Wall clock time and date at job start Tue Mar 31 2020 15:35:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86800 * 120.00259 * 2 1 4 4 H 1.48501 * 109.47055 * 0.02562 * 3 2 1 5 5 H 1.48505 * 109.46653 * 119.99764 * 3 2 1 6 6 H 1.48495 * 109.47483 * 240.00126 * 3 2 1 7 7 C 1.38816 * 119.99569 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99460 * 180.02562 * 7 2 1 9 9 N 1.36935 * 120.00401 * 0.02562 * 7 2 1 10 10 C 1.46490 * 120.00121 * 180.02562 * 9 7 2 11 11 C 1.53001 * 109.47264 * 179.97438 * 10 9 7 12 12 H 1.09002 * 110.01216 * 54.29966 * 11 10 9 13 13 C 1.54262 * 110.03126 * 292.90636 * 11 10 9 14 14 C 1.54965 * 104.15911 * 217.13226 * 13 11 10 15 15 C 1.54888 * 102.77803 * 37.89093 * 14 13 11 16 16 C 1.53879 * 110.03323 * 175.68624 * 11 10 9 17 17 H 1.08999 * 110.02966 * 0.02562 * 16 11 10 18 18 N 1.46497 * 110.03035 * 238.57097 * 16 11 10 19 19 C 1.34783 * 119.99516 * 155.00412 * 18 16 11 20 20 O 1.21637 * 120.00167 * 0.02562 * 19 18 16 21 21 C 1.47164 * 119.99473 * 179.97438 * 19 18 16 22 22 C 1.36041 * 123.46958 * 359.70097 * 21 19 18 23 23 S 1.70446 * 110.82963 * 179.85735 * 22 21 19 24 24 C 1.75500 * 92.45674 * 0.35022 * 23 22 21 25 25 C 1.32841 * 110.57979 * 359.80068 * 24 23 22 26 26 Cl 1.73602 * 123.46717 * 180.02562 * 25 24 23 27 27 H 0.97001 * 119.99885 * 179.97438 * 1 2 3 28 28 H 0.97000 * 119.99302 * 359.97438 * 9 7 2 29 29 H 1.09003 * 109.47433 * 299.99456 * 10 9 7 30 30 H 1.08999 * 109.47686 * 59.99159 * 10 9 7 31 31 H 1.08996 * 110.48825 * 335.78142 * 13 11 10 32 32 H 1.08999 * 110.48577 * 98.42783 * 13 11 10 33 33 H 1.09000 * 110.72226 * 279.57513 * 14 13 11 34 34 H 1.09007 * 110.76427 * 156.22182 * 14 13 11 35 35 H 1.09002 * 110.49015 * 203.40644 * 15 14 13 36 36 H 1.08996 * 110.48810 * 80.75906 * 15 14 13 37 37 H 0.96998 * 120.00369 * 334.99899 * 18 16 11 38 38 H 1.07997 * 124.58453 * 359.96771 * 22 21 19 39 39 H 1.08004 * 124.70503 * 179.83718 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 1.2853 2.7465 0.0006 5 1 3.1040 1.6962 1.2126 6 1 3.1040 1.6964 -1.2124 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0001 9 7 1.3256 -2.3881 -0.0016 10 6 2.0580 -3.6568 -0.0016 11 6 1.0637 -4.8197 -0.0022 12 1 0.3674 -4.7147 -0.8342 13 6 0.2911 -4.8551 1.3325 14 6 0.1263 -6.3659 1.6352 15 6 1.4765 -6.9593 1.1620 16 6 1.8169 -6.1571 -0.1110 17 1 2.8908 -5.9777 -0.1628 18 7 1.3714 -6.8888 -1.2994 19 6 2.1866 -7.7917 -1.8798 20 8 3.2920 -7.9993 -1.4167 21 6 1.7387 -8.5270 -3.0733 22 6 0.5163 -8.3558 -3.6453 23 16 0.3384 -9.3635 -5.0084 24 6 1.9426 -10.0462 -4.8071 25 6 2.5497 -9.5096 -3.7544 26 17 4.1530 -9.9439 -3.2496 27 1 -0.4850 -0.8401 -0.0004 28 1 0.3556 -2.3880 -0.0016 29 1 2.6853 -3.7142 -0.8912 30 1 2.6841 -3.7150 0.8887 31 1 0.8672 -4.3690 2.1198 32 1 -0.6832 -4.3789 1.2220 33 1 -0.7016 -6.7857 1.0638 34 1 -0.0159 -6.5328 2.7030 35 1 1.3667 -8.0182 0.9277 36 1 2.2445 -6.8134 1.9216 37 1 0.4897 -6.7235 -1.6685 38 1 -0.2385 -7.6723 -3.2854 39 1 2.3761 -10.7979 -5.4501 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001699022755.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:35:34 Heat of formation + Delta-G solvation = -6.839733 kcal Electronic energy + Delta-G solvation = -22962.834173 eV Core-core repulsion = 19443.764214 eV Total energy + Delta-G solvation = -3519.069959 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 328.075 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.29097 -38.49961 -37.28644 -36.12213 -34.77702 -33.56049 -31.42054 -30.35076 -28.39926 -27.67688 -25.35026 -24.12784 -22.54746 -21.82364 -20.44305 -20.08656 -19.26283 -18.44615 -17.42130 -17.14419 -16.26710 -15.44853 -15.29544 -14.94539 -14.47568 -14.28604 -13.78331 -13.70722 -13.57994 -13.53319 -13.26757 -13.23911 -13.09217 -12.15839 -11.90051 -11.73990 -11.55282 -11.30809 -11.00755 -10.93038 -10.77526 -10.74233 -10.55421 -10.49047 -10.30298 -9.97680 -9.84100 -9.41655 -9.21100 -9.02400 -8.86787 -8.75442 -6.99342 -6.09932 -3.09018 0.27287 0.84043 1.25194 1.44749 2.29012 3.04821 3.16993 3.52901 3.56396 3.73605 4.19155 4.53869 4.66956 4.74608 4.75756 4.84905 4.94456 5.00771 5.37167 5.39340 5.45442 5.52498 5.58250 5.65305 5.73428 5.78351 5.82545 5.98211 6.03286 6.11148 6.19384 6.38172 6.51479 6.53519 6.70487 6.82461 7.42504 7.82520 8.15155 8.76743 9.23958 10.10303 10.25449 11.38826 Molecular weight = 328.08amu Principal moments of inertia in cm(-1) A = 0.015025 B = 0.002717 C = 0.002639 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1863.127258 B =10301.454276 C =10608.797368 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.945 5.945 2 C -0.046 4.046 3 Si 1.080 2.920 4 H -0.285 1.285 5 H -0.295 1.295 6 H -0.295 1.295 7 C -0.330 4.330 8 H 0.064 0.936 9 N -0.742 5.742 10 C 0.167 3.833 11 C -0.104 4.104 12 H 0.075 0.925 13 C -0.113 4.113 14 C -0.125 4.125 15 C -0.130 4.130 16 C 0.148 3.852 17 H 0.096 0.904 18 N -0.713 5.713 19 C 0.571 3.429 20 O -0.517 6.517 21 C -0.144 4.144 22 C -0.207 4.207 23 S 0.231 5.769 24 C -0.239 4.239 25 C -0.007 4.007 26 Cl -0.017 7.017 27 H 0.254 0.746 28 H 0.366 0.634 29 H 0.019 0.981 30 H 0.023 0.977 31 H 0.074 0.926 32 H 0.066 0.934 33 H 0.061 0.939 34 H 0.065 0.935 35 H 0.065 0.935 36 H 0.075 0.925 37 H 0.396 0.604 38 H 0.179 0.821 39 H 0.179 0.821 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.574 -24.175 -8.261 25.596 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.591 5.591 2 C -0.243 4.243 3 Si 0.910 3.090 4 H -0.210 1.210 5 H -0.223 1.223 6 H -0.223 1.223 7 C -0.461 4.461 8 H 0.082 0.918 9 N -0.387 5.387 10 C 0.039 3.961 11 C -0.123 4.123 12 H 0.093 0.907 13 C -0.151 4.151 14 C -0.162 4.162 15 C -0.168 4.168 16 C 0.044 3.956 17 H 0.114 0.886 18 N -0.364 5.364 19 C 0.356 3.644 20 O -0.394 6.394 21 C -0.163 4.163 22 C -0.346 4.346 23 S 0.495 5.505 24 C -0.375 4.375 25 C -0.046 4.046 26 Cl 0.012 6.988 27 H 0.065 0.935 28 H 0.200 0.800 29 H 0.037 0.963 30 H 0.041 0.959 31 H 0.093 0.907 32 H 0.085 0.915 33 H 0.080 0.920 34 H 0.084 0.916 35 H 0.084 0.916 36 H 0.094 0.906 37 H 0.230 0.770 38 H 0.196 0.804 39 H 0.196 0.804 Dipole moment (debyes) X Y Z Total from point charges -1.675 -22.916 -8.912 24.645 hybrid contribution 0.719 -1.350 0.821 1.736 sum -0.957 -24.267 -8.091 25.598 Atomic orbital electron populations 1.70894 1.06010 1.28276 1.53923 1.25768 0.97059 1.00957 1.00525 0.83244 0.74216 0.75585 0.75906 1.21037 1.22254 1.22274 1.20047 0.92072 0.85851 1.48131 0.91804 1.42321 1.04802 1.00850 1.90761 1.20666 0.92750 0.84587 0.98087 1.22243 0.97898 0.93615 0.98566 0.90678 1.22393 1.00420 0.95307 0.96938 1.22551 0.96893 0.96099 1.00706 1.22743 0.97837 0.99236 0.97022 1.21670 1.00373 0.90211 0.83372 0.88644 1.46020 1.18801 1.41172 1.30413 1.17432 0.84919 0.79655 0.82429 1.90854 1.19846 1.64819 1.63847 1.20052 0.94181 1.01759 1.00260 1.25682 1.00876 1.05824 1.02189 1.83159 1.11427 1.31884 1.23990 1.25443 1.00043 1.08617 1.03400 1.20666 0.89947 0.97944 0.96042 1.98407 1.18549 1.91293 1.90531 0.93518 0.80040 0.96310 0.95887 0.90726 0.91488 0.92001 0.91643 0.91577 0.90642 0.76951 0.80407 0.80360 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -29.26 13.70 55.49 0.76 -28.50 16 2 C -0.05 -1.35 5.50 -17.43 -0.10 -1.44 16 3 Si 1.08 26.21 29.92 -169.99 -5.09 21.13 16 4 H -0.28 -6.99 7.11 56.52 0.40 -6.58 16 5 H -0.30 -6.86 7.11 56.52 0.40 -6.46 16 6 H -0.30 -6.87 7.11 56.52 0.40 -6.47 16 7 C -0.33 -9.47 9.99 -15.06 -0.15 -9.62 16 8 H 0.06 1.82 7.83 -52.49 -0.41 1.41 16 9 N -0.74 -18.71 5.44 -59.91 -0.33 -19.03 16 10 C 0.17 3.41 5.31 -4.05 -0.02 3.39 16 11 C -0.10 -1.61 2.73 -89.50 -0.24 -1.85 16 12 H 0.07 1.14 7.62 -51.93 -0.40 0.75 16 13 C -0.11 -1.64 6.05 -25.03 -0.15 -1.79 16 14 C -0.12 -1.46 6.91 -24.70 -0.17 -1.63 16 15 C -0.13 -1.61 6.54 -25.07 -0.16 -1.78 16 16 C 0.15 2.06 2.90 -66.81 -0.19 1.87 16 17 H 0.10 1.54 7.10 -51.93 -0.37 1.17 16 18 N -0.71 -8.68 5.00 -53.87 -0.27 -8.95 16 19 C 0.57 7.86 7.79 -12.63 -0.10 7.76 16 20 O -0.52 -8.80 14.71 5.24 0.08 -8.72 16 21 C -0.14 -1.62 5.98 -104.61 -0.63 -2.25 16 22 C -0.21 -1.65 10.38 29.94 0.31 -1.34 16 23 S 0.23 1.42 23.02 -107.50 -2.47 -1.06 16 24 C -0.24 -1.88 11.00 28.87 0.32 -1.56 16 25 C -0.01 -0.08 6.49 -38.99 -0.25 -0.33 16 26 Cl -0.02 -0.20 27.24 -51.86 -1.41 -1.62 16 27 H 0.25 7.68 6.77 -40.82 -0.28 7.40 16 28 H 0.37 9.30 6.36 -40.82 -0.26 9.04 16 29 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 30 H 0.02 0.49 8.02 -51.93 -0.42 0.07 16 31 H 0.07 1.21 7.77 -51.93 -0.40 0.81 16 32 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 33 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 34 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 35 H 0.07 0.82 8.04 -51.93 -0.42 0.40 16 36 H 0.07 0.95 8.14 -51.93 -0.42 0.52 16 37 H 0.40 3.82 6.82 -40.82 -0.28 3.54 16 38 H 0.18 1.00 7.01 -52.49 -0.37 0.64 16 39 H 0.18 0.98 8.06 -52.48 -0.42 0.56 16 LS Contribution 350.03 15.07 5.27 5.27 Total: -1.00 -34.24 350.03 -9.92 -44.17 By element: Atomic # 1 Polarization: 12.81 SS G_CDS: -4.93 Total: 7.88 kcal Atomic # 6 Polarization: -9.03 SS G_CDS: -1.54 Total: -10.57 kcal Atomic # 7 Polarization: -56.64 SS G_CDS: 0.17 Total: -56.48 kcal Atomic # 8 Polarization: -8.80 SS G_CDS: 0.08 Total: -8.72 kcal Atomic # 14 Polarization: 26.21 SS G_CDS: -5.09 Total: 21.13 kcal Atomic # 16 Polarization: 1.42 SS G_CDS: -2.47 Total: -1.06 kcal Atomic # 17 Polarization: -0.20 SS G_CDS: -1.41 Total: -1.62 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -34.24 -9.92 -44.17 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699022755.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.327 kcal (2) G-P(sol) polarization free energy of solvation -34.243 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.085 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.924 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.167 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.840 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds