13 36 36 H 1.09000 * 109.51408 * 185.70801 * 16 15 14 37 37 H 1.09000 * 109.43573 * 65.42483 * 16 15 14 38 38 H 1.08000 * 123.45034 * 359.97438 * 21 20 18 39 39 H 1.07997 * 124.68721 * 180.21091 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 3.1039 1.6965 -1.2124 5 1 1.2852 2.7465 0.0006 6 1 3.1038 1.6965 1.2125 7 6 2.0102 -1.2021 0.0005 8 1 3.0902 -1.2021 0.0010 9 7 1.3255 -2.3880 0.0005 10 6 2.0580 -3.6567 0.0005 11 6 1.0694 -4.8165 -0.1360 12 1 0.3306 -4.5785 -0.9012 13 6 1.8211 -6.0927 -0.5270 14 6 0.8477 -7.2736 -0.5269 15 6 0.2729 -7.4630 0.8787 16 6 -0.4919 -6.2055 1.2874 17 7 0.3931 -5.0409 1.1489 18 6 0.5851 -4.1977 2.1826 19 8 1.2631 -3.1985 2.0345 20 6 -0.0248 -4.4854 3.4893 21 6 -1.4091 -4.8644 3.6570 22 6 -1.7398 -5.0808 4.9237 23 16 -0.3595 -4.8213 5.9761 24 6 0.6557 -4.4188 4.6674 25 17 2.3311 -3.9887 4.8154 26 1 -0.4851 0.8400 -0.0004 27 1 0.3555 -2.3880 -0.0002 28 1 2.6098 -3.7578 0.9351 29 1 2.7556 -3.6736 -0.8369 30 1 2.2478 -5.9730 -1.5228 31 1 2.6194 -6.2792 0.1913 32 1 0.0364 -7.0754 -1.2273 33 1 1.3748 -8.1787 -0.8285 34 1 -0.4024 -8.3187 0.8834 35 1 1.0858 -7.6367 1.5838 36 1 -0.8157 -6.2971 2.3242 37 1 -1.3607 -6.0831 0.6406 38 1 -2.1025 -4.9651 2.8352 39 1 -2.7226 -5.3757 5.2605 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001690480077.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:50:14 Heat of formation + Delta-G solvation = 47.202442 kcal Electronic energy + Delta-G solvation = -24577.884190 eV Core-core repulsion = 21061.157675 eV Total energy + Delta-G solvation = -3516.726515 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 328.075 amu Computer time = 1.69 seconds Orbital eigenvalues (eV) -40.27557 -37.68383 -36.61390 -36.38238 -34.24992 -32.48641 -31.88539 -29.78899 -29.48612 -26.29911 -24.85273 -24.29286 -22.59757 -21.59619 -20.88431 -20.01407 -18.74272 -18.04268 -16.80371 -16.23701 -15.50683 -15.06377 -14.87300 -14.44896 -14.34713 -13.87218 -13.73137 -13.55821 -13.47808 -13.10172 -12.99899 -12.83493 -12.29441 -12.26019 -12.02363 -11.66669 -11.47444 -11.18427 -10.99885 -10.86076 -10.74036 -10.67721 -10.62827 -10.50388 -10.28537 -9.83402 -9.44031 -8.81368 -8.67677 -8.61010 -8.24866 -7.99987 -6.47874 -5.48194 -2.68188 0.71684 1.06131 1.70697 2.12822 2.30550 3.41175 3.54201 3.61201 3.63335 3.65075 4.69947 4.79975 4.82578 4.93332 4.95011 5.11409 5.17628 5.24315 5.44508 5.54510 5.61819 5.68559 5.82730 5.84746 5.86108 5.89534 6.00114 6.03261 6.10791 6.11762 6.20276 6.39311 6.59873 6.74010 6.97642 7.34719 7.92095 7.93577 8.70245 8.89618 9.81586 10.42735 10.77428 11.75958 Molecular weight = 328.08amu Principal moments of inertia in cm(-1) A = 0.010255 B = 0.005622 C = 0.004260 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2729.811311 B = 4978.971650 C = 6571.496519 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.939 5.939 2 C -0.022 4.022 3 Si 0.900 3.100 4 H -0.290 1.290 5 H -0.294 1.294 6 H -0.290 1.290 7 C -0.205 4.205 8 H 0.063 0.937 9 N -0.699 5.699 10 C 0.158 3.842 11 C 0.144 3.856 12 H 0.070 0.930 13 C -0.127 4.127 14 C -0.117 4.117 15 C -0.134 4.134 16 C 0.102 3.898 17 N -0.606 5.606 18 C 0.536 3.464 19 O -0.424 6.424 20 C -0.123 4.123 21 C -0.101 4.101 22 C -0.228 4.228 23 S 0.196 5.804 24 C -0.139 4.139 25 Cl 0.007 6.993 26 H 0.249 0.751 27 H 0.379 0.621 28 H 0.042 0.958 29 H 0.015 0.985 30 H 0.073 0.927 31 H 0.065 0.935 32 H 0.063 0.937 33 H 0.061 0.939 34 H 0.069 0.931 35 H 0.064 0.936 36 H 0.088 0.912 37 H 0.063 0.937 38 H 0.157 0.843 39 H 0.173 0.827 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.804 -19.903 8.977 22.163 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.590 5.590 2 C -0.216 4.216 3 Si 0.733 3.267 4 H -0.217 1.217 5 H -0.220 1.220 6 H -0.217 1.217 7 C -0.337 4.337 8 H 0.081 0.919 9 N -0.341 5.341 10 C 0.030 3.970 11 C 0.041 3.959 12 H 0.088 0.912 13 C -0.166 4.166 14 C -0.155 4.155 15 C -0.172 4.172 16 C -0.022 4.022 17 N -0.344 5.344 18 C 0.319 3.681 19 O -0.292 6.292 20 C -0.142 4.142 21 C -0.131 4.131 22 C -0.363 4.363 23 S 0.459 5.541 24 C -0.285 4.285 25 Cl 0.036 6.964 26 H 0.059 0.941 27 H 0.213 0.787 28 H 0.059 0.941 29 H 0.032 0.968 30 H 0.092 0.908 31 H 0.084 0.916 32 H 0.082 0.918 33 H 0.079 0.921 34 H 0.088 0.912 35 H 0.083 0.917 36 H 0.106 0.894 37 H 0.082 0.918 38 H 0.174 0.826 39 H 0.191 0.809 Dipole moment (debyes) X Y Z Total from point charges -2.892 -19.225 10.472 22.082 hybrid contribution -0.071 1.072 -1.453 1.807 sum -2.963 -18.153 9.019 20.486 Atomic orbital electron populations 1.69644 1.04939 1.24898 1.59530 1.24585 0.95395 0.97110 1.04523 0.86344 0.78457 0.84355 0.77582 1.21706 1.22025 1.21720 1.19094 0.90627 0.84336 1.39639 0.91882 1.42150 1.05234 0.99484 1.87276 1.20935 0.92968 0.85007 0.98064 1.21507 0.95005 0.95284 0.84112 0.91168 1.21910 0.98270 0.94401 1.02005 1.21501 0.99127 0.98201 0.96686 1.21838 1.00350 0.97404 0.97608 1.21802 0.92759 0.85311 1.02305 1.47742 1.47747 1.26556 1.12326 1.17529 0.83847 0.84187 0.82564 1.91301 1.34223 1.22998 1.80631 1.20619 0.94012 1.04900 0.94628 1.21194 0.94076 1.00384 0.97414 1.25453 1.03067 1.11097 0.96673 1.83006 0.98674 1.65349 1.07080 1.25029 0.93569 1.10939 0.98954 1.98403 1.09480 1.91034 1.97507 0.94093 0.78733 0.94087 0.96767 0.90797 0.91639 0.91836 0.92066 0.91231 0.91736 0.89395 0.91838 0.82604 0.80923 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 34. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -30.35 13.06 55.49 0.72 -29.62 16 2 C -0.02 -0.68 5.50 -17.43 -0.10 -0.77 16 3 Si 0.90 24.26 29.55 -169.99 -5.02 19.23 16 4 H -0.29 -7.61 7.11 56.52 0.40 -7.20 16 5 H -0.29 -7.93 7.11 56.52 0.40 -7.53 16 6 H -0.29 -7.80 7.11 56.52 0.40 -7.40 16 7 C -0.20 -6.20 9.82 -15.06 -0.15 -6.34 16 8 H 0.06 1.88 7.83 -52.49 -0.41 1.47 16 9 N -0.70 -19.03 3.34 -59.91 -0.20 -19.23 16 10 C 0.16 3.48 4.92 -4.04 -0.02 3.46 16 11 C 0.14 2.46 2.89 -67.60 -0.20 2.27 16 12 H 0.07 1.26 8.14 -51.93 -0.42 0.83 16 13 C -0.13 -1.67 5.32 -26.62 -0.14 -1.81 16 14 C -0.12 -1.22 5.89 -26.69 -0.16 -1.37 16 15 C -0.13 -1.32 6.06 -26.84 -0.16 -1.48 16 16 C 0.10 1.19 5.55 -3.94 -0.02 1.16 16 17 N -0.61 -9.80 2.98 -166.89 -0.50 -10.30 16 18 C 0.54 10.31 6.87 -12.69 -0.09 10.22 16 19 O -0.42 -10.30 10.42 5.23 0.05 -10.25 16 20 C -0.12 -1.97 5.11 -104.59 -0.53 -2.50 16 21 C -0.10 -1.24 7.89 -39.00 -0.31 -1.55 16 22 C -0.23 -2.26 11.11 28.84 0.32 -1.94 16 23 S 0.20 2.15 23.02 -107.50 -2.47 -0.33 16 24 C -0.14 -2.12 6.86 30.01 0.21 -1.91 16 25 Cl 0.01 0.11 28.27 -51.86 -1.47 -1.35 16 26 H 0.25 7.84 8.31 -40.82 -0.34 7.50 16 27 H 0.38 11.00 7.50 -40.82 -0.31 10.69 16 28 H 0.04 0.99 6.05 -51.93 -0.31 0.68 16 29 H 0.01 0.32 8.05 -51.92 -0.42 -0.10 16 30 H 0.07 0.92 8.14 -51.93 -0.42 0.49 16 31 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 32 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 33 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 34 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 35 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 36 H 0.09 0.94 4.36 -51.93 -0.23 0.71 16 37 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 38 H 0.16 1.67 7.22 -52.49 -0.38 1.29 16 39 H 0.17 1.14 8.06 -52.49 -0.42 0.71 16 LS Contribution 338.26 15.07 5.10 5.10 Total: -1.00 -35.59 338.26 -10.12 -45.72 By element: Atomic # 1 Polarization: 8.59 SS G_CDS: -4.99 Total: 3.60 kcal Atomic # 6 Polarization: -1.23 SS G_CDS: -1.35 Total: -2.58 kcal Atomic # 7 Polarization: -59.17 SS G_CDS: 0.03 Total: -59.15 kcal Atomic # 8 Polarization: -10.30 SS G_CDS: 0.05 Total: -10.25 kcal Atomic # 14 Polarization: 24.26 SS G_CDS: -5.02 Total: 19.23 kcal Atomic # 16 Polarization: 2.15 SS G_CDS: -2.47 Total: -0.33 kcal Atomic # 17 Polarization: 0.11 SS G_CDS: -1.47 Total: -1.35 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -35.59 -10.12 -45.72 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001690480077.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.921 kcal (2) G-P(sol) polarization free energy of solvation -35.594 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.327 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.125 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.718 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.202 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.70 seconds