Wall clock time and date at job start Tue Mar 31 2020 15:35:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86800 * 120.00259 * 2 1 4 4 H 1.48501 * 109.47055 * 0.02562 * 3 2 1 5 5 H 1.48505 * 109.46653 * 119.99764 * 3 2 1 6 6 H 1.48495 * 109.47483 * 240.00126 * 3 2 1 7 7 C 1.38816 * 119.99569 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99460 * 180.02562 * 7 2 1 9 9 N 1.36935 * 120.00401 * 0.02562 * 7 2 1 10 10 C 1.46490 * 120.00121 * 180.02562 * 9 7 2 11 11 C 1.53001 * 109.47264 * 179.97438 * 10 9 7 12 12 H 1.09002 * 110.01216 * 54.29966 * 11 10 9 13 13 C 1.54262 * 110.03126 * 292.90636 * 11 10 9 14 14 C 1.54965 * 104.15911 * 217.13226 * 13 11 10 15 15 C 1.54888 * 102.77803 * 37.89093 * 14 13 11 16 16 C 1.53879 * 110.03323 * 175.68624 * 11 10 9 17 17 H 1.08999 * 110.02966 * 0.02562 * 16 11 10 18 18 N 1.46497 * 110.03035 * 238.57097 * 16 11 10 19 19 C 1.34783 * 119.99516 * 155.00412 * 18 16 11 20 20 O 1.21637 * 120.00167 * 0.02562 * 19 18 16 21 21 C 1.47164 * 119.99473 * 179.97438 * 19 18 16 22 22 C 1.36041 * 123.46958 * 359.70097 * 21 19 18 23 23 S 1.70446 * 110.82963 * 179.85735 * 22 21 19 24 24 C 1.75500 * 92.45674 * 0.35022 * 23 22 21 25 25 C 1.32841 * 110.57979 * 359.80068 * 24 23 22 26 26 Cl 1.73602 * 123.46717 * 180.02562 * 25 24 23 27 27 H 0.97001 * 119.99885 * 179.97438 * 1 2 3 28 28 H 0.97000 * 119.99302 * 359.97438 * 9 7 2 29 29 H 1.09003 * 109.47433 * 299.99456 * 10 9 7 30 30 H 1.08999 * 109.47686 * 59.99159 * 10 9 7 31 31 H 1.08996 * 110.48825 * 335.78142 * 13 11 10 32 32 H 1.08999 * 110.48577 * 98.42783 * 13 11 10 33 33 H 1.09000 * 110.72226 * 279.57513 * 14 13 11 34 34 H 1.09007 * 110.76427 * 156.22182 * 14 13 11 35 35 H 1.09002 * 110.49015 * 203.40644 * 15 14 13 36 36 H 1.08996 * 110.48810 * 80.75906 * 15 14 13 37 37 H 0.96998 * 120.00369 * 334.99899 * 18 16 11 38 38 H 1.07997 * 124.58453 * 359.96771 * 22 21 19 39 39 H 1.08004 * 124.70503 * 179.83718 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 1.2853 2.7465 0.0006 5 1 3.1040 1.6962 1.2126 6 1 3.1040 1.6964 -1.2124 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0001 9 7 1.3256 -2.3881 -0.0016 10 6 2.0580 -3.6568 -0.0016 11 6 1.0637 -4.8197 -0.0022 12 1 0.3674 -4.7147 -0.8342 13 6 0.2911 -4.8551 1.3325 14 6 0.1263 -6.3659 1.6352 15 6 1.4765 -6.9593 1.1620 16 6 1.8169 -6.1571 -0.1110 17 1 2.8908 -5.9777 -0.1628 18 7 1.3714 -6.8888 -1.2994 19 6 2.1866 -7.7917 -1.8798 20 8 3.2920 -7.9993 -1.4167 21 6 1.7387 -8.5270 -3.0733 22 6 0.5163 -8.3558 -3.6453 23 16 0.3384 -9.3635 -5.0084 24 6 1.9426 -10.0462 -4.8071 25 6 2.5497 -9.5096 -3.7544 26 17 4.1530 -9.9439 -3.2496 27 1 -0.4850 -0.8401 -0.0004 28 1 0.3556 -2.3880 -0.0016 29 1 2.6853 -3.7142 -0.8912 30 1 2.6841 -3.7150 0.8887 31 1 0.8672 -4.3690 2.1198 32 1 -0.6832 -4.3789 1.2220 33 1 -0.7016 -6.7857 1.0638 34 1 -0.0159 -6.5328 2.7030 35 1 1.3667 -8.0182 0.9277 36 1 2.2445 -6.8134 1.9216 37 1 0.4897 -6.7235 -1.6685 38 1 -0.2385 -7.6723 -3.2854 39 1 2.3761 -10.7979 -5.4501 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001699022755.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:35:33 Heat of formation + Delta-G solvation = -29.138069 kcal Electronic energy + Delta-G solvation = -22963.801101 eV Core-core repulsion = 19443.764214 eV Total energy + Delta-G solvation = -3520.036888 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 328.075 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -41.32545 -39.56998 -38.21074 -36.92264 -36.66263 -34.70824 -33.27984 -31.09195 -30.03177 -28.73063 -26.35980 -25.80616 -24.25280 -22.81614 -21.52513 -21.19944 -20.19882 -19.55501 -19.01778 -18.17199 -17.44668 -16.83682 -16.27515 -16.18539 -15.73513 -15.58220 -15.44943 -15.02006 -14.81900 -14.52264 -14.40764 -14.36133 -13.87252 -13.54228 -12.88931 -12.72874 -12.64719 -12.57926 -12.50754 -12.48906 -12.01648 -11.90457 -11.84971 -11.83015 -11.77418 -11.57050 -11.27729 -10.95806 -10.87586 -10.19389 -10.01409 -9.38103 -9.13797 -8.42542 -5.36075 -0.38305 0.23987 0.62511 0.66341 1.57452 1.58417 1.66943 1.83884 2.07237 2.21742 2.69063 3.34775 3.38009 3.56890 3.59593 3.78580 3.86005 4.00153 4.23686 4.29840 4.32958 4.37753 4.42871 4.53839 4.57137 4.68764 4.72160 4.82297 4.90902 4.92228 4.99238 5.08834 5.17985 5.25990 5.41453 5.53162 5.55885 6.47908 6.48887 7.07342 7.17527 7.97296 8.08791 9.09864 Molecular weight = 328.08amu Principal moments of inertia in cm(-1) A = 0.015025 B = 0.002717 C = 0.002639 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1863.127258 B =10301.454276 C =10608.797368 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.971 5.971 2 C -0.099 4.099 3 Si 1.127 2.873 4 H -0.289 1.289 5 H -0.279 1.279 6 H -0.279 1.279 7 C -0.341 4.341 8 H 0.060 0.940 9 N -0.750 5.750 10 C 0.167 3.833 11 C -0.090 4.090 12 H 0.083 0.917 13 C -0.111 4.111 14 C -0.109 4.109 15 C -0.123 4.123 16 C 0.156 3.844 17 H 0.068 0.932 18 N -0.703 5.703 19 C 0.568 3.432 20 O -0.561 6.561 21 C -0.180 4.180 22 C -0.202 4.202 23 S 0.317 5.683 24 C -0.237 4.237 25 C -0.038 4.038 26 Cl -0.044 7.044 27 H 0.246 0.754 28 H 0.364 0.636 29 H 0.006 0.994 30 H 0.015 0.985 31 H 0.052 0.948 32 H 0.065 0.935 33 H 0.083 0.917 34 H 0.079 0.921 35 H 0.072 0.928 36 H 0.071 0.929 37 H 0.410 0.590 38 H 0.202 0.798 39 H 0.200 0.800 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.256 -25.239 -9.467 27.152 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.619 5.619 2 C -0.290 4.290 3 Si 0.951 3.049 4 H -0.215 1.215 5 H -0.205 1.205 6 H -0.206 1.206 7 C -0.472 4.472 8 H 0.078 0.922 9 N -0.395 5.395 10 C 0.040 3.960 11 C -0.109 4.109 12 H 0.101 0.899 13 C -0.149 4.149 14 C -0.147 4.147 15 C -0.162 4.162 16 C 0.050 3.950 17 H 0.086 0.914 18 N -0.356 5.356 19 C 0.354 3.646 20 O -0.441 6.441 21 C -0.199 4.199 22 C -0.341 4.341 23 S 0.582 5.418 24 C -0.373 4.373 25 C -0.076 4.076 26 Cl -0.016 7.016 27 H 0.056 0.944 28 H 0.197 0.803 29 H 0.024 0.976 30 H 0.033 0.967 31 H 0.071 0.929 32 H 0.084 0.916 33 H 0.101 0.899 34 H 0.098 0.902 35 H 0.090 0.910 36 H 0.089 0.911 37 H 0.247 0.753 38 H 0.219 0.781 39 H 0.217 0.783 Dipole moment (debyes) X Y Z Total from point charges -3.372 -24.023 -10.133 26.290 hybrid contribution 1.169 -1.080 1.077 1.922 sum -2.203 -25.104 -9.056 26.778 Atomic orbital electron populations 1.70994 1.06951 1.27969 1.55953 1.27178 0.97172 1.04427 1.00272 0.82645 0.73446 0.71724 0.77082 1.21463 1.20517 1.20561 1.20374 0.92239 0.87354 1.47225 0.92217 1.42446 1.04842 1.01551 1.90627 1.20752 0.93592 0.84792 0.96840 1.22068 0.96868 0.92310 0.99693 0.89917 1.22333 0.99602 0.97545 0.95441 1.22484 0.96862 0.93328 1.01978 1.22681 0.98345 0.99251 0.95935 1.21402 0.98568 0.89936 0.85067 0.91426 1.45848 1.19320 1.40583 1.29803 1.17872 0.84341 0.79448 0.82914 1.90824 1.21672 1.66283 1.65280 1.19856 0.95928 1.03453 1.00613 1.26078 0.99939 1.05687 1.02401 1.82975 1.08652 1.29026 1.21137 1.25845 1.01114 1.08143 1.02234 1.20827 0.89410 0.99627 0.97740 1.98386 1.20642 1.91559 1.90989 0.94381 0.80294 0.97649 0.96668 0.92879 0.91610 0.89883 0.90225 0.90980 0.91066 0.75276 0.78097 0.78296 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -60.51 13.70 21.65 0.30 -60.21 16 2 C -0.10 -5.81 5.50 84.86 0.47 -5.34 16 3 Si 1.13 52.59 29.92 68.60 2.05 54.65 16 4 H -0.29 -13.59 7.11 99.48 0.71 -12.89 16 5 H -0.28 -12.20 7.11 99.48 0.71 -11.49 16 6 H -0.28 -12.22 7.11 99.48 0.71 -11.52 16 7 C -0.34 -19.76 9.99 84.03 0.84 -18.92 16 8 H 0.06 3.44 7.83 -2.91 -0.02 3.42 16 9 N -0.75 -38.49 5.44 -343.47 -1.87 -40.36 16 10 C 0.17 7.02 5.31 86.38 0.46 7.48 16 11 C -0.09 -2.78 2.73 -10.07 -0.03 -2.81 16 12 H 0.08 2.44 7.62 -2.39 -0.02 2.42 16 13 C -0.11 -3.17 6.05 31.69 0.19 -2.97 16 14 C -0.11 -2.31 6.91 31.91 0.22 -2.09 16 15 C -0.12 -2.96 6.54 31.67 0.21 -2.75 16 16 C 0.16 4.33 2.90 45.72 0.13 4.47 16 17 H 0.07 2.29 7.10 -2.39 -0.02 2.27 16 18 N -0.70 -16.62 5.00 -442.59 -2.21 -18.84 16 19 C 0.57 15.67 7.79 86.59 0.67 16.34 16 20 O -0.56 -19.88 14.71 -4.15 -0.06 -19.94 16 21 C -0.18 -3.87 5.98 -19.86 -0.12 -3.99 16 22 C -0.20 -2.65 10.38 67.31 0.70 -1.95 16 23 S 0.32 2.68 23.02 -56.49 -1.30 1.38 16 24 C -0.24 -3.18 11.00 66.64 0.73 -2.44 16 25 C -0.04 -0.80 6.49 22.68 0.15 -0.66 16 26 Cl -0.04 -1.13 27.24 -2.72 -0.07 -1.20 16 27 H 0.25 15.11 6.77 -92.71 -0.63 14.48 16 28 H 0.36 18.82 6.36 -92.71 -0.59 18.23 16 29 H 0.01 0.25 8.14 -2.39 -0.02 0.23 16 30 H 0.02 0.67 8.02 -2.39 -0.02 0.65 16 31 H 0.05 1.74 7.77 -2.39 -0.02 1.72 16 32 H 0.07 1.89 8.14 -2.39 -0.02 1.87 16 33 H 0.08 1.46 8.14 -2.39 -0.02 1.44 16 34 H 0.08 1.52 8.14 -2.38 -0.02 1.50 16 35 H 0.07 1.68 8.04 -2.39 -0.02 1.66 16 36 H 0.07 1.77 8.14 -2.39 -0.02 1.75 16 37 H 0.41 7.12 6.82 -92.71 -0.63 6.49 16 38 H 0.20 1.51 7.01 -2.91 -0.02 1.49 16 39 H 0.20 1.67 8.06 -2.91 -0.02 1.65 16 Total: -1.00 -76.25 350.03 1.47 -74.78 By element: Atomic # 1 Polarization: 25.36 SS G_CDS: 0.02 Total: 25.37 kcal Atomic # 6 Polarization: -20.25 SS G_CDS: 4.62 Total: -15.62 kcal Atomic # 7 Polarization: -115.62 SS G_CDS: -3.78 Total: -119.41 kcal Atomic # 8 Polarization: -19.88 SS G_CDS: -0.06 Total: -19.94 kcal Atomic # 14 Polarization: 52.59 SS G_CDS: 2.05 Total: 54.65 kcal Atomic # 16 Polarization: 2.68 SS G_CDS: -1.30 Total: 1.38 kcal Atomic # 17 Polarization: -1.13 SS G_CDS: -0.07 Total: -1.20 kcal Total: -76.25 1.47 -74.78 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699022755.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.639 kcal (2) G-P(sol) polarization free energy of solvation -76.250 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.611 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.473 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.777 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.138 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds