Wall clock time and date at job start Tue Mar 31 2020 15:43:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86797 * 119.99964 * 2 1 4 4 H 1.48498 * 109.47241 * 269.99828 * 3 2 1 5 5 H 1.48497 * 109.47195 * 29.99644 * 3 2 1 6 6 H 1.48504 * 109.47316 * 149.99941 * 3 2 1 7 7 C 1.38810 * 119.99945 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99940 * 0.02562 * 7 2 1 9 9 N 1.36936 * 119.99931 * 180.02562 * 7 2 1 10 10 C 1.46500 * 120.00130 * 180.02562 * 9 7 2 11 11 C 1.53000 * 109.47238 * 180.02562 * 10 9 7 12 12 H 1.09002 * 110.01554 * 306.39088 * 11 10 9 13 13 C 1.54266 * 110.07584 * 67.80610 * 11 10 9 14 14 C 1.54893 * 104.19500 * 142.92024 * 13 11 10 15 15 C 1.54887 * 102.74533 * 322.05712 * 14 13 11 16 16 C 1.53872 * 110.03213 * 185.00094 * 11 10 9 17 17 H 1.09003 * 110.03622 * 121.37719 * 16 11 10 18 18 N 1.46498 * 110.03563 * 359.94537 * 16 11 10 19 19 C 1.34777 * 120.00421 * 156.37932 * 18 16 11 20 20 O 1.21634 * 119.99588 * 0.02562 * 19 18 16 21 21 C 1.47176 * 119.99927 * 180.02562 * 19 18 16 22 22 C 1.35964 * 123.46340 * 0.02916 * 21 19 18 23 23 S 1.70436 * 110.85302 * 179.97438 * 22 21 19 24 24 C 1.75505 * 92.45633 * 359.97438 * 23 22 21 25 25 Cl 1.73594 * 124.72416 * 180.02562 * 24 23 22 26 26 C 1.32892 * 110.55864 * 359.75214 * 24 23 22 27 27 H 0.97004 * 120.00287 * 359.97438 * 1 2 3 28 28 H 0.97006 * 120.00059 * 0.02562 * 9 7 2 29 29 H 1.08997 * 109.47298 * 59.99994 * 10 9 7 30 30 H 1.09007 * 109.47072 * 299.99613 * 10 9 7 31 31 H 1.09002 * 110.48438 * 261.59643 * 13 11 10 32 32 H 1.08998 * 110.48431 * 24.10471 * 13 11 10 33 33 H 1.09001 * 110.75228 * 203.74448 * 14 13 11 34 34 H 1.09000 * 110.75571 * 80.37081 * 14 13 11 35 35 H 1.09001 * 110.48816 * 279.26329 * 15 14 13 36 36 H 1.09004 * 110.48531 * 156.62545 * 15 14 13 37 37 H 0.97006 * 119.99781 * 336.38308 * 18 16 11 38 38 H 1.08002 * 124.57486 * 359.97438 * 22 21 19 39 39 H 1.08000 * 123.47947 * 180.21627 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 2.4977 2.0464 -1.4000 5 1 1.4476 2.6527 0.6999 6 1 3.5477 1.4402 0.7001 7 6 2.0102 -1.2021 0.0005 8 1 1.4702 -2.1375 0.0005 9 7 3.3796 -1.2021 0.0011 10 6 4.1121 -2.4709 0.0011 11 6 5.6163 -2.1913 0.0024 12 1 5.8727 -1.5253 -0.8216 13 6 6.0359 -1.5570 1.3445 14 6 7.4271 -2.1721 1.6369 15 6 7.2650 -3.6323 1.1464 16 6 6.3978 -3.5108 -0.1236 17 1 7.0334 -3.4853 -1.0088 18 7 5.4673 -4.6393 -0.2058 19 6 5.8575 -5.7941 -0.7808 20 8 6.9825 -5.8994 -1.2311 21 6 4.9224 -6.9276 -0.8637 22 6 3.6507 -6.8869 -0.3846 23 16 2.8546 -8.3704 -0.6500 24 6 4.2624 -9.0731 -1.4276 25 17 4.3393 -10.6873 -2.0616 26 6 5.2595 -8.1955 -1.4689 27 1 -0.4851 0.8401 0.0004 28 1 3.8646 -0.3620 0.0014 29 1 3.8492 -3.0422 -0.8891 30 1 3.8485 -3.0426 0.8909 31 1 6.1104 -0.4738 1.2478 32 1 5.3271 -1.8211 2.1293 33 1 7.6446 -2.1452 2.7047 34 1 8.2035 -1.6582 1.0702 35 1 6.7560 -4.2336 1.8998 36 1 8.2365 -4.0637 0.9052 37 1 4.5702 -4.5554 0.1537 38 1 3.2050 -6.0302 0.0989 39 1 6.2236 -8.4093 -1.9061 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001699031927.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:43:02 Heat of formation + Delta-G solvation = 0.297404 kcal Electronic energy + Delta-G solvation = -23071.897347 eV Core-core repulsion = 19553.136877 eV Total energy + Delta-G solvation = -3518.760470 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 328.075 amu Computer time = 1.92 seconds Orbital eigenvalues (eV) -40.35741 -38.50354 -37.40712 -36.46708 -34.60946 -33.75550 -31.63033 -30.08131 -29.07001 -27.55934 -25.15451 -24.70894 -22.29086 -21.90033 -20.63620 -19.60891 -19.31949 -18.54936 -17.57720 -17.33441 -15.91923 -15.55317 -15.13143 -14.97099 -14.49630 -14.39003 -13.97830 -13.86952 -13.82735 -13.60294 -13.27680 -12.92099 -12.73345 -12.35264 -11.97600 -11.87038 -11.78074 -11.67695 -11.07327 -11.02303 -11.01134 -10.94198 -10.57955 -10.55869 -10.40862 -10.12795 -9.97484 -9.66970 -9.19930 -9.10272 -8.95673 -8.72939 -7.32457 -5.84647 -3.20804 0.36933 0.73615 1.45538 1.60439 1.85487 3.17209 3.24119 3.32038 3.35090 3.40718 4.47859 4.52656 4.57331 4.68335 4.83068 4.94907 4.97030 5.25375 5.32270 5.40995 5.48510 5.50764 5.53226 5.60433 5.70623 5.73156 5.80467 5.82822 5.95040 6.02827 6.15590 6.25694 6.37697 6.45263 6.55239 6.62522 7.47816 7.89079 8.16923 8.34002 9.12543 9.85143 10.04676 11.33468 Molecular weight = 328.08amu Principal moments of inertia in cm(-1) A = 0.013086 B = 0.003233 C = 0.002680 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2139.199470 B = 8658.677736 C =10446.339643 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.007 3.993 3 Si 0.884 3.116 4 H -0.284 1.284 5 H -0.291 1.291 6 H -0.276 1.276 7 C -0.248 4.248 8 H 0.089 0.911 9 N -0.751 5.751 10 C 0.160 3.840 11 C -0.113 4.113 12 H 0.083 0.917 13 C -0.115 4.115 14 C -0.124 4.124 15 C -0.132 4.132 16 C 0.151 3.849 17 H 0.092 0.908 18 N -0.715 5.715 19 C 0.578 3.422 20 O -0.540 6.540 21 C -0.147 4.147 22 C -0.203 4.203 23 S 0.247 5.753 24 C -0.178 4.178 25 Cl -0.013 7.013 26 C -0.067 4.067 27 H 0.260 0.740 28 H 0.362 0.638 29 H 0.030 0.970 30 H 0.024 0.976 31 H 0.066 0.934 32 H 0.074 0.926 33 H 0.066 0.934 34 H 0.066 0.934 35 H 0.069 0.931 36 H 0.069 0.931 37 H 0.406 0.594 38 H 0.182 0.818 39 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.540 -16.895 0.875 20.479 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.189 4.189 3 Si 0.714 3.286 4 H -0.210 1.210 5 H -0.217 1.217 6 H -0.202 1.202 7 C -0.378 4.378 8 H 0.107 0.893 9 N -0.397 5.397 10 C 0.033 3.967 11 C -0.132 4.132 12 H 0.101 0.899 13 C -0.153 4.153 14 C -0.162 4.162 15 C -0.170 4.170 16 C 0.046 3.954 17 H 0.110 0.890 18 N -0.368 5.368 19 C 0.363 3.637 20 O -0.418 6.418 21 C -0.165 4.165 22 C -0.342 4.342 23 S 0.511 5.489 24 C -0.321 4.321 25 Cl 0.015 6.985 26 C -0.098 4.098 27 H 0.070 0.930 28 H 0.195 0.805 29 H 0.047 0.953 30 H 0.042 0.958 31 H 0.085 0.915 32 H 0.093 0.907 33 H 0.085 0.915 34 H 0.085 0.915 35 H 0.088 0.912 36 H 0.087 0.913 37 H 0.245 0.755 38 H 0.199 0.801 39 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges 10.642 -17.734 0.816 20.698 hybrid contribution 1.424 1.778 -0.229 2.289 sum 12.065 -15.956 0.587 20.013 Atomic orbital electron populations 1.69695 1.05124 1.25949 1.57205 1.24667 0.95227 0.97269 1.01786 0.86553 0.79246 0.84919 0.77841 1.21046 1.21703 1.20226 1.19013 0.80551 0.94697 1.43536 0.89300 1.42661 1.03985 1.02020 1.91028 1.20673 0.88171 0.89870 0.98027 1.22278 0.96527 0.95339 0.99037 0.89862 1.22406 0.96126 0.99993 0.96793 1.22480 0.97638 0.95230 1.00823 1.22772 0.99961 0.97318 0.96996 1.21647 0.90311 0.84346 0.99070 0.89024 1.46250 1.17858 1.12603 1.60100 1.17477 0.86396 0.81987 0.77790 1.90777 1.20324 1.82673 1.48056 1.20041 0.94417 0.95853 1.06206 1.25927 0.98506 1.04591 1.05138 1.83286 1.11287 1.01690 1.52612 1.25122 1.01232 0.93275 1.12480 1.98373 1.98025 1.17110 1.84952 1.21121 0.99930 0.90119 0.98605 0.92977 0.80493 0.95255 0.95805 0.91516 0.90741 0.91482 0.91477 0.91186 0.91255 0.75483 0.80123 0.82054 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 40. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.51 13.97 55.49 0.78 -27.74 16 2 C 0.01 0.19 5.50 -17.43 -0.10 0.09 16 3 Si 0.88 21.50 27.74 -169.99 -4.71 16.78 16 4 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 5 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 6 H -0.28 -6.25 6.52 56.52 0.37 -5.88 16 7 C -0.25 -6.71 10.47 -15.06 -0.16 -6.87 16 8 H 0.09 2.54 8.06 -52.49 -0.42 2.12 16 9 N -0.75 -16.76 5.25 -59.91 -0.31 -17.08 16 10 C 0.16 2.78 4.18 -4.04 -0.02 2.76 16 11 C -0.11 -1.60 2.96 -89.50 -0.26 -1.86 16 12 H 0.08 1.21 8.14 -51.93 -0.42 0.78 16 13 C -0.12 -1.53 6.09 -25.07 -0.15 -1.68 16 14 C -0.12 -1.35 6.91 -24.74 -0.17 -1.52 16 15 C -0.13 -1.52 6.52 -25.07 -0.16 -1.69 16 16 C 0.15 1.96 3.20 -66.81 -0.21 1.74 16 17 H 0.09 1.26 7.61 -51.93 -0.40 0.87 16 18 N -0.71 -9.13 4.39 -53.87 -0.24 -9.36 16 19 C 0.58 8.00 7.78 -12.63 -0.10 7.91 16 20 O -0.54 -8.97 16.47 5.25 0.09 -8.89 16 21 C -0.15 -1.74 5.98 -104.63 -0.63 -2.37 16 22 C -0.20 -2.03 10.38 29.92 0.31 -1.72 16 23 S 0.25 2.17 23.02 -107.50 -2.47 -0.31 16 24 C -0.18 -1.78 7.01 28.89 0.20 -1.57 16 25 Cl -0.01 -0.12 29.27 -51.86 -1.52 -1.64 16 26 C -0.07 -0.74 10.04 -38.97 -0.39 -1.14 16 27 H 0.26 7.60 8.31 -40.82 -0.34 7.26 16 28 H 0.36 7.98 5.41 -40.82 -0.22 7.75 16 29 H 0.03 0.53 7.40 -51.93 -0.38 0.14 16 30 H 0.02 0.41 7.12 -51.92 -0.37 0.04 16 31 H 0.07 0.91 8.14 -51.93 -0.42 0.48 16 32 H 0.07 1.06 7.76 -51.93 -0.40 0.66 16 33 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 34 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 35 H 0.07 0.81 8.05 -51.93 -0.42 0.39 16 36 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 37 H 0.41 4.86 4.33 -40.82 -0.18 4.69 16 38 H 0.18 1.58 7.01 -52.49 -0.37 1.21 16 39 H 0.16 1.76 8.06 -52.49 -0.42 1.34 16 LS Contribution 347.70 15.07 5.24 5.24 Total: -1.00 -31.60 347.70 -9.86 -41.46 By element: Atomic # 1 Polarization: 14.30 SS G_CDS: -4.86 Total: 9.43 kcal Atomic # 6 Polarization: -6.07 SS G_CDS: -1.84 Total: -7.91 kcal Atomic # 7 Polarization: -54.40 SS G_CDS: 0.22 Total: -54.18 kcal Atomic # 8 Polarization: -8.97 SS G_CDS: 0.09 Total: -8.89 kcal Atomic # 14 Polarization: 21.50 SS G_CDS: -4.71 Total: 16.78 kcal Atomic # 16 Polarization: 2.17 SS G_CDS: -2.47 Total: -0.31 kcal Atomic # 17 Polarization: -0.12 SS G_CDS: -1.52 Total: -1.64 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -31.60 -9.86 -41.46 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699031927.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.758 kcal (2) G-P(sol) polarization free energy of solvation -31.601 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.157 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.860 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.461 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.297 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.92 seconds