Wall clock time and date at job start Tue Mar 31 2020 15:35:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86796 * 120.00368 * 2 1 4 4 H 1.48500 * 109.47567 * 270.00585 * 3 2 1 5 5 H 1.48506 * 109.46900 * 30.00471 * 3 2 1 6 6 H 1.48497 * 109.47096 * 150.00213 * 3 2 1 7 7 C 1.38813 * 119.99634 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00395 * 359.97438 * 7 2 1 9 9 N 1.36943 * 119.99926 * 180.02562 * 7 2 1 10 10 C 1.46499 * 120.00069 * 179.97438 * 9 7 2 11 11 C 1.52999 * 109.47113 * 179.97438 * 10 9 7 12 12 H 1.08998 * 110.05499 * 53.58416 * 11 10 9 13 13 C 1.54267 * 110.03137 * 292.16661 * 11 10 9 14 14 C 1.54891 * 104.19324 * 217.10706 * 13 11 10 15 15 C 1.54888 * 102.75120 * 37.94011 * 14 13 11 16 16 C 1.53876 * 110.03160 * 175.00078 * 11 10 9 17 17 H 1.08998 * 110.02768 * 238.57174 * 16 11 10 18 18 N 1.46503 * 110.03171 * 359.94772 * 16 11 10 19 19 C 1.34772 * 120.00026 * 205.00037 * 18 16 11 20 20 O 1.21637 * 119.99924 * 0.02562 * 19 18 16 21 21 C 1.47154 * 120.00236 * 180.02562 * 19 18 16 22 22 C 1.36048 * 123.46514 * 0.03308 * 21 19 18 23 23 S 1.70441 * 110.83287 * 180.02562 * 22 21 19 24 24 C 1.75507 * 92.45856 * 359.97438 * 23 22 21 25 25 C 1.32846 * 110.57710 * 359.71716 * 24 23 22 26 26 Cl 1.73595 * 123.47082 * 180.24668 * 25 24 23 27 27 H 0.97006 * 119.99566 * 359.97438 * 1 2 3 28 28 H 0.96997 * 119.99863 * 359.97438 * 9 7 2 29 29 H 1.08998 * 109.47203 * 59.99455 * 10 9 7 30 30 H 1.08998 * 109.46781 * 299.99945 * 10 9 7 31 31 H 1.09004 * 110.48597 * 335.78345 * 13 11 10 32 32 H 1.08994 * 110.48679 * 98.42871 * 13 11 10 33 33 H 1.09005 * 110.75269 * 279.62515 * 14 13 11 34 34 H 1.09004 * 110.91555 * 156.33330 * 14 13 11 35 35 H 1.09000 * 110.48622 * 203.37816 * 15 14 13 36 36 H 1.09001 * 110.59737 * 80.79460 * 15 14 13 37 37 H 0.96995 * 119.99741 * 25.00617 * 18 16 11 38 38 H 1.08004 * 124.58181 * 359.97438 * 22 21 19 39 39 H 1.07998 * 124.71214 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 2.4977 2.0465 -1.4000 5 1 1.4477 2.6526 0.7002 6 1 3.5478 1.4400 0.7000 7 6 2.0102 -1.2022 -0.0005 8 1 1.4701 -2.1375 -0.0005 9 7 3.3796 -1.2023 0.0000 10 6 4.1120 -2.4710 0.0000 11 6 5.6163 -2.1915 0.0000 12 1 5.8727 -1.5256 0.8239 13 6 6.0359 -1.5573 -1.3422 14 6 7.4269 -2.1727 -1.6346 15 6 7.2648 -3.6328 -1.1440 16 6 6.3976 -3.5111 0.1260 17 1 7.0332 -3.4856 1.0111 18 7 5.4668 -4.6394 0.2094 19 6 5.8479 -5.7845 0.8094 20 8 6.9646 -5.8810 1.2820 21 6 4.9133 -6.9180 0.8927 22 6 3.6501 -6.8874 0.3883 23 16 2.8518 -8.3681 0.6627 24 6 4.2462 -9.0556 1.4771 25 6 5.2447 -8.1801 1.5128 26 17 6.7867 -8.5154 2.2362 27 1 -0.4850 0.8401 0.0004 28 1 3.8646 -0.3623 0.0004 29 1 3.8490 -3.0424 -0.8901 30 1 3.8483 -3.0427 0.8898 31 1 5.3283 -1.8234 -2.1276 32 1 6.1105 -0.4742 -1.2456 33 1 8.2035 -1.6587 -1.0679 34 1 7.6478 -2.1459 -2.7017 35 1 8.2362 -4.0643 -0.9028 36 1 6.7568 -4.2360 -1.8965 37 1 4.5763 -4.5623 -0.1673 38 1 3.2121 -6.0392 -0.1169 39 1 4.2885 -10.0537 1.8875 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001699022754.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:35:29 Heat of formation + Delta-G solvation = -16.490589 kcal Electronic energy + Delta-G solvation = -23346.958695 eV Core-core repulsion = 19827.470243 eV Total energy + Delta-G solvation = -3519.488452 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 328.075 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.37430 -39.55226 -38.17268 -36.90439 -36.35272 -34.73693 -33.55881 -31.10419 -30.53141 -28.54345 -26.40663 -25.90308 -23.96415 -22.84441 -21.60502 -20.66624 -20.43709 -19.69742 -19.02794 -18.27359 -16.98929 -16.71345 -16.38666 -16.07059 -15.97752 -15.57818 -15.22517 -14.92879 -14.63332 -14.58748 -14.40557 -14.24106 -13.86938 -13.60293 -13.48341 -12.90875 -12.80696 -12.56571 -12.48737 -12.34788 -12.08845 -11.95186 -11.82094 -11.76090 -11.72446 -11.57261 -11.46675 -10.96768 -10.86963 -10.15036 -9.98671 -9.38258 -9.29078 -8.01967 -5.35084 -0.37513 0.25263 0.63830 0.68500 1.39155 1.41506 1.48769 1.59316 2.13948 2.24134 2.49184 3.30133 3.33413 3.59422 3.66425 3.78259 3.89602 4.00107 4.24427 4.32633 4.36216 4.47606 4.48313 4.52596 4.60667 4.74551 4.75853 4.82910 4.89659 4.97284 5.08047 5.22047 5.22235 5.32154 5.48196 5.54305 5.76388 6.21557 6.47229 7.08587 7.17663 7.84558 8.03149 9.19159 Molecular weight = 328.08amu Principal moments of inertia in cm(-1) A = 0.013121 B = 0.003587 C = 0.002975 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2133.518002 B = 7803.478352 C = 9410.142934 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.982 5.982 2 C -0.061 4.061 3 Si 0.949 3.051 4 H -0.276 1.276 5 H -0.299 1.299 6 H -0.253 1.253 7 C -0.233 4.233 8 H 0.062 0.938 9 N -0.754 5.754 10 C 0.160 3.840 11 C -0.105 4.105 12 H 0.080 0.920 13 C -0.115 4.115 14 C -0.113 4.113 15 C -0.125 4.125 16 C 0.155 3.845 17 H 0.082 0.918 18 N -0.712 5.712 19 C 0.570 3.430 20 O -0.557 6.557 21 C -0.178 4.178 22 C -0.210 4.210 23 S 0.308 5.692 24 C -0.233 4.233 25 C -0.034 4.034 26 Cl -0.039 7.039 27 H 0.257 0.743 28 H 0.366 0.634 29 H 0.035 0.965 30 H 0.024 0.976 31 H 0.065 0.935 32 H 0.067 0.933 33 H 0.077 0.923 34 H 0.082 0.918 35 H 0.069 0.931 36 H 0.070 0.930 37 H 0.408 0.592 38 H 0.188 0.812 39 H 0.203 0.797 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.415 -17.528 -1.511 21.533 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.632 5.632 2 C -0.252 4.252 3 Si 0.777 3.223 4 H -0.202 1.202 5 H -0.226 1.226 6 H -0.178 1.178 7 C -0.364 4.364 8 H 0.080 0.920 9 N -0.400 5.400 10 C 0.034 3.966 11 C -0.124 4.124 12 H 0.098 0.902 13 C -0.153 4.153 14 C -0.150 4.150 15 C -0.164 4.164 16 C 0.050 3.950 17 H 0.100 0.900 18 N -0.366 5.366 19 C 0.356 3.644 20 O -0.436 6.436 21 C -0.196 4.196 22 C -0.348 4.348 23 S 0.574 5.426 24 C -0.370 4.370 25 C -0.073 4.073 26 Cl -0.010 7.010 27 H 0.066 0.934 28 H 0.199 0.801 29 H 0.053 0.947 30 H 0.042 0.958 31 H 0.084 0.916 32 H 0.086 0.914 33 H 0.096 0.904 34 H 0.101 0.899 35 H 0.088 0.912 36 H 0.089 0.911 37 H 0.247 0.753 38 H 0.206 0.794 39 H 0.220 0.780 Dipole moment (debyes) X Y Z Total from point charges 11.705 -18.276 -1.449 21.752 hybrid contribution 1.112 1.831 0.454 2.190 sum 12.818 -16.446 -0.995 20.874 Atomic orbital electron populations 1.69871 1.07060 1.26606 1.59710 1.25441 0.96023 1.01068 1.02694 0.85490 0.78676 0.79967 0.78173 1.20218 1.22582 1.17805 1.19046 0.82575 0.93588 1.41181 0.91987 1.42680 1.02484 1.03993 1.90829 1.20816 0.89932 0.87847 0.98024 1.22189 0.94134 0.96192 0.99873 0.90151 1.22392 0.97334 1.00060 0.95539 1.22433 0.96418 0.94186 1.01991 1.22709 0.99569 0.98001 0.96123 1.21587 0.90197 0.83698 0.99550 0.90006 1.46195 1.18526 1.13081 1.58796 1.17779 0.86420 0.82521 0.77702 1.90792 1.21771 1.82710 1.48366 1.19927 0.95745 0.95411 1.08503 1.26008 0.97803 1.06780 1.04254 1.83057 1.10964 1.00113 1.48474 1.25854 0.96762 1.05654 1.08689 1.20747 0.90068 0.93931 1.02513 1.98376 1.27020 1.94525 1.81091 0.93403 0.80088 0.94747 0.95804 0.91612 0.91389 0.90414 0.89908 0.91230 0.91101 0.75291 0.79432 0.77957 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.98 -61.34 13.97 21.65 0.30 -61.03 16 2 C -0.06 -3.46 5.50 84.86 0.47 -3.00 16 3 Si 0.95 44.23 27.74 68.60 1.90 46.13 16 4 H -0.28 -12.47 7.11 99.48 0.71 -11.76 16 5 H -0.30 -14.27 7.11 99.48 0.71 -13.56 16 6 H -0.25 -10.67 6.52 99.48 0.65 -10.03 16 7 C -0.23 -12.69 10.47 84.03 0.88 -11.81 16 8 H 0.06 3.65 8.06 -2.91 -0.02 3.62 16 9 N -0.75 -33.19 5.25 -343.45 -1.80 -34.99 16 10 C 0.16 5.50 4.19 86.38 0.36 5.87 16 11 C -0.10 -2.89 2.96 -10.07 -0.03 -2.92 16 12 H 0.08 2.28 8.14 -2.39 -0.02 2.26 16 13 C -0.12 -2.84 6.08 31.67 0.19 -2.65 16 14 C -0.11 -2.20 6.91 31.89 0.22 -1.98 16 15 C -0.13 -2.76 6.53 31.67 0.21 -2.55 16 16 C 0.15 3.98 3.22 45.71 0.15 4.13 16 17 H 0.08 2.31 7.56 -2.39 -0.02 2.29 16 18 N -0.71 -18.55 4.36 -442.62 -1.93 -20.48 16 19 C 0.57 16.52 7.79 86.59 0.67 17.19 16 20 O -0.56 -19.19 14.71 -4.15 -0.06 -19.25 16 21 C -0.18 -4.37 5.98 -19.86 -0.12 -4.49 16 22 C -0.21 -3.99 10.38 67.31 0.70 -3.29 16 23 S 0.31 4.14 23.02 -56.49 -1.30 2.84 16 24 C -0.23 -3.72 11.00 66.64 0.73 -2.99 16 25 C -0.03 -0.79 6.49 22.68 0.15 -0.65 16 26 Cl -0.04 -0.99 27.24 -2.72 -0.07 -1.06 16 27 H 0.26 15.38 8.31 -92.70 -0.77 14.61 16 28 H 0.37 15.53 5.41 -92.71 -0.50 15.03 16 29 H 0.03 1.14 7.11 -2.39 -0.02 1.12 16 30 H 0.02 0.86 7.42 -2.39 -0.02 0.84 16 31 H 0.07 1.75 7.76 -2.38 -0.02 1.73 16 32 H 0.07 1.67 8.14 -2.39 -0.02 1.65 16 33 H 0.08 1.38 8.14 -2.38 -0.02 1.36 16 34 H 0.08 1.40 8.14 -2.38 -0.02 1.38 16 35 H 0.07 1.55 8.14 -2.39 -0.02 1.53 16 36 H 0.07 1.55 8.05 -2.39 -0.02 1.53 16 37 H 0.41 9.87 4.39 -92.71 -0.41 9.46 16 38 H 0.19 3.15 7.01 -2.91 -0.02 3.13 16 39 H 0.20 2.07 8.06 -2.91 -0.02 2.04 16 Total: -1.00 -70.48 344.38 1.74 -68.74 By element: Atomic # 1 Polarization: 28.12 SS G_CDS: 0.13 Total: 28.24 kcal Atomic # 6 Polarization: -13.71 SS G_CDS: 4.58 Total: -9.13 kcal Atomic # 7 Polarization: -113.07 SS G_CDS: -3.43 Total: -116.50 kcal Atomic # 8 Polarization: -19.19 SS G_CDS: -0.06 Total: -19.25 kcal Atomic # 14 Polarization: 44.23 SS G_CDS: 1.90 Total: 46.13 kcal Atomic # 16 Polarization: 4.14 SS G_CDS: -1.30 Total: 2.84 kcal Atomic # 17 Polarization: -0.99 SS G_CDS: -0.07 Total: -1.06 kcal Total: -70.48 1.74 -68.74 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699022754.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.248 kcal (2) G-P(sol) polarization free energy of solvation -70.483 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.235 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.744 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.739 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.491 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds