Wall clock time and date at job start Tue Mar 31 2020 15:42:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86797 * 119.99662 * 2 1 4 4 H 1.48503 * 109.47161 * 239.99599 * 3 2 1 5 5 H 1.48505 * 109.47404 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47361 * 119.99689 * 3 2 1 7 7 C 1.38807 * 120.00272 * 179.97438 * 2 1 3 8 8 H 1.07993 * 120.00400 * 180.02562 * 7 2 1 9 9 N 1.36940 * 119.99889 * 359.97438 * 7 2 1 10 10 C 1.46500 * 120.00092 * 179.97438 * 9 7 2 11 11 C 1.53001 * 109.47035 * 180.02562 * 10 9 7 12 12 H 1.08997 * 110.01633 * 306.39196 * 11 10 9 13 13 C 1.54262 * 110.03157 * 67.83637 * 11 10 9 14 14 C 1.54898 * 104.19273 * 142.89305 * 13 11 10 15 15 C 1.54893 * 102.74705 * 322.05592 * 14 13 11 16 16 C 1.53879 * 110.02855 * 185.00490 * 11 10 9 17 17 H 1.09005 * 110.03480 * 0.04791 * 16 11 10 18 18 N 1.46498 * 110.03045 * 121.42988 * 16 11 10 19 19 C 1.34777 * 119.99828 * 204.71910 * 18 16 11 20 20 O 1.21643 * 119.99981 * 0.28057 * 19 18 16 21 21 C 1.47188 * 120.00049 * 180.27659 * 19 18 16 22 22 C 1.35963 * 123.45341 * 0.03180 * 21 19 18 23 23 S 1.70442 * 110.84358 * 179.97438 * 22 21 19 24 24 C 1.75502 * 92.45796 * 359.97438 * 23 22 21 25 25 Cl 1.73594 * 124.72167 * 180.02562 * 24 23 22 26 26 C 1.32893 * 110.55997 * 359.73996 * 24 23 22 27 27 H 0.97005 * 120.00217 * 0.02562 * 1 2 3 28 28 H 0.97003 * 119.99880 * 0.02562 * 9 7 2 29 29 H 1.09000 * 109.46670 * 60.00514 * 10 9 7 30 30 H 1.09002 * 109.47281 * 300.00964 * 10 9 7 31 31 H 1.08997 * 110.48915 * 261.56953 * 13 11 10 32 32 H 1.09004 * 110.48793 * 24.08695 * 13 11 10 33 33 H 1.08997 * 110.75448 * 80.37556 * 14 13 11 34 34 H 1.08999 * 110.75041 * 203.56218 * 14 13 11 35 35 H 1.08997 * 110.48423 * 279.26168 * 15 14 13 36 36 H 1.09000 * 110.48202 * 156.62528 * 15 14 13 37 37 H 0.97001 * 120.00384 * 25.00357 * 18 16 11 38 38 H 1.07997 * 124.57969 * 359.97438 * 22 21 19 39 39 H 1.08001 * 123.47892 * 180.22923 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.1040 1.6964 -1.2125 5 1 1.2851 2.7465 -0.0006 6 1 3.1038 1.6966 1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0010 9 7 1.3257 -2.3880 0.0016 10 6 2.0582 -3.6568 0.0016 11 6 1.0639 -4.8197 0.0022 12 1 0.3600 -4.7082 0.8269 13 6 0.3044 -4.8663 -1.3397 14 6 0.1417 -6.3788 -1.6316 15 6 1.4876 -6.9683 -1.1413 16 6 1.8162 -6.1561 0.1284 17 1 2.8895 -5.9761 0.1900 18 7 1.3597 -6.8785 1.3183 19 6 2.1674 -7.7807 1.9100 20 8 3.2773 -7.9915 1.4590 21 6 1.7066 -8.5109 3.1020 22 6 0.4816 -8.3313 3.6640 23 16 0.2854 -9.3379 5.0253 24 6 1.8899 -10.0251 4.8427 25 17 2.5732 -11.2321 5.8866 26 6 2.5067 -9.4973 3.7906 27 1 -0.4851 0.8401 -0.0004 28 1 0.3556 -2.3880 0.0016 29 1 2.6854 -3.7140 0.8912 30 1 2.6843 -3.7148 -0.8888 31 1 -0.6708 -4.3894 -1.2428 32 1 0.8873 -4.3848 -2.1249 33 1 -0.6914 -6.7941 -1.0646 34 1 0.0061 -6.5537 -2.6988 35 1 2.2624 -6.8282 -1.8950 36 1 1.3756 -8.0253 -0.8998 37 1 0.4747 -6.7105 1.6780 38 1 -0.2661 -7.6437 3.2973 39 1 3.5046 -9.7742 3.4842 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001699031926.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:42:58 Heat of formation + Delta-G solvation = -10.783933 kcal Electronic energy + Delta-G solvation = -22629.010170 eV Core-core repulsion = 19109.769177 eV Total energy + Delta-G solvation = -3519.240993 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 328.075 amu Computer time = 1.71 seconds Orbital eigenvalues (eV) -40.29689 -38.42902 -37.47077 -36.55042 -34.54334 -33.53492 -31.38696 -30.13980 -28.59056 -27.63429 -25.36305 -24.37395 -22.40704 -21.76142 -20.43673 -20.08136 -19.24248 -18.52567 -17.37911 -16.94221 -16.30086 -15.35071 -15.21148 -14.77310 -14.58656 -14.41447 -13.99809 -13.81761 -13.67183 -13.52792 -13.14338 -13.03443 -12.80417 -12.05382 -11.99634 -11.97877 -11.58039 -11.35490 -11.16945 -10.95491 -10.83883 -10.78643 -10.61739 -10.44474 -10.31651 -10.07890 -9.93102 -9.70779 -9.30763 -9.10607 -8.87161 -8.83004 -6.92444 -5.77142 -3.05435 0.24147 0.61220 1.31697 1.51482 1.75139 3.10986 3.17515 3.44407 3.48618 3.49735 4.39128 4.53926 4.64470 4.77841 4.80275 4.85360 5.05055 5.22206 5.38144 5.44332 5.54696 5.59618 5.65372 5.71007 5.79139 5.83337 5.87716 6.03633 6.13827 6.20549 6.25995 6.47156 6.55934 6.59410 6.77067 6.88832 7.42257 7.70042 8.12354 8.42056 9.53352 10.10677 10.45799 11.45753 Molecular weight = 328.08amu Principal moments of inertia in cm(-1) A = 0.016281 B = 0.002442 C = 0.002292 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1719.362972 B =11465.050350 C =12212.990316 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.014 4.014 3 Si 0.907 3.093 4 H -0.286 1.286 5 H -0.291 1.291 6 H -0.286 1.286 7 C -0.238 4.238 8 H 0.069 0.931 9 N -0.731 5.731 10 C 0.161 3.839 11 C -0.102 4.102 12 H 0.077 0.923 13 C -0.112 4.112 14 C -0.125 4.125 15 C -0.130 4.130 16 C 0.146 3.854 17 H 0.095 0.905 18 N -0.711 5.711 19 C 0.576 3.424 20 O -0.533 6.533 21 C -0.142 4.142 22 C -0.207 4.207 23 S 0.239 5.761 24 C -0.175 4.175 25 Cl -0.011 7.011 26 C -0.067 4.067 27 H 0.255 0.745 28 H 0.384 0.616 29 H 0.018 0.982 30 H 0.023 0.977 31 H 0.069 0.931 32 H 0.074 0.926 33 H 0.061 0.939 34 H 0.064 0.936 35 H 0.075 0.925 36 H 0.064 0.936 37 H 0.397 0.603 38 H 0.180 0.820 39 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.248 -23.847 8.135 25.296 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.584 5.584 2 C -0.210 4.210 3 Si 0.738 3.262 4 H -0.213 1.213 5 H -0.217 1.217 6 H -0.213 1.213 7 C -0.370 4.370 8 H 0.087 0.913 9 N -0.375 5.375 10 C 0.033 3.967 11 C -0.122 4.122 12 H 0.095 0.905 13 C -0.150 4.150 14 C -0.163 4.163 15 C -0.169 4.169 16 C 0.042 3.958 17 H 0.113 0.887 18 N -0.361 5.361 19 C 0.361 3.639 20 O -0.411 6.411 21 C -0.160 4.160 22 C -0.346 4.346 23 S 0.503 5.497 24 C -0.318 4.318 25 Cl 0.017 6.983 26 C -0.098 4.098 27 H 0.065 0.935 28 H 0.217 0.783 29 H 0.036 0.964 30 H 0.040 0.960 31 H 0.087 0.913 32 H 0.093 0.907 33 H 0.080 0.920 34 H 0.083 0.917 35 H 0.094 0.906 36 H 0.083 0.917 37 H 0.232 0.768 38 H 0.197 0.803 39 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges -2.414 -24.195 8.934 25.905 hybrid contribution 0.893 1.260 -0.715 1.702 sum -1.521 -22.935 8.220 24.411 Atomic orbital electron populations 1.69647 1.05091 1.25732 1.57917 1.24723 0.95529 0.97659 1.03076 0.86266 0.78523 0.83512 0.77888 1.21255 1.21699 1.21285 1.19193 0.91035 0.84183 1.42561 0.91268 1.42313 1.05797 0.99846 1.89514 1.20737 0.92859 0.85109 0.97969 1.22224 0.97949 0.93355 0.98655 0.90486 1.22377 1.00740 0.95026 0.96851 1.22543 0.96810 0.96309 1.00647 1.22743 0.97997 0.99115 0.97010 1.21724 1.00327 0.90535 0.83248 0.88654 1.46034 1.18697 1.41186 1.30228 1.17463 0.84781 0.79387 0.82255 1.90810 1.20024 1.65354 1.64933 1.20103 0.94302 1.01760 0.99823 1.25838 1.01358 1.05520 1.01901 1.83205 1.09783 1.31966 1.24755 1.25102 1.00975 1.04292 1.01438 1.98380 1.83413 1.52287 1.64175 1.21167 1.01390 0.94545 0.92685 0.93505 0.78284 0.96406 0.95968 0.91259 0.90703 0.92036 0.91694 0.90630 0.91680 0.76775 0.80318 0.81914 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 37. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -28.03 13.06 55.49 0.72 -27.30 16 2 C -0.01 -0.40 5.50 -17.43 -0.10 -0.50 16 3 Si 0.91 22.46 29.55 -169.99 -5.02 17.44 16 4 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 5 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 6 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 7 C -0.24 -6.68 9.99 -15.06 -0.15 -6.83 16 8 H 0.07 1.90 7.83 -52.49 -0.41 1.48 16 9 N -0.73 -18.19 5.45 -59.91 -0.33 -18.52 16 10 C 0.16 3.20 5.31 -4.04 -0.02 3.18 16 11 C -0.10 -1.55 2.73 -89.50 -0.24 -1.80 16 12 H 0.08 1.15 7.62 -51.93 -0.40 0.76 16 13 C -0.11 -1.61 6.08 -25.07 -0.15 -1.76 16 14 C -0.13 -1.43 6.91 -24.73 -0.17 -1.60 16 15 C -0.13 -1.57 6.54 -25.07 -0.16 -1.74 16 16 C 0.15 1.97 2.90 -66.81 -0.19 1.78 16 17 H 0.10 1.49 7.10 -51.93 -0.37 1.12 16 18 N -0.71 -8.33 5.00 -53.86 -0.27 -8.60 16 19 C 0.58 7.58 7.79 -12.63 -0.10 7.48 16 20 O -0.53 -8.91 16.45 5.24 0.09 -8.82 16 21 C -0.14 -1.50 5.98 -104.63 -0.63 -2.12 16 22 C -0.21 -1.62 10.38 29.92 0.31 -1.31 16 23 S 0.24 1.66 23.02 -107.50 -2.47 -0.82 16 24 C -0.18 -1.55 7.01 28.89 0.20 -1.35 16 25 Cl -0.01 -0.09 29.27 -51.86 -1.52 -1.61 16 26 C -0.07 -0.69 10.04 -38.97 -0.39 -1.08 16 27 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 28 H 0.38 9.91 7.55 -40.82 -0.31 9.60 16 29 H 0.02 0.38 8.14 -51.93 -0.42 -0.05 16 30 H 0.02 0.45 8.00 -51.93 -0.42 0.04 16 31 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 32 H 0.07 1.19 7.76 -51.93 -0.40 0.79 16 33 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 34 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 35 H 0.08 0.92 8.14 -51.93 -0.42 0.49 16 36 H 0.06 0.78 8.04 -51.93 -0.42 0.36 16 37 H 0.40 3.66 6.82 -40.82 -0.28 3.38 16 38 H 0.18 0.97 7.01 -52.49 -0.37 0.60 16 39 H 0.16 1.68 8.06 -52.49 -0.42 1.26 16 LS Contribution 355.08 15.07 5.35 5.35 Total: -1.00 -32.23 355.08 -10.28 -42.52 By element: Atomic # 1 Polarization: 13.05 SS G_CDS: -5.04 Total: 8.01 kcal Atomic # 6 Polarization: -5.86 SS G_CDS: -1.79 Total: -7.65 kcal Atomic # 7 Polarization: -54.55 SS G_CDS: 0.13 Total: -54.42 kcal Atomic # 8 Polarization: -8.91 SS G_CDS: 0.09 Total: -8.82 kcal Atomic # 14 Polarization: 22.46 SS G_CDS: -5.02 Total: 17.44 kcal Atomic # 16 Polarization: 1.66 SS G_CDS: -2.47 Total: -0.82 kcal Atomic # 17 Polarization: -0.09 SS G_CDS: -1.52 Total: -1.61 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -32.23 -10.28 -42.52 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699031926.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.733 kcal (2) G-P(sol) polarization free energy of solvation -32.235 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.502 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.282 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.517 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.784 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.71 seconds