Wall clock time and date at job start Tue Mar 31 2020 15:35:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86803 * 119.99637 * 2 1 4 4 H 1.48494 * 109.47228 * 0.02562 * 3 2 1 5 5 H 1.48501 * 109.46793 * 120.00355 * 3 2 1 6 6 H 1.48500 * 109.47000 * 240.00448 * 3 2 1 7 7 C 1.38811 * 120.00134 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99665 * 179.97438 * 7 2 1 9 9 N 1.36934 * 119.99798 * 359.97438 * 7 2 1 10 10 C 1.46504 * 119.99567 * 179.97438 * 9 7 2 11 11 C 1.53004 * 109.46932 * 179.97438 * 10 9 7 12 12 H 1.08999 * 110.43609 * 305.70596 * 11 10 9 13 13 C 1.54891 * 110.48273 * 68.24397 * 11 10 9 14 14 C 1.55031 * 102.68201 * 156.51526 * 13 11 10 15 15 C 1.54269 * 104.28113 * 322.23642 * 14 13 11 16 16 C 1.53870 * 106.59902 * 23.51530 * 15 14 13 17 17 H 1.09002 * 110.03278 * 240.71899 * 16 15 14 18 18 N 1.46495 * 110.03350 * 119.28699 * 16 15 14 19 19 C 1.34780 * 120.00168 * 87.83422 * 18 16 15 20 20 O 1.21643 * 119.99974 * 359.97438 * 19 18 16 21 21 C 1.47153 * 120.00401 * 180.02562 * 19 18 16 22 22 C 1.36055 * 123.46176 * 359.70388 * 21 19 18 23 23 S 1.70444 * 110.82908 * 179.86123 * 22 21 19 24 24 C 1.75512 * 92.45684 * 0.34299 * 23 22 21 25 25 C 1.32842 * 110.57809 * 359.80612 * 24 23 22 26 26 Cl 1.73597 * 123.46581 * 180.02562 * 25 24 23 27 27 H 0.97005 * 119.99717 * 180.02562 * 1 2 3 28 28 H 0.97000 * 120.00607 * 0.02562 * 9 7 2 29 29 H 1.08998 * 109.47306 * 300.00481 * 10 9 7 30 30 H 1.08997 * 109.46860 * 60.00305 * 10 9 7 31 31 H 1.08997 * 110.75662 * 274.93332 * 13 11 10 32 32 H 1.09007 * 110.75813 * 38.30884 * 13 11 10 33 33 H 1.09003 * 110.52903 * 203.49046 * 14 13 11 34 34 H 1.08998 * 110.36713 * 80.90064 * 14 13 11 35 35 H 1.09003 * 110.03142 * 264.23206 * 15 14 13 36 36 H 1.09001 * 110.07367 * 142.82312 * 15 14 13 37 37 H 0.96999 * 119.99854 * 267.83534 * 18 16 15 38 38 H 1.07994 * 124.58686 * 359.97438 * 22 21 19 39 39 H 1.07996 * 124.70655 * 179.77861 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 1.2851 2.7465 0.0006 5 1 3.1039 1.6964 1.2125 6 1 3.1038 1.6966 -1.2126 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2020 -0.0010 9 7 1.3256 -2.3880 -0.0005 10 6 2.0582 -3.6567 -0.0017 11 6 1.0640 -4.8197 -0.0008 12 1 0.3646 -4.7218 0.8294 13 6 0.3015 -4.8819 -1.3475 14 6 -0.1480 -6.3640 -1.4160 15 6 1.0394 -7.1496 -0.8221 16 6 1.8100 -6.1677 0.0777 17 1 2.8311 -6.0511 -0.2855 18 7 1.8208 -6.6555 1.4590 19 6 2.7912 -7.4962 1.8693 20 8 3.6577 -7.8502 1.0925 21 6 2.8017 -7.9867 3.2566 22 6 1.8715 -7.6331 4.1844 23 16 2.1886 -8.3888 5.6790 24 6 3.6153 -9.1972 5.0534 25 6 3.8043 -8.8883 3.7753 26 17 5.1202 -9.5052 2.8259 27 1 -0.4850 -0.8401 0.0004 28 1 0.3556 -2.3881 -0.0005 29 1 2.6843 -3.7140 -0.8921 30 1 2.6855 -3.7148 0.8878 31 1 -0.5605 -4.2148 -1.3346 32 1 0.9648 -4.6417 -2.1785 33 1 -0.3242 -6.6627 -2.4494 34 1 -1.0448 -6.5166 -0.8157 35 1 1.6865 -7.5096 -1.6220 36 1 0.6742 -7.9896 -0.2311 37 1 1.1296 -6.3736 2.0784 38 1 1.0432 -6.9656 3.9986 39 1 4.2514 -9.8542 5.6279 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001699022756.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:35:36 Heat of formation + Delta-G solvation = -29.526211 kcal Electronic energy + Delta-G solvation = -22990.676283 eV Core-core repulsion = 19470.622565 eV Total energy + Delta-G solvation = -3520.053719 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 328.075 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.29589 -39.53431 -38.20776 -36.92401 -36.65732 -34.77821 -33.32379 -31.10799 -30.04317 -28.64295 -26.31495 -25.81003 -24.24262 -22.79624 -21.63028 -21.14285 -20.22821 -19.55554 -19.04025 -18.17473 -17.47263 -16.93610 -16.18595 -16.12518 -15.73712 -15.48629 -15.32882 -15.06958 -14.88786 -14.51170 -14.42093 -14.33059 -13.88467 -13.60699 -12.91550 -12.85427 -12.66656 -12.60730 -12.51005 -12.49840 -12.06738 -11.89950 -11.81967 -11.78213 -11.74187 -11.50756 -11.26222 -10.95923 -10.88330 -10.19384 -10.01643 -9.38531 -9.13396 -8.42150 -5.35722 -0.38739 0.23693 0.62204 0.66034 1.57573 1.58061 1.66935 1.83981 2.08180 2.21899 2.68920 3.33092 3.37645 3.56736 3.59470 3.80157 3.85524 4.00553 4.23349 4.30087 4.32623 4.37923 4.45748 4.50602 4.54533 4.66164 4.71463 4.82091 4.89644 4.93371 5.02466 5.11059 5.17432 5.22802 5.40422 5.53593 5.56178 6.47257 6.49220 7.07675 7.16938 7.97652 8.09258 9.10224 Molecular weight = 328.08amu Principal moments of inertia in cm(-1) A = 0.013121 B = 0.002938 C = 0.002717 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2133.409766 B = 9526.766679 C =10301.685270 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.971 5.971 2 C -0.098 4.098 3 Si 1.126 2.874 4 H -0.289 1.289 5 H -0.279 1.279 6 H -0.280 1.280 7 C -0.340 4.340 8 H 0.059 0.941 9 N -0.749 5.749 10 C 0.168 3.832 11 C -0.090 4.090 12 H 0.087 0.913 13 C -0.111 4.111 14 C -0.110 4.110 15 C -0.123 4.123 16 C 0.156 3.844 17 H 0.069 0.931 18 N -0.706 5.706 19 C 0.568 3.432 20 O -0.561 6.561 21 C -0.180 4.180 22 C -0.203 4.203 23 S 0.316 5.684 24 C -0.237 4.237 25 C -0.038 4.038 26 Cl -0.044 7.044 27 H 0.246 0.754 28 H 0.364 0.636 29 H 0.010 0.990 30 H 0.008 0.992 31 H 0.062 0.938 32 H 0.057 0.943 33 H 0.079 0.921 34 H 0.080 0.920 35 H 0.067 0.933 36 H 0.076 0.924 37 H 0.409 0.591 38 H 0.200 0.800 39 H 0.201 0.799 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.698 -23.042 11.966 25.973 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.619 5.619 2 C -0.290 4.290 3 Si 0.951 3.049 4 H -0.215 1.215 5 H -0.205 1.205 6 H -0.206 1.206 7 C -0.472 4.472 8 H 0.077 0.923 9 N -0.394 5.394 10 C 0.041 3.959 11 C -0.109 4.109 12 H 0.105 0.895 13 C -0.150 4.150 14 C -0.148 4.148 15 C -0.161 4.161 16 C 0.051 3.949 17 H 0.087 0.913 18 N -0.358 5.358 19 C 0.355 3.645 20 O -0.440 6.440 21 C -0.199 4.199 22 C -0.342 4.342 23 S 0.581 5.419 24 C -0.373 4.373 25 C -0.076 4.076 26 Cl -0.015 7.015 27 H 0.056 0.944 28 H 0.197 0.803 29 H 0.028 0.972 30 H 0.026 0.974 31 H 0.081 0.919 32 H 0.075 0.925 33 H 0.098 0.902 34 H 0.099 0.901 35 H 0.085 0.915 36 H 0.094 0.906 37 H 0.247 0.753 38 H 0.217 0.783 39 H 0.218 0.782 Dipole moment (debyes) X Y Z Total from point charges 0.834 -21.703 12.732 25.176 hybrid contribution 0.681 -1.366 -1.526 2.158 sum 1.515 -23.069 11.206 25.692 Atomic orbital electron populations 1.70996 1.06946 1.27979 1.55936 1.27161 0.97159 1.04395 1.00274 0.82651 0.73452 0.71767 0.77074 1.21458 1.20484 1.20627 1.20362 0.92188 0.87369 1.47236 0.92305 1.42449 1.04831 1.01540 1.90614 1.20685 0.93595 0.84832 0.96739 1.22281 0.96799 0.92114 0.99744 0.89462 1.22436 0.99341 0.97561 0.95613 1.22337 0.97648 0.92885 1.01883 1.22467 0.97208 0.97705 0.98760 1.21468 0.99775 0.92250 0.81425 0.91313 1.45887 1.29298 1.47481 1.13094 1.17860 0.81198 0.78649 0.86838 1.90818 1.38304 1.58716 1.56174 1.19869 0.99273 1.05372 0.95336 1.26074 1.03508 1.05078 0.99558 1.82974 1.16886 1.35579 1.06432 1.25846 1.05612 1.08835 0.96974 1.20817 0.93329 1.00588 0.92839 1.98384 1.45055 1.85507 1.72549 0.94368 0.80285 0.97158 0.97447 0.91880 0.92462 0.90231 0.90127 0.91463 0.90569 0.75342 0.78260 0.78233 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -60.31 13.70 21.65 0.30 -60.02 16 2 C -0.10 -5.75 5.50 84.86 0.47 -5.28 16 3 Si 1.13 52.41 29.92 68.60 2.05 54.46 16 4 H -0.29 -13.55 7.11 99.48 0.71 -12.85 16 5 H -0.28 -12.11 7.11 99.48 0.71 -11.41 16 6 H -0.28 -12.25 7.11 99.48 0.71 -11.54 16 7 C -0.34 -19.66 9.99 84.03 0.84 -18.82 16 8 H 0.06 3.39 7.83 -2.91 -0.02 3.37 16 9 N -0.75 -38.27 5.46 -343.44 -1.88 -40.14 16 10 C 0.17 7.03 5.54 86.38 0.48 7.51 16 11 C -0.09 -2.77 2.60 -9.72 -0.03 -2.80 16 12 H 0.09 2.52 7.74 -2.39 -0.02 2.50 16 13 C -0.11 -3.22 6.11 31.94 0.20 -3.03 16 14 C -0.11 -2.37 6.83 31.72 0.22 -2.15 16 15 C -0.12 -2.87 6.59 31.32 0.21 -2.66 16 16 C 0.16 4.34 2.82 45.72 0.13 4.47 16 17 H 0.07 2.31 7.26 -2.39 -0.02 2.29 16 18 N -0.71 -17.18 4.95 -442.62 -2.19 -19.38 16 19 C 0.57 16.01 7.79 86.58 0.67 16.68 16 20 O -0.56 -19.99 14.71 -4.17 -0.06 -20.05 16 21 C -0.18 -4.01 5.98 -19.86 -0.12 -4.12 16 22 C -0.20 -2.88 10.38 67.31 0.70 -2.18 16 23 S 0.32 2.94 23.02 -56.49 -1.30 1.64 16 24 C -0.24 -3.30 11.00 66.64 0.73 -2.57 16 25 C -0.04 -0.82 6.49 22.68 0.15 -0.67 16 26 Cl -0.04 -1.12 27.24 -2.72 -0.07 -1.19 16 27 H 0.25 15.07 6.77 -92.70 -0.63 14.44 16 28 H 0.36 18.73 6.41 -92.71 -0.59 18.14 16 29 H 0.01 0.46 8.06 -2.39 -0.02 0.44 16 30 H 0.01 0.33 8.14 -2.39 -0.02 0.31 16 31 H 0.06 1.94 8.14 -2.39 -0.02 1.92 16 32 H 0.06 1.82 8.00 -2.38 -0.02 1.80 16 33 H 0.08 1.53 8.14 -2.39 -0.02 1.51 16 34 H 0.08 1.50 8.14 -2.39 -0.02 1.48 16 35 H 0.07 1.63 8.14 -2.39 -0.02 1.61 16 36 H 0.08 1.65 7.92 -2.39 -0.02 1.63 16 37 H 0.41 7.61 6.85 -92.71 -0.64 6.97 16 38 H 0.20 1.79 7.01 -2.91 -0.02 1.77 16 39 H 0.20 1.76 8.06 -2.91 -0.02 1.74 16 Total: -1.00 -75.66 350.57 1.49 -74.16 By element: Atomic # 1 Polarization: 26.14 SS G_CDS: 0.01 Total: 26.15 kcal Atomic # 6 Polarization: -20.27 SS G_CDS: 4.64 Total: -15.63 kcal Atomic # 7 Polarization: -115.77 SS G_CDS: -3.77 Total: -119.54 kcal Atomic # 8 Polarization: -19.99 SS G_CDS: -0.06 Total: -20.05 kcal Atomic # 14 Polarization: 52.41 SS G_CDS: 2.05 Total: 54.46 kcal Atomic # 16 Polarization: 2.94 SS G_CDS: -1.30 Total: 1.64 kcal Atomic # 17 Polarization: -1.12 SS G_CDS: -0.07 Total: -1.19 kcal Total: -75.66 1.49 -74.16 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699022756.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.636 kcal (2) G-P(sol) polarization free energy of solvation -75.656 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.019 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.493 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.163 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.526 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds