Wall clock time and date at job start Tue Mar 31 2020 15:35:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86803 * 119.99637 * 2 1 4 4 H 1.48494 * 109.47228 * 0.02562 * 3 2 1 5 5 H 1.48501 * 109.46793 * 120.00355 * 3 2 1 6 6 H 1.48500 * 109.47000 * 240.00448 * 3 2 1 7 7 C 1.38811 * 120.00134 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99665 * 179.97438 * 7 2 1 9 9 N 1.36934 * 119.99798 * 359.97438 * 7 2 1 10 10 C 1.46504 * 119.99567 * 179.97438 * 9 7 2 11 11 C 1.53004 * 109.46932 * 179.97438 * 10 9 7 12 12 H 1.08999 * 110.43609 * 305.70596 * 11 10 9 13 13 C 1.54891 * 110.48273 * 68.24397 * 11 10 9 14 14 C 1.55031 * 102.68201 * 156.51526 * 13 11 10 15 15 C 1.54269 * 104.28113 * 322.23642 * 14 13 11 16 16 C 1.53870 * 106.59902 * 23.51530 * 15 14 13 17 17 H 1.09002 * 110.03278 * 240.71899 * 16 15 14 18 18 N 1.46495 * 110.03350 * 119.28699 * 16 15 14 19 19 C 1.34780 * 120.00168 * 87.83422 * 18 16 15 20 20 O 1.21643 * 119.99974 * 359.97438 * 19 18 16 21 21 C 1.47153 * 120.00401 * 180.02562 * 19 18 16 22 22 C 1.36055 * 123.46176 * 359.70388 * 21 19 18 23 23 S 1.70444 * 110.82908 * 179.86123 * 22 21 19 24 24 C 1.75512 * 92.45684 * 0.34299 * 23 22 21 25 25 C 1.32842 * 110.57809 * 359.80612 * 24 23 22 26 26 Cl 1.73597 * 123.46581 * 180.02562 * 25 24 23 27 27 H 0.97005 * 119.99717 * 180.02562 * 1 2 3 28 28 H 0.97000 * 120.00607 * 0.02562 * 9 7 2 29 29 H 1.08998 * 109.47306 * 300.00481 * 10 9 7 30 30 H 1.08997 * 109.46860 * 60.00305 * 10 9 7 31 31 H 1.08997 * 110.75662 * 274.93332 * 13 11 10 32 32 H 1.09007 * 110.75813 * 38.30884 * 13 11 10 33 33 H 1.09003 * 110.52903 * 203.49046 * 14 13 11 34 34 H 1.08998 * 110.36713 * 80.90064 * 14 13 11 35 35 H 1.09003 * 110.03142 * 264.23206 * 15 14 13 36 36 H 1.09001 * 110.07367 * 142.82312 * 15 14 13 37 37 H 0.96999 * 119.99854 * 267.83534 * 18 16 15 38 38 H 1.07994 * 124.58686 * 359.97438 * 22 21 19 39 39 H 1.07996 * 124.70655 * 179.77861 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 1.2851 2.7465 0.0006 5 1 3.1039 1.6964 1.2125 6 1 3.1038 1.6966 -1.2126 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2020 -0.0010 9 7 1.3256 -2.3880 -0.0005 10 6 2.0582 -3.6567 -0.0017 11 6 1.0640 -4.8197 -0.0008 12 1 0.3646 -4.7218 0.8294 13 6 0.3015 -4.8819 -1.3475 14 6 -0.1480 -6.3640 -1.4160 15 6 1.0394 -7.1496 -0.8221 16 6 1.8100 -6.1677 0.0777 17 1 2.8311 -6.0511 -0.2855 18 7 1.8208 -6.6555 1.4590 19 6 2.7912 -7.4962 1.8693 20 8 3.6577 -7.8502 1.0925 21 6 2.8017 -7.9867 3.2566 22 6 1.8715 -7.6331 4.1844 23 16 2.1886 -8.3888 5.6790 24 6 3.6153 -9.1972 5.0534 25 6 3.8043 -8.8883 3.7753 26 17 5.1202 -9.5052 2.8259 27 1 -0.4850 -0.8401 0.0004 28 1 0.3556 -2.3881 -0.0005 29 1 2.6843 -3.7140 -0.8921 30 1 2.6855 -3.7148 0.8878 31 1 -0.5605 -4.2148 -1.3346 32 1 0.9648 -4.6417 -2.1785 33 1 -0.3242 -6.6627 -2.4494 34 1 -1.0448 -6.5166 -0.8157 35 1 1.6865 -7.5096 -1.6220 36 1 0.6742 -7.9896 -0.2311 37 1 1.1296 -6.3736 2.0784 38 1 1.0432 -6.9656 3.9986 39 1 4.2514 -9.8542 5.6279 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001699022756.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:35:37 Heat of formation + Delta-G solvation = -7.422416 kcal Electronic energy + Delta-G solvation = -22989.717791 eV Core-core repulsion = 19470.622565 eV Total energy + Delta-G solvation = -3519.095226 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 328.075 amu Computer time = 2.55 seconds Orbital eigenvalues (eV) -40.25085 -38.45551 -37.26518 -36.10185 -34.76232 -33.64550 -31.45309 -30.34443 -28.41264 -27.59023 -25.28112 -24.13627 -22.50111 -21.83945 -20.44559 -20.08078 -19.27496 -18.46455 -17.40550 -17.14635 -16.32656 -15.42640 -15.27583 -14.94433 -14.30681 -14.16046 -13.77500 -13.70466 -13.58937 -13.46904 -13.27865 -13.23762 -13.17978 -12.22048 -11.87679 -11.80093 -11.68608 -11.27893 -10.98902 -10.97074 -10.75272 -10.68139 -10.50113 -10.45247 -10.31160 -9.97701 -9.83800 -9.39187 -9.20728 -9.01399 -8.87158 -8.73358 -6.99480 -6.10142 -3.09241 0.29864 0.86423 1.27778 1.46871 2.31011 3.06621 3.19217 3.52573 3.56018 3.73306 4.21640 4.52761 4.67966 4.75819 4.78009 4.87676 4.96420 4.98569 5.37535 5.41183 5.47525 5.51493 5.60184 5.64103 5.70774 5.73968 5.84519 5.98553 6.02409 6.14309 6.20536 6.40815 6.47555 6.52618 6.70139 6.82458 7.44295 7.82238 8.16850 8.76524 9.23748 10.10077 10.25328 11.38597 Molecular weight = 328.08amu Principal moments of inertia in cm(-1) A = 0.013121 B = 0.002938 C = 0.002717 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2133.409766 B = 9526.766679 C =10301.685270 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.945 5.945 2 C -0.046 4.046 3 Si 1.079 2.921 4 H -0.285 1.285 5 H -0.295 1.295 6 H -0.295 1.295 7 C -0.330 4.330 8 H 0.064 0.936 9 N -0.742 5.742 10 C 0.167 3.833 11 C -0.103 4.103 12 H 0.076 0.924 13 C -0.111 4.111 14 C -0.124 4.124 15 C -0.131 4.131 16 C 0.149 3.851 17 H 0.096 0.904 18 N -0.713 5.713 19 C 0.572 3.428 20 O -0.518 6.518 21 C -0.145 4.145 22 C -0.206 4.206 23 S 0.231 5.769 24 C -0.239 4.239 25 C -0.007 4.007 26 Cl -0.017 7.017 27 H 0.254 0.746 28 H 0.366 0.634 29 H 0.022 0.978 30 H 0.018 0.982 31 H 0.072 0.928 32 H 0.072 0.928 33 H 0.064 0.936 34 H 0.062 0.938 35 H 0.070 0.930 36 H 0.065 0.935 37 H 0.397 0.603 38 H 0.179 0.821 39 H 0.179 0.821 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.720 -22.298 10.113 24.545 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.591 5.591 2 C -0.243 4.243 3 Si 0.910 3.090 4 H -0.210 1.210 5 H -0.223 1.223 6 H -0.222 1.222 7 C -0.461 4.461 8 H 0.082 0.918 9 N -0.387 5.387 10 C 0.039 3.961 11 C -0.123 4.123 12 H 0.095 0.905 13 C -0.149 4.149 14 C -0.162 4.162 15 C -0.169 4.169 16 C 0.044 3.956 17 H 0.114 0.886 18 N -0.365 5.365 19 C 0.356 3.644 20 O -0.395 6.395 21 C -0.163 4.163 22 C -0.345 4.345 23 S 0.496 5.504 24 C -0.375 4.375 25 C -0.046 4.046 26 Cl 0.012 6.988 27 H 0.065 0.935 28 H 0.200 0.800 29 H 0.040 0.960 30 H 0.036 0.964 31 H 0.090 0.910 32 H 0.091 0.909 33 H 0.083 0.917 34 H 0.081 0.919 35 H 0.088 0.912 36 H 0.083 0.917 37 H 0.231 0.769 38 H 0.196 0.804 39 H 0.196 0.804 Dipole moment (debyes) X Y Z Total from point charges 1.863 -20.922 10.856 23.644 hybrid contribution 0.385 -1.566 -1.089 1.946 sum 2.248 -22.488 9.766 24.620 Atomic orbital electron populations 1.70896 1.06003 1.28279 1.53920 1.25760 0.97056 1.00943 1.00531 0.83249 0.74219 0.75608 0.75904 1.21028 1.22297 1.22249 1.20044 0.92054 0.85865 1.48129 0.91843 1.42325 1.04791 1.00856 1.90759 1.20616 0.92797 0.84643 0.98046 1.22449 0.97753 0.93415 0.98636 0.90520 1.22477 1.00158 0.95363 0.96858 1.22407 0.97499 0.95736 1.00578 1.22541 0.97322 0.97935 0.99147 1.21706 1.01232 0.92546 0.80080 0.88623 1.46013 1.29088 1.47860 1.13491 1.17428 0.81886 0.79147 0.85901 1.90849 1.36755 1.57101 1.54764 1.20044 0.97165 1.03042 0.96055 1.25695 1.04128 1.05747 0.98918 1.83162 1.19579 1.38420 1.09257 1.25442 1.04787 1.09451 0.97853 1.20659 0.93144 0.98906 0.91865 1.98405 1.43743 1.85101 1.71586 0.93511 0.80039 0.95986 0.96381 0.90975 0.90939 0.91700 0.91898 0.91173 0.91667 0.76864 0.80372 0.80371 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -29.18 13.70 55.49 0.76 -28.42 16 2 C -0.05 -1.34 5.50 -17.43 -0.10 -1.43 16 3 Si 1.08 26.16 29.92 -169.99 -5.09 21.07 16 4 H -0.28 -6.97 7.11 56.52 0.40 -6.57 16 5 H -0.30 -6.86 7.11 56.52 0.40 -6.46 16 6 H -0.30 -6.86 7.11 56.52 0.40 -6.46 16 7 C -0.33 -9.45 9.99 -15.06 -0.15 -9.60 16 8 H 0.06 1.81 7.83 -52.49 -0.41 1.40 16 9 N -0.74 -18.64 5.46 -59.91 -0.33 -18.97 16 10 C 0.17 3.40 5.54 -4.04 -0.02 3.38 16 11 C -0.10 -1.59 2.60 -88.96 -0.23 -1.83 16 12 H 0.08 1.15 7.74 -51.93 -0.40 0.75 16 13 C -0.11 -1.62 6.11 -24.66 -0.15 -1.77 16 14 C -0.12 -1.47 6.83 -24.99 -0.17 -1.64 16 15 C -0.13 -1.60 6.59 -25.61 -0.17 -1.77 16 16 C 0.15 2.07 2.82 -66.82 -0.19 1.88 16 17 H 0.10 1.54 7.26 -51.93 -0.38 1.16 16 18 N -0.71 -8.89 4.95 -53.88 -0.27 -9.15 16 19 C 0.57 8.01 7.79 -12.64 -0.10 7.91 16 20 O -0.52 -8.88 14.71 5.24 0.08 -8.81 16 21 C -0.14 -1.67 5.98 -104.61 -0.63 -2.30 16 22 C -0.21 -1.73 10.38 29.95 0.31 -1.42 16 23 S 0.23 1.50 23.02 -107.50 -2.47 -0.98 16 24 C -0.24 -1.94 11.00 28.88 0.32 -1.62 16 25 C -0.01 -0.08 6.49 -38.99 -0.25 -0.33 16 26 Cl -0.02 -0.21 27.24 -51.86 -1.41 -1.63 16 27 H 0.25 7.66 6.77 -40.82 -0.28 7.39 16 28 H 0.37 9.27 6.41 -40.82 -0.26 9.01 16 29 H 0.02 0.47 8.06 -51.93 -0.42 0.05 16 30 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 31 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 32 H 0.07 1.13 8.00 -51.92 -0.42 0.72 16 33 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 34 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 35 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 36 H 0.06 0.77 7.92 -51.93 -0.41 0.36 16 37 H 0.40 4.00 6.85 -40.82 -0.28 3.72 16 38 H 0.18 1.10 7.01 -52.49 -0.37 0.73 16 39 H 0.18 1.03 8.06 -52.49 -0.42 0.60 16 LS Contribution 350.57 15.07 5.28 5.28 Total: -1.00 -34.14 350.57 -9.93 -44.07 By element: Atomic # 1 Polarization: 13.02 SS G_CDS: -4.95 Total: 8.07 kcal Atomic # 6 Polarization: -9.01 SS G_CDS: -1.53 Total: -10.54 kcal Atomic # 7 Polarization: -56.71 SS G_CDS: 0.17 Total: -56.54 kcal Atomic # 8 Polarization: -8.88 SS G_CDS: 0.08 Total: -8.81 kcal Atomic # 14 Polarization: 26.16 SS G_CDS: -5.09 Total: 21.07 kcal Atomic # 16 Polarization: 1.50 SS G_CDS: -2.47 Total: -0.98 kcal Atomic # 17 Polarization: -0.21 SS G_CDS: -1.41 Total: -1.63 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -34.14 -9.93 -44.07 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699022756.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.647 kcal (2) G-P(sol) polarization free energy of solvation -34.142 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.505 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.927 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.070 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.422 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.55 seconds