Wall clock time and date at job start Tue Mar 31 2020 15:42:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86797 * 119.99662 * 2 1 4 4 H 1.48503 * 109.47161 * 239.99599 * 3 2 1 5 5 H 1.48505 * 109.47404 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47361 * 119.99689 * 3 2 1 7 7 C 1.38807 * 120.00272 * 179.97438 * 2 1 3 8 8 H 1.07993 * 120.00400 * 180.02562 * 7 2 1 9 9 N 1.36940 * 119.99889 * 359.97438 * 7 2 1 10 10 C 1.46500 * 120.00092 * 179.97438 * 9 7 2 11 11 C 1.53001 * 109.47035 * 180.02562 * 10 9 7 12 12 H 1.08997 * 110.01633 * 306.39196 * 11 10 9 13 13 C 1.54262 * 110.03157 * 67.83637 * 11 10 9 14 14 C 1.54898 * 104.19273 * 142.89305 * 13 11 10 15 15 C 1.54893 * 102.74705 * 322.05592 * 14 13 11 16 16 C 1.53879 * 110.02855 * 185.00490 * 11 10 9 17 17 H 1.09005 * 110.03480 * 0.04791 * 16 11 10 18 18 N 1.46498 * 110.03045 * 121.42988 * 16 11 10 19 19 C 1.34777 * 119.99828 * 204.71910 * 18 16 11 20 20 O 1.21643 * 119.99981 * 0.28057 * 19 18 16 21 21 C 1.47188 * 120.00049 * 180.27659 * 19 18 16 22 22 C 1.35963 * 123.45341 * 0.03180 * 21 19 18 23 23 S 1.70442 * 110.84358 * 179.97438 * 22 21 19 24 24 C 1.75502 * 92.45796 * 359.97438 * 23 22 21 25 25 Cl 1.73594 * 124.72167 * 180.02562 * 24 23 22 26 26 C 1.32893 * 110.55997 * 359.73996 * 24 23 22 27 27 H 0.97005 * 120.00217 * 0.02562 * 1 2 3 28 28 H 0.97003 * 119.99880 * 0.02562 * 9 7 2 29 29 H 1.09000 * 109.46670 * 60.00514 * 10 9 7 30 30 H 1.09002 * 109.47281 * 300.00964 * 10 9 7 31 31 H 1.08997 * 110.48915 * 261.56953 * 13 11 10 32 32 H 1.09004 * 110.48793 * 24.08695 * 13 11 10 33 33 H 1.08997 * 110.75448 * 80.37556 * 14 13 11 34 34 H 1.08999 * 110.75041 * 203.56218 * 14 13 11 35 35 H 1.08997 * 110.48423 * 279.26168 * 15 14 13 36 36 H 1.09000 * 110.48202 * 156.62528 * 15 14 13 37 37 H 0.97001 * 120.00384 * 25.00357 * 18 16 11 38 38 H 1.07997 * 124.57969 * 359.97438 * 22 21 19 39 39 H 1.08001 * 123.47892 * 180.22923 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.1040 1.6964 -1.2125 5 1 1.2851 2.7465 -0.0006 6 1 3.1038 1.6966 1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0010 9 7 1.3257 -2.3880 0.0016 10 6 2.0582 -3.6568 0.0016 11 6 1.0639 -4.8197 0.0022 12 1 0.3600 -4.7082 0.8269 13 6 0.3044 -4.8663 -1.3397 14 6 0.1417 -6.3788 -1.6316 15 6 1.4876 -6.9683 -1.1413 16 6 1.8162 -6.1561 0.1284 17 1 2.8895 -5.9761 0.1900 18 7 1.3597 -6.8785 1.3183 19 6 2.1674 -7.7807 1.9100 20 8 3.2773 -7.9915 1.4590 21 6 1.7066 -8.5109 3.1020 22 6 0.4816 -8.3313 3.6640 23 16 0.2854 -9.3379 5.0253 24 6 1.8899 -10.0251 4.8427 25 17 2.5732 -11.2321 5.8866 26 6 2.5067 -9.4973 3.7906 27 1 -0.4851 0.8401 -0.0004 28 1 0.3556 -2.3880 0.0016 29 1 2.6854 -3.7140 0.8912 30 1 2.6843 -3.7148 -0.8888 31 1 -0.6708 -4.3894 -1.2428 32 1 0.8873 -4.3848 -2.1249 33 1 -0.6914 -6.7941 -1.0646 34 1 0.0061 -6.5537 -2.6988 35 1 2.2624 -6.8282 -1.8950 36 1 1.3756 -8.0253 -0.8998 37 1 0.4747 -6.7105 1.6780 38 1 -0.2661 -7.6437 3.2973 39 1 3.5046 -9.7742 3.4842 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001699031926.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:42:57 Heat of formation + Delta-G solvation = -30.931174 kcal Electronic energy + Delta-G solvation = -22629.883820 eV Core-core repulsion = 19109.769177 eV Total energy + Delta-G solvation = -3520.114642 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 328.075 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.31889 -39.48590 -38.27202 -37.32017 -36.33207 -34.69456 -33.26007 -30.91374 -30.17472 -28.66016 -26.50581 -25.85946 -23.97345 -22.80492 -21.48643 -21.16901 -20.20625 -19.48671 -18.94364 -18.09779 -17.46153 -16.54016 -16.39659 -16.09970 -15.73405 -15.58769 -15.23364 -14.98412 -14.68218 -14.64179 -14.57143 -14.36835 -13.76964 -13.38237 -13.19659 -12.81050 -12.71232 -12.67332 -12.51988 -12.47897 -12.19938 -11.93496 -11.87800 -11.81943 -11.72494 -11.62926 -11.45740 -11.03934 -10.92242 -10.16097 -9.95973 -9.50324 -9.00362 -7.96024 -5.24271 -0.44297 -0.01663 0.65604 0.70428 1.08835 1.46919 1.49363 1.55568 2.14475 2.24153 2.55618 3.36933 3.46578 3.67910 3.79662 3.84976 3.92639 4.14436 4.16090 4.41342 4.46835 4.49842 4.53837 4.64799 4.67618 4.70147 4.77315 4.95040 4.99480 5.02460 5.06005 5.18947 5.25974 5.36972 5.47797 5.50622 5.59058 6.26577 6.49466 7.16401 7.33687 8.08049 8.33968 9.26961 Molecular weight = 328.08amu Principal moments of inertia in cm(-1) A = 0.016281 B = 0.002442 C = 0.002292 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1719.362972 B =11465.050350 C =12212.990316 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.966 5.966 2 C -0.071 4.071 3 Si 0.971 3.029 4 H -0.279 1.279 5 H -0.292 1.292 6 H -0.280 1.280 7 C -0.249 4.249 8 H 0.069 0.931 9 N -0.739 5.739 10 C 0.161 3.839 11 C -0.090 4.090 12 H 0.083 0.917 13 C -0.111 4.111 14 C -0.110 4.110 15 C -0.124 4.124 16 C 0.153 3.847 17 H 0.070 0.930 18 N -0.701 5.701 19 C 0.576 3.424 20 O -0.579 6.579 21 C -0.171 4.171 22 C -0.194 4.194 23 S 0.306 5.694 24 C -0.188 4.188 25 Cl -0.009 7.009 26 C -0.083 4.083 27 H 0.252 0.748 28 H 0.377 0.623 29 H 0.008 0.992 30 H 0.018 0.982 31 H 0.064 0.936 32 H 0.054 0.946 33 H 0.081 0.919 34 H 0.078 0.922 35 H 0.072 0.928 36 H 0.071 0.929 37 H 0.412 0.588 38 H 0.207 0.793 39 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.642 -24.697 8.878 26.495 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.616 5.616 2 C -0.263 4.263 3 Si 0.800 3.200 4 H -0.205 1.205 5 H -0.218 1.218 6 H -0.206 1.206 7 C -0.381 4.381 8 H 0.087 0.913 9 N -0.382 5.382 10 C 0.034 3.966 11 C -0.109 4.109 12 H 0.102 0.898 13 C -0.149 4.149 14 C -0.148 4.148 15 C -0.163 4.163 16 C 0.048 3.952 17 H 0.088 0.912 18 N -0.352 5.352 19 C 0.363 3.637 20 O -0.460 6.460 21 C -0.189 4.189 22 C -0.333 4.333 23 S 0.570 5.430 24 C -0.331 4.331 25 Cl 0.020 6.980 26 C -0.114 4.114 27 H 0.061 0.939 28 H 0.210 0.790 29 H 0.026 0.974 30 H 0.036 0.964 31 H 0.083 0.917 32 H 0.073 0.927 33 H 0.100 0.900 34 H 0.097 0.903 35 H 0.091 0.909 36 H 0.090 0.910 37 H 0.249 0.751 38 H 0.224 0.776 39 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -3.812 -25.072 9.691 27.149 hybrid contribution 1.313 1.474 -0.867 2.156 sum -2.499 -23.599 8.823 25.318 Atomic orbital electron populations 1.69787 1.06383 1.26201 1.59238 1.25504 0.96431 1.00859 1.03530 0.85256 0.77298 0.79363 0.78106 1.20526 1.21812 1.20611 1.19554 0.91349 0.85569 1.41645 0.91268 1.42449 1.05637 1.00734 1.89336 1.20838 0.93656 0.85081 0.97019 1.22055 0.96977 0.92217 0.99659 0.89842 1.22313 0.99795 0.97268 0.95493 1.22475 0.96873 0.93536 1.01884 1.22687 0.98447 0.99161 0.95975 1.21473 0.98668 0.90218 0.84877 0.91171 1.45861 1.19215 1.40528 1.29594 1.17831 0.84127 0.79131 0.82618 1.90782 1.21971 1.66900 1.66396 1.19819 0.95815 1.03208 1.00033 1.26224 1.00569 1.04999 1.01513 1.83059 1.07224 1.29858 1.22824 1.25274 1.02285 1.04346 1.01150 1.98381 1.83645 1.52139 1.63855 1.21114 1.01343 0.95344 0.93584 0.93880 0.79025 0.97402 0.96437 0.91720 0.92721 0.90002 0.90324 0.90914 0.90996 0.75052 0.77648 0.83216 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -58.25 13.06 21.65 0.28 -57.96 16 2 C -0.07 -4.05 5.50 84.86 0.47 -3.59 16 3 Si 0.97 46.22 29.55 68.60 2.03 48.25 16 4 H -0.28 -12.87 7.11 99.48 0.71 -12.16 16 5 H -0.29 -13.86 7.11 99.48 0.71 -13.15 16 6 H -0.28 -12.93 7.11 99.48 0.71 -12.23 16 7 C -0.25 -14.07 9.99 84.03 0.84 -13.23 16 8 H 0.07 3.82 7.83 -2.91 -0.02 3.79 16 9 N -0.74 -37.24 5.45 -343.45 -1.87 -39.11 16 10 C 0.16 6.50 5.31 86.38 0.46 6.96 16 11 C -0.09 -2.68 2.73 -10.07 -0.03 -2.71 16 12 H 0.08 2.40 7.62 -2.39 -0.02 2.38 16 13 C -0.11 -3.08 6.08 31.67 0.19 -2.89 16 14 C -0.11 -2.26 6.91 31.89 0.22 -2.04 16 15 C -0.12 -2.84 6.54 31.67 0.21 -2.63 16 16 C 0.15 4.07 2.90 45.72 0.13 4.20 16 17 H 0.07 2.26 7.10 -2.38 -0.02 2.24 16 18 N -0.70 -15.64 5.00 -442.57 -2.21 -17.85 16 19 C 0.58 15.03 7.79 86.59 0.67 15.70 16 20 O -0.58 -19.99 16.45 -4.17 -0.07 -20.06 16 21 C -0.17 -3.44 5.98 -19.87 -0.12 -3.56 16 22 C -0.19 -2.50 10.38 67.29 0.70 -1.81 16 23 S 0.31 3.35 23.02 -56.49 -1.30 2.05 16 24 C -0.19 -3.08 7.01 66.64 0.47 -2.61 16 25 Cl -0.01 -0.13 29.27 -2.72 -0.08 -0.21 16 26 C -0.08 -1.69 10.04 22.68 0.23 -1.46 16 27 H 0.25 14.76 8.31 -92.70 -0.77 13.99 16 28 H 0.38 19.74 7.55 -92.71 -0.70 19.04 16 29 H 0.01 0.34 8.14 -2.39 -0.02 0.32 16 30 H 0.02 0.73 8.00 -2.39 -0.02 0.71 16 31 H 0.06 1.86 8.14 -2.39 -0.02 1.85 16 32 H 0.05 1.74 7.76 -2.38 -0.02 1.72 16 33 H 0.08 1.40 8.14 -2.39 -0.02 1.38 16 34 H 0.08 1.45 8.14 -2.39 -0.02 1.44 16 35 H 0.07 1.71 8.14 -2.39 -0.02 1.69 16 36 H 0.07 1.58 8.04 -2.39 -0.02 1.57 16 37 H 0.41 6.62 6.82 -92.71 -0.63 5.99 16 38 H 0.21 1.40 7.01 -2.91 -0.02 1.38 16 39 H 0.15 3.30 8.06 -2.91 -0.02 3.28 16 Total: -1.00 -70.32 355.08 0.98 -69.34 By element: Atomic # 1 Polarization: 25.46 SS G_CDS: -0.24 Total: 25.22 kcal Atomic # 6 Polarization: -14.10 SS G_CDS: 4.44 Total: -9.66 kcal Atomic # 7 Polarization: -111.12 SS G_CDS: -3.80 Total: -114.92 kcal Atomic # 8 Polarization: -19.99 SS G_CDS: -0.07 Total: -20.06 kcal Atomic # 14 Polarization: 46.22 SS G_CDS: 2.03 Total: 48.25 kcal Atomic # 16 Polarization: 3.35 SS G_CDS: -1.30 Total: 2.05 kcal Atomic # 17 Polarization: -0.13 SS G_CDS: -0.08 Total: -0.21 kcal Total: -70.32 0.98 -69.34 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699031926.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.412 kcal (2) G-P(sol) polarization free energy of solvation -70.322 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.910 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.979 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.343 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.931 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds