Wall clock time and date at job start Tue Mar 31 2020 15:42:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86798 * 120.00228 * 2 1 4 4 H 1.48497 * 109.47530 * 270.00417 * 3 2 1 5 5 H 1.48502 * 109.46913 * 30.00468 * 3 2 1 6 6 H 1.48501 * 109.47174 * 149.99992 * 3 2 1 7 7 C 1.38813 * 119.99621 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00357 * 359.97438 * 7 2 1 9 9 N 1.36933 * 119.99785 * 179.97438 * 7 2 1 10 10 C 1.46506 * 120.00280 * 179.97438 * 9 7 2 11 11 C 1.52994 * 109.47382 * 180.02562 * 10 9 7 12 12 H 1.09001 * 110.43334 * 52.45906 * 11 10 9 13 13 C 1.54888 * 110.48770 * 289.77723 * 11 10 9 14 14 C 1.54891 * 102.75120 * 203.38058 * 13 11 10 15 15 C 1.54267 * 104.19324 * 37.94011 * 14 13 11 16 16 C 1.53876 * 106.59870 * 336.39035 * 15 14 13 17 17 H 1.08998 * 110.02768 * 119.28860 * 16 15 14 18 18 N 1.46501 * 110.03274 * 240.71671 * 16 15 14 19 19 C 1.34776 * 119.99731 * 273.54605 * 18 16 15 20 20 O 1.21646 * 120.00303 * 0.02562 * 19 18 16 21 21 C 1.47186 * 119.99839 * 179.97438 * 19 18 16 22 22 C 1.35965 * 123.45561 * 0.03299 * 21 19 18 23 23 S 1.70450 * 110.84584 * 179.97438 * 22 21 19 24 24 C 1.75506 * 92.45292 * 359.97438 * 23 22 21 25 25 Cl 1.73597 * 124.71540 * 179.97438 * 24 23 22 26 26 C 1.32891 * 110.56206 * 359.71848 * 24 23 22 27 27 H 0.97000 * 119.99607 * 359.97438 * 1 2 3 28 28 H 0.96999 * 120.00152 * 0.02562 * 9 7 2 29 29 H 1.09002 * 109.46611 * 60.00022 * 10 9 7 30 30 H 1.08999 * 109.46854 * 300.00832 * 10 9 7 31 31 H 1.09005 * 110.75648 * 321.69288 * 13 11 10 32 32 H 1.08999 * 110.75852 * 85.06219 * 13 11 10 33 33 H 1.09004 * 110.48613 * 279.26383 * 14 13 11 34 34 H 1.08994 * 110.48745 * 156.61801 * 14 13 11 35 35 H 1.08995 * 110.03032 * 217.10762 * 15 14 13 36 36 H 1.08998 * 110.03405 * 95.67701 * 15 14 13 37 37 H 0.96995 * 119.99815 * 93.54680 * 18 16 15 38 38 H 1.08004 * 124.57969 * 359.95488 * 22 21 19 39 39 H 1.07997 * 123.47264 * 180.25213 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4978 2.0465 -1.4000 5 1 1.4478 2.6526 0.7002 6 1 3.5478 1.4401 0.7000 7 6 2.0102 -1.2022 -0.0005 8 1 1.4702 -2.1375 -0.0005 9 7 3.3795 -1.2022 -0.0011 10 6 4.1121 -2.4710 -0.0011 11 6 5.6163 -2.1915 -0.0011 12 1 5.8767 -1.5100 0.8088 13 6 6.0596 -1.6098 -1.3664 14 6 7.5676 -1.9601 -1.4139 15 6 7.6508 -3.3611 -0.7734 16 6 6.4101 -3.5081 0.1249 17 1 5.8006 -4.3456 -0.2146 18 7 6.8196 -3.7162 1.5160 19 6 7.0870 -4.9600 1.9609 20 8 6.9887 -5.9098 1.2073 21 6 7.4989 -5.1689 3.3584 22 6 7.6315 -4.1596 4.2597 23 16 8.1217 -4.7618 5.7771 24 6 8.1516 -6.4172 5.1948 25 17 8.5788 -7.7966 6.1583 26 6 7.7964 -6.4684 3.9152 27 1 -0.4849 0.8401 0.0004 28 1 3.8646 -0.3622 -0.0007 29 1 3.8484 -3.0427 -0.8909 30 1 3.8490 -3.0424 0.8891 31 1 5.5248 -2.0930 -2.1842 32 1 5.9129 -0.5300 -1.3922 33 1 8.1449 -1.2404 -0.8334 34 1 7.9199 -1.9905 -2.4449 35 1 8.5575 -3.4445 -0.1744 36 1 7.6432 -4.1272 -1.5488 37 1 6.8983 -2.9588 2.1168 38 1 7.4510 -3.1169 4.0434 39 1 7.7402 -7.3862 3.3489 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001699031925.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:42:55 Heat of formation + Delta-G solvation = -6.973577 kcal Electronic energy + Delta-G solvation = -22732.086766 eV Core-core repulsion = 19213.011003 eV Total energy + Delta-G solvation = -3519.075763 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 328.075 amu Computer time = 1.88 seconds Orbital eigenvalues (eV) -40.32632 -38.48640 -37.49391 -36.56642 -34.70344 -33.72096 -31.57651 -30.18415 -29.08430 -27.64935 -25.37090 -24.47298 -22.14431 -21.76868 -20.54568 -20.15693 -19.34955 -18.63176 -17.65646 -17.18162 -16.48738 -15.32690 -15.23657 -14.78217 -14.53091 -14.42229 -14.00583 -13.97382 -13.82996 -13.52267 -13.30700 -13.04256 -12.68417 -12.36557 -12.07289 -11.99941 -11.82640 -11.71302 -11.19229 -11.11449 -10.99321 -10.85030 -10.59953 -10.52709 -10.46120 -10.11202 -10.02820 -9.60993 -9.31454 -9.16000 -8.91491 -8.85595 -7.24912 -5.78141 -3.13767 0.23245 0.60731 1.31013 1.50287 1.74630 3.05992 3.15212 3.33370 3.36221 3.42389 4.37358 4.47213 4.56715 4.67912 4.72718 4.84068 4.90957 5.21013 5.27199 5.36981 5.43497 5.51136 5.54582 5.63443 5.65164 5.70196 5.76866 5.81895 5.93883 6.07994 6.12384 6.30180 6.40503 6.45730 6.64924 6.75969 7.37321 7.98418 8.08450 8.40828 9.19811 9.91808 10.11783 11.40441 Molecular weight = 328.08amu Principal moments of inertia in cm(-1) A = 0.014731 B = 0.002728 C = 0.002493 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1900.309900 B =10262.363770 C =11228.025731 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C 0.003 3.997 3 Si 0.885 3.115 4 H -0.284 1.284 5 H -0.291 1.291 6 H -0.278 1.278 7 C -0.243 4.243 8 H 0.090 0.910 9 N -0.754 5.754 10 C 0.165 3.835 11 C -0.107 4.107 12 H 0.078 0.922 13 C -0.114 4.114 14 C -0.125 4.125 15 C -0.131 4.131 16 C 0.148 3.852 17 H 0.097 0.903 18 N -0.713 5.713 19 C 0.578 3.422 20 O -0.532 6.532 21 C -0.142 4.142 22 C -0.207 4.207 23 S 0.239 5.761 24 C -0.175 4.175 25 Cl -0.011 7.011 26 C -0.067 4.067 27 H 0.259 0.741 28 H 0.360 0.640 29 H 0.031 0.969 30 H 0.026 0.974 31 H 0.076 0.924 32 H 0.070 0.930 33 H 0.062 0.938 34 H 0.065 0.935 35 H 0.065 0.935 36 H 0.071 0.929 37 H 0.398 0.602 38 H 0.179 0.821 39 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.025 -9.371 10.138 26.847 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.192 4.192 3 Si 0.716 3.284 4 H -0.211 1.211 5 H -0.218 1.218 6 H -0.205 1.205 7 C -0.373 4.373 8 H 0.107 0.893 9 N -0.400 5.400 10 C 0.038 3.962 11 C -0.126 4.126 12 H 0.096 0.904 13 C -0.152 4.152 14 C -0.162 4.162 15 C -0.170 4.170 16 C 0.043 3.957 17 H 0.115 0.885 18 N -0.363 5.363 19 C 0.362 3.638 20 O -0.410 6.410 21 C -0.160 4.160 22 C -0.346 4.346 23 S 0.504 5.496 24 C -0.318 4.318 25 Cl 0.018 6.982 26 C -0.098 4.098 27 H 0.069 0.931 28 H 0.193 0.807 29 H 0.049 0.951 30 H 0.044 0.956 31 H 0.094 0.906 32 H 0.088 0.912 33 H 0.081 0.919 34 H 0.084 0.916 35 H 0.084 0.916 36 H 0.089 0.911 37 H 0.233 0.767 38 H 0.197 0.803 39 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges 23.051 -9.610 11.073 27.319 hybrid contribution 0.206 0.905 -0.948 1.327 sum 23.257 -8.705 10.125 26.818 Atomic orbital electron populations 1.69707 1.05108 1.25791 1.57641 1.24680 0.95235 0.97179 1.02138 0.86537 0.79099 0.85022 0.77768 1.21056 1.21768 1.20453 1.19066 0.80647 0.94743 1.42852 0.89257 1.42670 1.03994 1.02097 1.91203 1.20668 0.87397 0.89348 0.98821 1.22490 0.96546 0.95042 0.98520 0.90372 1.22496 0.94587 1.01221 0.96853 1.22384 0.97151 0.96190 1.00514 1.22547 0.97679 0.97715 0.99046 1.21724 0.95144 0.99046 0.79737 0.88472 1.46015 1.69063 1.08077 1.13182 1.17457 0.77182 0.83297 0.85818 1.90811 1.52257 1.40911 1.57033 1.20082 1.08299 0.92247 0.95403 1.25838 1.05591 1.04430 0.98740 1.83218 1.63215 0.94420 1.08776 1.25102 1.15018 0.94735 0.96926 1.98381 1.91654 1.38633 1.69552 1.21161 0.97577 0.98578 0.92452 0.93059 0.80718 0.95138 0.95615 0.90575 0.91155 0.91897 0.91625 0.91641 0.91054 0.76718 0.80350 0.81900 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 38. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -29.36 13.97 55.49 0.78 -28.58 16 2 C 0.00 0.10 5.50 -17.43 -0.10 0.00 16 3 Si 0.89 21.75 27.73 -169.99 -4.71 17.04 16 4 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 5 H -0.29 -7.28 7.11 56.52 0.40 -6.87 16 6 H -0.28 -6.33 6.52 56.52 0.37 -5.96 16 7 C -0.24 -6.86 10.47 -15.06 -0.16 -7.02 16 8 H 0.09 2.72 8.06 -52.49 -0.42 2.30 16 9 N -0.75 -17.45 5.30 -59.91 -0.32 -17.77 16 10 C 0.16 3.10 5.54 -4.04 -0.02 3.07 16 11 C -0.11 -1.49 2.58 -88.97 -0.23 -1.72 16 12 H 0.08 1.04 7.73 -51.93 -0.40 0.64 16 13 C -0.11 -1.49 6.19 -24.74 -0.15 -1.64 16 14 C -0.12 -1.31 6.83 -25.07 -0.17 -1.48 16 15 C -0.13 -1.46 6.59 -25.61 -0.17 -1.63 16 16 C 0.15 1.88 2.79 -66.81 -0.19 1.69 16 17 H 0.10 1.43 7.30 -51.93 -0.38 1.05 16 18 N -0.71 -8.06 4.96 -53.87 -0.27 -8.33 16 19 C 0.58 7.44 7.78 -12.63 -0.10 7.34 16 20 O -0.53 -8.71 16.47 5.24 0.09 -8.62 16 21 C -0.14 -1.49 5.98 -104.63 -0.63 -2.12 16 22 C -0.21 -1.63 10.38 29.92 0.31 -1.32 16 23 S 0.24 1.68 23.02 -107.50 -2.47 -0.79 16 24 C -0.17 -1.55 7.01 28.89 0.20 -1.35 16 25 Cl -0.01 -0.09 29.27 -51.86 -1.52 -1.61 16 26 C -0.07 -0.68 10.04 -38.98 -0.39 -1.07 16 27 H 0.26 7.74 8.31 -40.82 -0.34 7.40 16 28 H 0.36 8.03 5.50 -40.82 -0.22 7.81 16 29 H 0.03 0.60 8.02 -51.93 -0.42 0.18 16 30 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 31 H 0.08 1.05 7.97 -51.93 -0.41 0.64 16 32 H 0.07 0.96 8.14 -51.93 -0.42 0.53 16 33 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 34 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 35 H 0.06 0.70 7.92 -51.93 -0.41 0.29 16 36 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 37 H 0.40 3.54 6.84 -40.82 -0.28 3.26 16 38 H 0.18 0.97 7.01 -52.48 -0.37 0.60 16 39 H 0.16 1.68 8.06 -52.49 -0.42 1.25 16 LS Contribution 352.56 15.07 5.31 5.31 Total: -1.00 -33.19 352.56 -9.93 -43.12 By element: Atomic # 1 Polarization: 12.50 SS G_CDS: -5.02 Total: 7.48 kcal Atomic # 6 Polarization: -5.46 SS G_CDS: -1.79 Total: -7.24 kcal Atomic # 7 Polarization: -54.87 SS G_CDS: 0.19 Total: -54.68 kcal Atomic # 8 Polarization: -8.71 SS G_CDS: 0.09 Total: -8.62 kcal Atomic # 14 Polarization: 21.75 SS G_CDS: -4.71 Total: 17.04 kcal Atomic # 16 Polarization: 1.68 SS G_CDS: -2.47 Total: -0.79 kcal Atomic # 17 Polarization: -0.09 SS G_CDS: -1.52 Total: -1.61 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -33.19 -9.93 -43.12 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699031925.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.145 kcal (2) G-P(sol) polarization free energy of solvation -33.193 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.952 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.926 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.119 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.974 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.88 seconds