Wall clock time and date at job start Tue Mar 31 2020 15:42:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86798 * 120.00228 * 2 1 4 4 H 1.48497 * 109.47530 * 270.00417 * 3 2 1 5 5 H 1.48502 * 109.46913 * 30.00468 * 3 2 1 6 6 H 1.48501 * 109.47174 * 149.99992 * 3 2 1 7 7 C 1.38813 * 119.99621 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00357 * 359.97438 * 7 2 1 9 9 N 1.36933 * 119.99785 * 179.97438 * 7 2 1 10 10 C 1.46506 * 120.00280 * 179.97438 * 9 7 2 11 11 C 1.52994 * 109.47382 * 180.02562 * 10 9 7 12 12 H 1.09001 * 110.43334 * 52.45906 * 11 10 9 13 13 C 1.54888 * 110.48770 * 289.77723 * 11 10 9 14 14 C 1.54891 * 102.75120 * 203.38058 * 13 11 10 15 15 C 1.54267 * 104.19324 * 37.94011 * 14 13 11 16 16 C 1.53876 * 106.59870 * 336.39035 * 15 14 13 17 17 H 1.08998 * 110.02768 * 119.28860 * 16 15 14 18 18 N 1.46501 * 110.03274 * 240.71671 * 16 15 14 19 19 C 1.34776 * 119.99731 * 273.54605 * 18 16 15 20 20 O 1.21646 * 120.00303 * 0.02562 * 19 18 16 21 21 C 1.47186 * 119.99839 * 179.97438 * 19 18 16 22 22 C 1.35965 * 123.45561 * 0.03299 * 21 19 18 23 23 S 1.70450 * 110.84584 * 179.97438 * 22 21 19 24 24 C 1.75506 * 92.45292 * 359.97438 * 23 22 21 25 25 Cl 1.73597 * 124.71540 * 179.97438 * 24 23 22 26 26 C 1.32891 * 110.56206 * 359.71848 * 24 23 22 27 27 H 0.97000 * 119.99607 * 359.97438 * 1 2 3 28 28 H 0.96999 * 120.00152 * 0.02562 * 9 7 2 29 29 H 1.09002 * 109.46611 * 60.00022 * 10 9 7 30 30 H 1.08999 * 109.46854 * 300.00832 * 10 9 7 31 31 H 1.09005 * 110.75648 * 321.69288 * 13 11 10 32 32 H 1.08999 * 110.75852 * 85.06219 * 13 11 10 33 33 H 1.09004 * 110.48613 * 279.26383 * 14 13 11 34 34 H 1.08994 * 110.48745 * 156.61801 * 14 13 11 35 35 H 1.08995 * 110.03032 * 217.10762 * 15 14 13 36 36 H 1.08998 * 110.03405 * 95.67701 * 15 14 13 37 37 H 0.96995 * 119.99815 * 93.54680 * 18 16 15 38 38 H 1.08004 * 124.57969 * 359.95488 * 22 21 19 39 39 H 1.07997 * 123.47264 * 180.25213 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4978 2.0465 -1.4000 5 1 1.4478 2.6526 0.7002 6 1 3.5478 1.4401 0.7000 7 6 2.0102 -1.2022 -0.0005 8 1 1.4702 -2.1375 -0.0005 9 7 3.3795 -1.2022 -0.0011 10 6 4.1121 -2.4710 -0.0011 11 6 5.6163 -2.1915 -0.0011 12 1 5.8767 -1.5100 0.8088 13 6 6.0596 -1.6098 -1.3664 14 6 7.5676 -1.9601 -1.4139 15 6 7.6508 -3.3611 -0.7734 16 6 6.4101 -3.5081 0.1249 17 1 5.8006 -4.3456 -0.2146 18 7 6.8196 -3.7162 1.5160 19 6 7.0870 -4.9600 1.9609 20 8 6.9887 -5.9098 1.2073 21 6 7.4989 -5.1689 3.3584 22 6 7.6315 -4.1596 4.2597 23 16 8.1217 -4.7618 5.7771 24 6 8.1516 -6.4172 5.1948 25 17 8.5788 -7.7966 6.1583 26 6 7.7964 -6.4684 3.9152 27 1 -0.4849 0.8401 0.0004 28 1 3.8646 -0.3622 -0.0007 29 1 3.8484 -3.0427 -0.8909 30 1 3.8490 -3.0424 0.8891 31 1 5.5248 -2.0930 -2.1842 32 1 5.9129 -0.5300 -1.3922 33 1 8.1449 -1.2404 -0.8334 34 1 7.9199 -1.9905 -2.4449 35 1 8.5575 -3.4445 -0.1744 36 1 7.6432 -4.1272 -1.5488 37 1 6.8983 -2.9588 2.1168 38 1 7.4510 -3.1169 4.0434 39 1 7.7402 -7.3862 3.3489 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001699031925.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:42:54 Heat of formation + Delta-G solvation = -28.703456 kcal Electronic energy + Delta-G solvation = -22733.029044 eV Core-core repulsion = 19213.011003 eV Total energy + Delta-G solvation = -3520.018041 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 328.075 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.30429 -39.48741 -38.28139 -37.32833 -36.46567 -34.78727 -33.56148 -30.95594 -30.57181 -28.58706 -26.49930 -25.79787 -23.72719 -22.81870 -21.65446 -21.11285 -20.33737 -19.74008 -19.17587 -18.11212 -17.52732 -16.48797 -16.41237 -16.06858 -15.91527 -15.42308 -15.31397 -14.94944 -14.65984 -14.64113 -14.57227 -14.38111 -13.82064 -13.74716 -13.44527 -12.95953 -12.82896 -12.68096 -12.60706 -12.37990 -12.17493 -11.96779 -11.85185 -11.82875 -11.69788 -11.58829 -11.42433 -11.06553 -10.96315 -10.17107 -9.96591 -9.51037 -9.31091 -8.02738 -5.37333 -0.44816 -0.02272 0.64943 0.69972 1.08293 1.37899 1.43871 1.51057 2.14421 2.24313 2.49402 3.28314 3.33041 3.64254 3.78726 3.81531 3.89085 3.97891 4.13936 4.36028 4.45626 4.48957 4.52704 4.58535 4.61024 4.68588 4.74131 4.93819 4.98772 5.01163 5.09277 5.17335 5.24330 5.29955 5.48987 5.57814 5.74627 6.20625 6.48582 7.07761 7.15985 7.81811 8.04566 9.19148 Molecular weight = 328.08amu Principal moments of inertia in cm(-1) A = 0.014731 B = 0.002728 C = 0.002493 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1900.309900 B =10262.363770 C =11228.025731 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.987 5.987 2 C -0.067 4.067 3 Si 0.961 3.039 4 H -0.277 1.277 5 H -0.297 1.297 6 H -0.243 1.243 7 C -0.239 4.239 8 H 0.048 0.952 9 N -0.751 5.751 10 C 0.164 3.836 11 C -0.094 4.094 12 H 0.097 0.903 13 C -0.117 4.117 14 C -0.111 4.111 15 C -0.125 4.125 16 C 0.152 3.848 17 H 0.069 0.931 18 N -0.703 5.703 19 C 0.576 3.424 20 O -0.579 6.579 21 C -0.171 4.171 22 C -0.194 4.194 23 S 0.304 5.696 24 C -0.187 4.187 25 Cl -0.009 7.009 26 C -0.083 4.083 27 H 0.258 0.742 28 H 0.369 0.631 29 H 0.017 0.983 30 H 0.014 0.986 31 H 0.061 0.939 32 H 0.072 0.928 33 H 0.082 0.918 34 H 0.078 0.922 35 H 0.075 0.925 36 H 0.065 0.935 37 H 0.412 0.588 38 H 0.207 0.793 39 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 26.153 -7.050 11.434 29.401 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.637 5.637 2 C -0.258 4.258 3 Si 0.788 3.212 4 H -0.203 1.203 5 H -0.224 1.224 6 H -0.167 1.167 7 C -0.370 4.370 8 H 0.066 0.934 9 N -0.397 5.397 10 C 0.037 3.963 11 C -0.113 4.113 12 H 0.115 0.885 13 C -0.155 4.155 14 C -0.148 4.148 15 C -0.163 4.163 16 C 0.047 3.953 17 H 0.087 0.913 18 N -0.354 5.354 19 C 0.363 3.637 20 O -0.460 6.460 21 C -0.189 4.189 22 C -0.333 4.333 23 S 0.569 5.431 24 C -0.330 4.330 25 Cl 0.020 6.980 26 C -0.114 4.114 27 H 0.067 0.933 28 H 0.203 0.797 29 H 0.035 0.965 30 H 0.032 0.968 31 H 0.080 0.920 32 H 0.090 0.910 33 H 0.101 0.899 34 H 0.096 0.904 35 H 0.093 0.907 36 H 0.084 0.916 37 H 0.250 0.750 38 H 0.224 0.776 39 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges 26.235 -7.296 12.390 29.917 hybrid contribution -0.830 0.070 -1.276 1.524 sum 25.405 -7.226 11.114 28.656 Atomic orbital electron populations 1.69913 1.07426 1.26851 1.59512 1.25610 0.96186 1.01664 1.02317 0.85320 0.78838 0.78806 0.78275 1.20271 1.22351 1.16700 1.19003 0.82929 0.93297 1.41770 0.93414 1.42574 1.02217 1.03977 1.90913 1.20761 0.90589 0.87398 0.97506 1.22345 0.92728 0.96135 1.00113 0.88506 1.22505 0.96494 1.01009 0.95460 1.22321 0.95186 0.95700 1.01642 1.22479 0.96913 0.98295 0.98638 1.21535 0.95589 0.97231 0.80939 0.91292 1.45881 1.68358 1.08291 1.12877 1.17820 0.76363 0.82967 0.86562 1.90783 1.54475 1.42296 1.58450 1.19829 1.11300 0.93138 0.94643 1.26226 1.03065 1.05269 0.98723 1.83070 1.61120 0.91959 1.06985 1.25274 1.14785 0.96182 0.96801 1.98381 1.91589 1.38860 1.69217 1.21118 0.98738 0.98436 0.93135 0.93284 0.79678 0.96453 0.96828 0.91992 0.90969 0.89931 0.90354 0.90667 0.91618 0.74996 0.77581 0.83240 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.99 -63.57 13.97 21.65 0.30 -63.27 16 2 C -0.07 -3.91 5.50 84.86 0.47 -3.45 16 3 Si 0.96 44.08 27.73 68.60 1.90 45.98 16 4 H -0.28 -12.34 7.11 99.48 0.71 -11.64 16 5 H -0.30 -13.85 7.11 99.48 0.71 -13.14 16 6 H -0.24 -9.63 6.52 99.48 0.65 -8.98 16 7 C -0.24 -13.74 10.47 84.03 0.88 -12.86 16 8 H 0.05 3.07 8.06 -2.91 -0.02 3.05 16 9 N -0.75 -34.16 5.30 -343.45 -1.82 -35.98 16 10 C 0.16 6.16 5.54 86.38 0.48 6.64 16 11 C -0.09 -2.46 2.58 -9.72 -0.03 -2.48 16 12 H 0.10 2.22 7.73 -2.39 -0.02 2.20 16 13 C -0.12 -2.78 6.19 31.89 0.20 -2.58 16 14 C -0.11 -1.96 6.83 31.67 0.22 -1.74 16 15 C -0.12 -2.53 6.59 31.32 0.21 -2.32 16 16 C 0.15 3.72 2.79 45.71 0.13 3.85 16 17 H 0.07 2.10 7.30 -2.39 -0.02 2.08 16 18 N -0.70 -14.86 4.96 -442.58 -2.20 -17.06 16 19 C 0.58 14.73 7.78 86.59 0.67 15.40 16 20 O -0.58 -19.69 16.47 -4.18 -0.07 -19.76 16 21 C -0.17 -3.43 5.98 -19.87 -0.12 -3.55 16 22 C -0.19 -2.48 10.38 67.29 0.70 -1.78 16 23 S 0.30 3.37 23.02 -56.49 -1.30 2.07 16 24 C -0.19 -3.11 7.01 66.64 0.47 -2.64 16 25 Cl -0.01 -0.14 29.27 -2.72 -0.08 -0.22 16 26 C -0.08 -1.70 10.04 22.68 0.23 -1.47 16 27 H 0.26 15.77 8.31 -92.71 -0.77 15.00 16 28 H 0.37 15.44 5.50 -92.71 -0.51 14.93 16 29 H 0.02 0.70 8.02 -2.39 -0.02 0.68 16 30 H 0.01 0.55 8.14 -2.39 -0.02 0.53 16 31 H 0.06 1.65 7.97 -2.38 -0.02 1.63 16 32 H 0.07 1.72 8.14 -2.39 -0.02 1.70 16 33 H 0.08 1.20 8.14 -2.38 -0.02 1.18 16 34 H 0.08 1.24 8.14 -2.39 -0.02 1.22 16 35 H 0.07 1.41 7.92 -2.39 -0.02 1.39 16 36 H 0.07 1.42 8.14 -2.39 -0.02 1.40 16 37 H 0.41 6.10 6.84 -92.71 -0.63 5.47 16 38 H 0.21 1.34 7.01 -2.91 -0.02 1.32 16 39 H 0.15 3.32 8.06 -2.91 -0.02 3.29 16 Total: -1.00 -75.02 352.56 1.13 -73.90 By element: Atomic # 1 Polarization: 23.43 SS G_CDS: -0.11 Total: 23.32 kcal Atomic # 6 Polarization: -13.48 SS G_CDS: 4.50 Total: -8.99 kcal Atomic # 7 Polarization: -112.60 SS G_CDS: -3.71 Total: -116.31 kcal Atomic # 8 Polarization: -19.69 SS G_CDS: -0.07 Total: -19.76 kcal Atomic # 14 Polarization: 44.08 SS G_CDS: 1.90 Total: 45.98 kcal Atomic # 16 Polarization: 3.37 SS G_CDS: -1.30 Total: 2.07 kcal Atomic # 17 Polarization: -0.14 SS G_CDS: -0.08 Total: -0.22 kcal Total: -75.02 1.13 -73.90 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699031925.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.192 kcal (2) G-P(sol) polarization free energy of solvation -75.023 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.831 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.128 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.896 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.703 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds