Wall clock time and date at job start Tue Mar 31 2020 15:35:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86796 * 120.00368 * 2 1 4 4 H 1.48500 * 109.47567 * 270.00585 * 3 2 1 5 5 H 1.48506 * 109.46900 * 30.00471 * 3 2 1 6 6 H 1.48497 * 109.47096 * 150.00213 * 3 2 1 7 7 C 1.38813 * 119.99634 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00395 * 359.97438 * 7 2 1 9 9 N 1.36943 * 119.99926 * 180.02562 * 7 2 1 10 10 C 1.46499 * 120.00069 * 179.97438 * 9 7 2 11 11 C 1.52999 * 109.47113 * 179.97438 * 10 9 7 12 12 H 1.08998 * 110.05499 * 53.58416 * 11 10 9 13 13 C 1.54267 * 110.03137 * 292.16661 * 11 10 9 14 14 C 1.54891 * 104.19324 * 217.10706 * 13 11 10 15 15 C 1.54888 * 102.75120 * 37.94011 * 14 13 11 16 16 C 1.53876 * 110.03160 * 175.00078 * 11 10 9 17 17 H 1.08998 * 110.02768 * 238.57174 * 16 11 10 18 18 N 1.46503 * 110.03171 * 359.94772 * 16 11 10 19 19 C 1.34772 * 120.00026 * 205.00037 * 18 16 11 20 20 O 1.21637 * 119.99924 * 0.02562 * 19 18 16 21 21 C 1.47154 * 120.00236 * 180.02562 * 19 18 16 22 22 C 1.36048 * 123.46514 * 0.03308 * 21 19 18 23 23 S 1.70441 * 110.83287 * 180.02562 * 22 21 19 24 24 C 1.75507 * 92.45856 * 359.97438 * 23 22 21 25 25 C 1.32846 * 110.57710 * 359.71716 * 24 23 22 26 26 Cl 1.73595 * 123.47082 * 180.24668 * 25 24 23 27 27 H 0.97006 * 119.99566 * 359.97438 * 1 2 3 28 28 H 0.96997 * 119.99863 * 359.97438 * 9 7 2 29 29 H 1.08998 * 109.47203 * 59.99455 * 10 9 7 30 30 H 1.08998 * 109.46781 * 299.99945 * 10 9 7 31 31 H 1.09004 * 110.48597 * 335.78345 * 13 11 10 32 32 H 1.08994 * 110.48679 * 98.42871 * 13 11 10 33 33 H 1.09005 * 110.75269 * 279.62515 * 14 13 11 34 34 H 1.09004 * 110.91555 * 156.33330 * 14 13 11 35 35 H 1.09000 * 110.48622 * 203.37816 * 15 14 13 36 36 H 1.09001 * 110.59737 * 80.79460 * 15 14 13 37 37 H 0.96995 * 119.99741 * 25.00617 * 18 16 11 38 38 H 1.08004 * 124.58181 * 359.97438 * 22 21 19 39 39 H 1.07998 * 124.71214 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 2.4977 2.0465 -1.4000 5 1 1.4477 2.6526 0.7002 6 1 3.5478 1.4400 0.7000 7 6 2.0102 -1.2022 -0.0005 8 1 1.4701 -2.1375 -0.0005 9 7 3.3796 -1.2023 0.0000 10 6 4.1120 -2.4710 0.0000 11 6 5.6163 -2.1915 0.0000 12 1 5.8727 -1.5256 0.8239 13 6 6.0359 -1.5573 -1.3422 14 6 7.4269 -2.1727 -1.6346 15 6 7.2648 -3.6328 -1.1440 16 6 6.3976 -3.5111 0.1260 17 1 7.0332 -3.4856 1.0111 18 7 5.4668 -4.6394 0.2094 19 6 5.8479 -5.7845 0.8094 20 8 6.9646 -5.8810 1.2820 21 6 4.9133 -6.9180 0.8927 22 6 3.6501 -6.8874 0.3883 23 16 2.8518 -8.3681 0.6627 24 6 4.2462 -9.0556 1.4771 25 6 5.2447 -8.1801 1.5128 26 17 6.7867 -8.5154 2.2362 27 1 -0.4850 0.8401 0.0004 28 1 3.8646 -0.3623 0.0004 29 1 3.8490 -3.0424 -0.8901 30 1 3.8483 -3.0427 0.8898 31 1 5.3283 -1.8234 -2.1276 32 1 6.1105 -0.4742 -1.2456 33 1 8.2035 -1.6587 -1.0679 34 1 7.6478 -2.1459 -2.7017 35 1 8.2362 -4.0643 -0.9028 36 1 6.7568 -4.2360 -1.8965 37 1 4.5763 -4.5623 -0.1673 38 1 3.2121 -6.0392 -0.1169 39 1 4.2885 -10.0537 1.8875 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001699022754.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:35:30 Heat of formation + Delta-G solvation = 3.719790 kcal Electronic energy + Delta-G solvation = -23346.082307 eV Core-core repulsion = 19827.470243 eV Total energy + Delta-G solvation = -3518.612064 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 328.075 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.29758 -38.50416 -37.19769 -36.01399 -34.58794 -33.66978 -31.61360 -30.25059 -29.05045 -27.53610 -25.13766 -24.69578 -22.25235 -21.85180 -20.60915 -19.53738 -19.27365 -18.45555 -17.53298 -17.33723 -15.88425 -15.48278 -15.11332 -15.00210 -14.48738 -14.24824 -13.95073 -13.67237 -13.62021 -13.45254 -13.16059 -13.11754 -12.73228 -12.30069 -11.86132 -11.73547 -11.66064 -11.60268 -11.02277 -10.98671 -10.93463 -10.89503 -10.55694 -10.54513 -10.38411 -10.09591 -9.78340 -9.65598 -9.27396 -9.03484 -8.91513 -8.61808 -7.30969 -5.83688 -3.19578 0.43376 0.98839 1.41763 1.57080 2.40606 3.16323 3.27678 3.33142 3.35961 3.41458 4.34702 4.52913 4.55004 4.71329 4.84905 4.97982 5.00833 5.10176 5.27870 5.43600 5.48797 5.52574 5.54677 5.63105 5.64922 5.73395 5.76303 5.84739 5.97546 6.05796 6.18665 6.27931 6.39385 6.48297 6.59422 6.66054 7.53543 7.90435 8.24657 8.35126 9.13840 9.86488 10.06160 11.34511 Molecular weight = 328.08amu Principal moments of inertia in cm(-1) A = 0.013121 B = 0.003587 C = 0.002975 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2133.518002 B = 7803.478352 C = 9410.142934 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C 0.007 3.993 3 Si 0.884 3.116 4 H -0.283 1.283 5 H -0.290 1.290 6 H -0.277 1.277 7 C -0.248 4.248 8 H 0.089 0.911 9 N -0.752 5.752 10 C 0.161 3.839 11 C -0.113 4.113 12 H 0.082 0.918 13 C -0.115 4.115 14 C -0.124 4.124 15 C -0.132 4.132 16 C 0.152 3.848 17 H 0.092 0.908 18 N -0.716 5.716 19 C 0.573 3.427 20 O -0.524 6.524 21 C -0.149 4.149 22 C -0.202 4.202 23 S 0.238 5.762 24 C -0.243 4.243 25 C -0.006 4.006 26 Cl -0.021 7.021 27 H 0.260 0.740 28 H 0.362 0.638 29 H 0.024 0.976 30 H 0.029 0.971 31 H 0.074 0.926 32 H 0.066 0.934 33 H 0.066 0.934 34 H 0.066 0.934 35 H 0.068 0.932 36 H 0.069 0.931 37 H 0.405 0.595 38 H 0.181 0.819 39 H 0.178 0.822 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.554 -17.129 -0.838 20.678 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.189 4.189 3 Si 0.714 3.286 4 H -0.210 1.210 5 H -0.217 1.217 6 H -0.203 1.203 7 C -0.378 4.378 8 H 0.107 0.893 9 N -0.397 5.397 10 C 0.033 3.967 11 C -0.132 4.132 12 H 0.101 0.899 13 C -0.153 4.153 14 C -0.162 4.162 15 C -0.170 4.170 16 C 0.047 3.953 17 H 0.110 0.890 18 N -0.370 5.370 19 C 0.358 3.642 20 O -0.402 6.402 21 C -0.167 4.167 22 C -0.341 4.341 23 S 0.503 5.497 24 C -0.379 4.379 25 C -0.045 4.045 26 Cl 0.008 6.992 27 H 0.070 0.930 28 H 0.195 0.805 29 H 0.042 0.958 30 H 0.047 0.953 31 H 0.093 0.907 32 H 0.085 0.915 33 H 0.085 0.915 34 H 0.085 0.915 35 H 0.087 0.913 36 H 0.088 0.912 37 H 0.243 0.757 38 H 0.198 0.802 39 H 0.195 0.805 Dipole moment (debyes) X Y Z Total from point charges 10.806 -17.850 -0.766 20.880 hybrid contribution 1.505 1.872 0.251 2.415 sum 12.311 -15.977 -0.515 20.177 Atomic orbital electron populations 1.69699 1.05123 1.25925 1.57269 1.24661 0.95220 0.97246 1.01804 0.86556 0.79268 0.84942 0.77821 1.20995 1.21685 1.20299 1.19020 0.80569 0.94694 1.43469 0.89309 1.42668 1.03984 1.02052 1.91029 1.20668 0.88176 0.89806 0.98016 1.22279 0.96538 0.95409 0.98971 0.89917 1.22405 0.96149 0.99943 0.96822 1.22476 0.97625 0.95273 1.00799 1.22764 0.99972 0.97242 0.97043 1.21624 0.90299 0.84315 0.99048 0.88981 1.46224 1.18443 1.13248 1.59045 1.17441 0.86445 0.81964 0.78369 1.90821 1.20373 1.82065 1.46896 1.19997 0.95081 0.95466 1.06188 1.25777 0.98198 1.05101 1.05000 1.83226 1.13049 1.02664 1.50798 1.25452 0.97168 1.05056 1.10190 1.20629 0.89869 0.93257 1.00734 1.98393 1.25644 1.94494 1.80676 0.92995 0.80507 0.95791 0.95300 0.90726 0.91546 0.91522 0.91510 0.91294 0.91225 0.75658 0.80158 0.80455 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.61 13.97 55.49 0.78 -27.84 16 2 C 0.01 0.19 5.50 -17.43 -0.10 0.10 16 3 Si 0.88 21.62 27.74 -169.99 -4.71 16.91 16 4 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 5 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 6 H -0.28 -6.38 6.52 56.52 0.37 -6.01 16 7 C -0.25 -6.74 10.47 -15.06 -0.16 -6.90 16 8 H 0.09 2.56 8.06 -52.48 -0.42 2.13 16 9 N -0.75 -16.97 5.25 -59.91 -0.31 -17.28 16 10 C 0.16 2.84 4.19 -4.04 -0.02 2.83 16 11 C -0.11 -1.64 2.96 -89.50 -0.27 -1.90 16 12 H 0.08 1.24 8.14 -51.93 -0.42 0.82 16 13 C -0.12 -1.55 6.08 -25.07 -0.15 -1.70 16 14 C -0.12 -1.38 6.91 -24.74 -0.17 -1.55 16 15 C -0.13 -1.56 6.53 -25.08 -0.16 -1.72 16 16 C 0.15 2.02 3.22 -66.81 -0.22 1.81 16 17 H 0.09 1.31 7.56 -51.93 -0.39 0.92 16 18 N -0.72 -9.46 4.36 -53.88 -0.23 -9.69 16 19 C 0.57 8.28 7.79 -12.64 -0.10 8.18 16 20 O -0.52 -8.89 14.71 5.24 0.08 -8.81 16 21 C -0.15 -1.87 5.98 -104.61 -0.63 -2.49 16 22 C -0.20 -2.06 10.38 29.95 0.31 -1.75 16 23 S 0.24 1.90 23.02 -107.50 -2.47 -0.57 16 24 C -0.24 -2.18 11.00 28.88 0.32 -1.87 16 25 C -0.01 -0.07 6.49 -38.98 -0.25 -0.33 16 26 Cl -0.02 -0.26 27.24 -51.86 -1.41 -1.68 16 27 H 0.26 7.62 8.31 -40.82 -0.34 7.28 16 28 H 0.36 8.07 5.41 -40.82 -0.22 7.85 16 29 H 0.02 0.41 7.11 -51.93 -0.37 0.05 16 30 H 0.03 0.53 7.42 -51.93 -0.39 0.15 16 31 H 0.07 1.07 7.76 -51.93 -0.40 0.67 16 32 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 33 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 34 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 35 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 36 H 0.07 0.82 8.05 -51.93 -0.42 0.40 16 37 H 0.40 5.01 4.39 -40.82 -0.18 4.83 16 38 H 0.18 1.62 7.01 -52.48 -0.37 1.25 16 39 H 0.18 1.16 8.06 -52.49 -0.42 0.73 16 LS Contribution 344.38 15.07 5.19 5.19 Total: -1.00 -32.35 344.38 -9.56 -41.91 By element: Atomic # 1 Polarization: 14.02 SS G_CDS: -4.86 Total: 9.16 kcal Atomic # 6 Polarization: -5.70 SS G_CDS: -1.59 Total: -7.29 kcal Atomic # 7 Polarization: -55.04 SS G_CDS: 0.23 Total: -54.82 kcal Atomic # 8 Polarization: -8.89 SS G_CDS: 0.08 Total: -8.81 kcal Atomic # 14 Polarization: 21.62 SS G_CDS: -4.71 Total: 16.91 kcal Atomic # 16 Polarization: 1.90 SS G_CDS: -2.47 Total: -0.57 kcal Atomic # 17 Polarization: -0.26 SS G_CDS: -1.41 Total: -1.68 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -32.35 -9.56 -41.91 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699022754.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.627 kcal (2) G-P(sol) polarization free energy of solvation -32.347 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.280 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.560 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.907 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.720 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds