Wall clock time and date at job start Tue Mar 31 2020 15:50:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86797 * 119.99836 * 2 1 4 4 H 1.48495 * 109.47385 * 239.99900 * 3 2 1 5 5 H 1.48499 * 109.47463 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.47209 * 119.99794 * 3 2 1 7 7 C 1.38809 * 120.00102 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00201 * 180.02562 * 7 2 1 9 9 N 1.36940 * 119.99672 * 0.02562 * 7 2 1 10 10 C 1.46498 * 119.99670 * 179.97438 * 9 7 2 11 11 C 1.53005 * 109.47314 * 185.42995 * 10 9 7 12 12 H 1.08997 * 109.58017 * 43.93221 * 11 10 9 13 13 C 1.53183 * 109.70687 * 164.29034 * 11 10 9 14 14 C 1.53035 * 109.31655 * 174.49145 * 13 11 10 15 15 C 1.53040 * 109.53788 * 298.63874 * 14 13 11 16 16 C 1.52754 * 109.38499 * 61.23447 * 15 14 13 17 17 N 1.46924 * 109.58313 * 283.65181 * 11 10 9 18 18 C 1.34772 * 120.63566 * 6.43595 * 17 11 10 19 19 O 1.21657 * 119.99632 * 4.19801 * 18 17 11 20 20 C 1.47047 * 120.00308 * 184.19650 * 18 17 11 21 21 C 1.44503 * 123.49100 * 312.45807 * 20 18 17 22 22 C 1.32688 * 113.09907 * 179.73663 * 21 20 18 23 23 S 1.75498 * 110.63059 * 0.22829 * 22 21 20 24 24 C 1.36220 * 123.49022 * 132.63449 * 20 18 17 25 25 Cl 1.73596 * 124.60925 * 0.02562 * 24 20 18 26 26 H 0.97004 * 120.00341 * 0.02562 * 1 2 3 27 27 H 0.96995 * 120.00077 * 0.02562 * 9 7 2 28 28 H 1.08994 * 109.47661 * 65.42745 * 10 9 7 29 29 H 1.09008 * 109.47417 * 305.42875 * 10 9 7 30 30 H 1.09000 * 109.50088 * 294.44378 * 13 11 10 31 31 H 1.08998 * 109.49888 * 54.54133 * 13 11 10 32 32 H 1.09002 * 109.45931 * 58.65183 * 14 13 11 33 33 H 1.08998 * 109.46467 * 178.62675 * 14 13 11 34 34 H 1.09001 * 109.49955 * 181.31444 * 15 14 13 35 35 H 1.09001 * 109.49463 * 301.40927 * 15 14 13 36 36 H 1.09000 * 109.51408 * 185.70801 * 16 15 14 37 37 H 1.09000 * 109.43573 * 65.42483 * 16 15 14 38 38 H 1.08000 * 123.45034 * 359.97438 * 21 20 18 39 39 H 1.07997 * 124.68721 * 180.21091 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 3.1039 1.6965 -1.2124 5 1 1.2852 2.7465 0.0006 6 1 3.1038 1.6965 1.2125 7 6 2.0102 -1.2021 0.0005 8 1 3.0902 -1.2021 0.0010 9 7 1.3255 -2.3880 0.0005 10 6 2.0580 -3.6567 0.0005 11 6 1.0694 -4.8165 -0.1360 12 1 0.3306 -4.5785 -0.9012 13 6 1.8211 -6.0927 -0.5270 14 6 0.8477 -7.2736 -0.5269 15 6 0.2729 -7.4630 0.8787 16 6 -0.4919 -6.2055 1.2874 17 7 0.3931 -5.0409 1.1489 18 6 0.5851 -4.1977 2.1826 19 8 1.2631 -3.1985 2.0345 20 6 -0.0248 -4.4854 3.4893 21 6 -1.4091 -4.8644 3.6570 22 6 -1.7398 -5.0808 4.9237 23 16 -0.3595 -4.8213 5.9761 24 6 0.6557 -4.4188 4.6674 25 17 2.3311 -3.9887 4.8154 26 1 -0.4851 0.8400 -0.0004 27 1 0.3555 -2.3880 -0.0002 28 1 2.6098 -3.7578 0.9351 29 1 2.7556 -3.6736 -0.8369 30 1 2.2478 -5.9730 -1.5228 31 1 2.6194 -6.2792 0.1913 32 1 0.0364 -7.0754 -1.2273 33 1 1.3748 -8.1787 -0.8285 34 1 -0.4024 -8.3187 0.8834 35 1 1.0858 -7.6367 1.5838 36 1 -0.8157 -6.2971 2.3242 37 1 -1.3607 -6.0831 0.6406 38 1 -2.1025 -4.9651 2.8352 39 1 -2.7226 -5.3757 5.2605 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001690480077.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:50:12 Heat of formation + Delta-G solvation = 23.988581 kcal Electronic energy + Delta-G solvation = -24578.890818 eV Core-core repulsion = 21061.157675 eV Total energy + Delta-G solvation = -3517.733143 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 328.075 amu Computer time = 1.64 seconds Orbital eigenvalues (eV) -41.58765 -38.79619 -37.89704 -37.54655 -36.17093 -33.70235 -33.60822 -31.51402 -30.55563 -27.78704 -26.33172 -25.50145 -24.33843 -22.82361 -22.17467 -21.04044 -19.97290 -19.31425 -18.73294 -17.46768 -16.84179 -16.68000 -16.18611 -15.96316 -15.45333 -15.25855 -15.07943 -14.81865 -14.62105 -14.55964 -14.27066 -14.08182 -13.88069 -13.56539 -13.43481 -13.12058 -12.78037 -12.76693 -12.55501 -12.19324 -12.10966 -12.06250 -11.91454 -11.82692 -11.70834 -11.43657 -11.34241 -10.87676 -10.05044 -9.79715 -9.43068 -9.33207 -8.67316 -7.83722 -5.02895 -0.33537 0.07514 0.73977 1.09809 1.24326 1.40907 1.46213 1.51204 2.12255 2.25749 2.61088 3.48691 3.63878 3.83683 3.91408 3.98046 4.08994 4.14734 4.27613 4.35932 4.42971 4.50676 4.63878 4.71085 4.79834 4.86723 4.97620 5.00047 5.07426 5.12058 5.14480 5.16295 5.25660 5.33035 5.50098 5.53658 5.85943 6.37617 6.61657 7.43044 7.51424 8.24763 8.48276 9.41054 Molecular weight = 328.08amu Principal moments of inertia in cm(-1) A = 0.010255 B = 0.005622 C = 0.004260 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2729.811311 B = 4978.971650 C = 6571.496519 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.973 5.973 2 C -0.084 4.084 3 Si 0.965 3.035 4 H -0.276 1.276 5 H -0.293 1.293 6 H -0.291 1.291 7 C -0.209 4.209 8 H 0.058 0.942 9 N -0.704 5.704 10 C 0.161 3.839 11 C 0.149 3.851 12 H 0.062 0.938 13 C -0.119 4.119 14 C -0.112 4.112 15 C -0.127 4.127 16 C 0.093 3.907 17 N -0.603 5.603 18 C 0.532 3.468 19 O -0.494 6.494 20 C -0.147 4.147 21 C -0.119 4.119 22 C -0.200 4.200 23 S 0.255 5.745 24 C -0.170 4.170 25 Cl -0.019 7.019 26 H 0.244 0.756 27 H 0.367 0.633 28 H 0.021 0.979 29 H 0.012 0.988 30 H 0.081 0.919 31 H 0.057 0.943 32 H 0.070 0.930 33 H 0.084 0.916 34 H 0.104 0.896 35 H 0.056 0.944 36 H 0.102 0.898 37 H 0.077 0.923 38 H 0.171 0.829 39 H 0.218 0.782 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.473 -22.471 9.833 25.132 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.626 5.626 2 C -0.275 4.275 3 Si 0.795 3.205 4 H -0.203 1.203 5 H -0.219 1.219 6 H -0.218 1.218 7 C -0.342 4.342 8 H 0.076 0.924 9 N -0.344 5.344 10 C 0.035 3.965 11 C 0.045 3.955 12 H 0.080 0.920 13 C -0.158 4.158 14 C -0.150 4.150 15 C -0.165 4.165 16 C -0.028 4.028 17 N -0.339 5.339 18 C 0.317 3.683 19 O -0.367 6.367 20 C -0.167 4.167 21 C -0.147 4.147 22 C -0.336 4.336 23 S 0.519 5.481 24 C -0.316 4.316 25 Cl 0.009 6.991 26 H 0.053 0.947 27 H 0.198 0.802 28 H 0.039 0.961 29 H 0.030 0.970 30 H 0.099 0.901 31 H 0.076 0.924 32 H 0.089 0.911 33 H 0.103 0.897 34 H 0.122 0.878 35 H 0.075 0.925 36 H 0.120 0.880 37 H 0.096 0.904 38 H 0.189 0.811 39 H 0.235 0.765 Dipole moment (debyes) X Y Z Total from point charges -4.555 -21.883 11.322 25.056 hybrid contribution 0.410 1.732 -1.599 2.393 sum -4.145 -20.150 9.724 22.754 Atomic orbital electron populations 1.69809 1.06282 1.25154 1.61384 1.25341 0.96352 1.00339 1.05473 0.85317 0.77235 0.80186 0.77745 1.20260 1.21931 1.21801 1.19413 0.90646 0.85911 1.38251 0.92360 1.42201 1.04592 1.00408 1.87192 1.20946 0.93890 0.85138 0.96561 1.21352 0.94118 0.95327 0.84662 0.91987 1.21862 0.98429 0.93549 1.01975 1.21501 0.98710 0.97414 0.97353 1.21829 1.00524 0.97351 0.96845 1.22169 0.92604 0.84251 1.03786 1.47896 1.47587 1.27253 1.11141 1.18140 0.82604 0.83494 0.84086 1.91256 1.37541 1.25806 1.82076 1.20640 0.96064 1.06796 0.93174 1.21228 0.92382 1.02002 0.99111 1.25994 1.04293 1.07855 0.95410 1.82828 0.97341 1.63181 1.04733 1.25451 0.93146 1.12036 1.00953 1.98385 1.11628 1.91411 1.97643 0.94681 0.80191 0.96125 0.97032 0.90078 0.92387 0.91092 0.89724 0.87788 0.92533 0.87990 0.90434 0.81140 0.76522 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 39. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -64.97 13.06 21.65 0.28 -64.68 16 2 C -0.08 -5.37 5.50 84.86 0.47 -4.90 16 3 Si 0.96 51.39 29.55 68.60 2.03 53.42 16 4 H -0.28 -13.97 7.11 99.48 0.71 -13.26 16 5 H -0.29 -15.44 7.11 99.48 0.71 -14.73 16 6 H -0.29 -15.37 7.11 99.48 0.71 -14.66 16 7 C -0.21 -13.19 9.82 84.03 0.83 -12.36 16 8 H 0.06 3.63 7.83 -2.91 -0.02 3.61 16 9 N -0.70 -40.25 3.34 -343.45 -1.15 -41.40 16 10 C 0.16 7.49 4.92 86.38 0.42 7.92 16 11 C 0.15 5.19 2.89 44.97 0.13 5.32 16 12 H 0.06 2.26 8.14 -2.39 -0.02 2.25 16 13 C -0.12 -3.04 5.32 30.67 0.16 -2.88 16 14 C -0.11 -1.99 5.89 30.62 0.18 -1.81 16 15 C -0.13 -2.10 6.06 30.53 0.19 -1.92 16 16 C 0.09 1.98 5.55 86.22 0.48 2.46 16 17 N -0.60 -19.58 2.98 -800.14 -2.38 -21.97 16 18 C 0.53 21.16 6.87 86.55 0.59 21.75 16 19 O -0.49 -25.47 10.42 -4.21 -0.04 -25.51 16 20 C -0.15 -4.68 5.11 -19.84 -0.10 -4.78 16 21 C -0.12 -2.63 7.89 22.70 0.18 -2.45 16 22 C -0.20 -3.16 11.11 66.65 0.74 -2.42 16 23 S 0.26 4.94 23.02 -56.49 -1.30 3.63 16 24 C -0.17 -5.15 6.86 67.35 0.46 -4.68 16 25 Cl -0.02 -0.66 28.27 -2.72 -0.08 -0.73 16 26 H 0.24 15.84 8.31 -92.71 -0.77 15.07 16 27 H 0.37 22.38 7.50 -92.71 -0.69 21.68 16 28 H 0.02 1.08 6.05 -2.39 -0.01 1.06 16 29 H 0.01 0.55 8.05 -2.38 -0.02 0.53 16 30 H 0.08 1.94 8.14 -2.39 -0.02 1.92 16 31 H 0.06 1.56 8.14 -2.39 -0.02 1.54 16 32 H 0.07 1.20 8.14 -2.39 -0.02 1.18 16 33 H 0.08 1.18 8.14 -2.39 -0.02 1.16 16 34 H 0.10 1.09 8.14 -2.39 -0.02 1.07 16 35 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16 36 H 0.10 1.91 4.36 -2.39 -0.01 1.90 16 37 H 0.08 1.46 8.14 -2.39 -0.02 1.44 16 38 H 0.17 3.19 7.22 -2.91 -0.02 3.17 16 39 H 0.22 1.51 8.06 -2.91 -0.02 1.48 16 Total: -1.00 -83.04 338.26 2.48 -80.57 By element: Atomic # 1 Polarization: 17.05 SS G_CDS: 0.39 Total: 17.44 kcal Atomic # 6 Polarization: -5.49 SS G_CDS: 4.73 Total: -0.76 kcal Atomic # 7 Polarization: -124.80 SS G_CDS: -3.25 Total: -128.05 kcal Atomic # 8 Polarization: -25.47 SS G_CDS: -0.04 Total: -25.51 kcal Atomic # 14 Polarization: 51.39 SS G_CDS: 2.03 Total: 53.42 kcal Atomic # 16 Polarization: 4.94 SS G_CDS: -1.30 Total: 3.63 kcal Atomic # 17 Polarization: -0.66 SS G_CDS: -0.08 Total: -0.73 kcal Total: -83.04 2.48 -80.57 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001690480077.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.558 kcal (2) G-P(sol) polarization free energy of solvation -83.045 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.513 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.476 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.569 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.989 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.64 seconds