Wall clock time and date at job start Tue Mar 31 2020 15:43:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86797 * 119.99964 * 2 1 4 4 H 1.48498 * 109.47241 * 269.99828 * 3 2 1 5 5 H 1.48497 * 109.47195 * 29.99644 * 3 2 1 6 6 H 1.48504 * 109.47316 * 149.99941 * 3 2 1 7 7 C 1.38810 * 119.99945 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99940 * 0.02562 * 7 2 1 9 9 N 1.36936 * 119.99931 * 180.02562 * 7 2 1 10 10 C 1.46500 * 120.00130 * 180.02562 * 9 7 2 11 11 C 1.53000 * 109.47238 * 180.02562 * 10 9 7 12 12 H 1.09002 * 110.01554 * 306.39088 * 11 10 9 13 13 C 1.54266 * 110.07584 * 67.80610 * 11 10 9 14 14 C 1.54893 * 104.19500 * 142.92024 * 13 11 10 15 15 C 1.54887 * 102.74533 * 322.05712 * 14 13 11 16 16 C 1.53872 * 110.03213 * 185.00094 * 11 10 9 17 17 H 1.09003 * 110.03622 * 121.37719 * 16 11 10 18 18 N 1.46498 * 110.03563 * 359.94537 * 16 11 10 19 19 C 1.34777 * 120.00421 * 156.37932 * 18 16 11 20 20 O 1.21634 * 119.99588 * 0.02562 * 19 18 16 21 21 C 1.47176 * 119.99927 * 180.02562 * 19 18 16 22 22 C 1.35964 * 123.46340 * 0.02916 * 21 19 18 23 23 S 1.70436 * 110.85302 * 179.97438 * 22 21 19 24 24 C 1.75505 * 92.45633 * 359.97438 * 23 22 21 25 25 Cl 1.73594 * 124.72416 * 180.02562 * 24 23 22 26 26 C 1.32892 * 110.55864 * 359.75214 * 24 23 22 27 27 H 0.97004 * 120.00287 * 359.97438 * 1 2 3 28 28 H 0.97006 * 120.00059 * 0.02562 * 9 7 2 29 29 H 1.08997 * 109.47298 * 59.99994 * 10 9 7 30 30 H 1.09007 * 109.47072 * 299.99613 * 10 9 7 31 31 H 1.09002 * 110.48438 * 261.59643 * 13 11 10 32 32 H 1.08998 * 110.48431 * 24.10471 * 13 11 10 33 33 H 1.09001 * 110.75228 * 203.74448 * 14 13 11 34 34 H 1.09000 * 110.75571 * 80.37081 * 14 13 11 35 35 H 1.09001 * 110.48816 * 279.26329 * 15 14 13 36 36 H 1.09004 * 110.48531 * 156.62545 * 15 14 13 37 37 H 0.97006 * 119.99781 * 336.38308 * 18 16 11 38 38 H 1.08002 * 124.57486 * 359.97438 * 22 21 19 39 39 H 1.08000 * 123.47947 * 180.21627 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 2.4977 2.0464 -1.4000 5 1 1.4476 2.6527 0.6999 6 1 3.5477 1.4402 0.7001 7 6 2.0102 -1.2021 0.0005 8 1 1.4702 -2.1375 0.0005 9 7 3.3796 -1.2021 0.0011 10 6 4.1121 -2.4709 0.0011 11 6 5.6163 -2.1913 0.0024 12 1 5.8727 -1.5253 -0.8216 13 6 6.0359 -1.5570 1.3445 14 6 7.4271 -2.1721 1.6369 15 6 7.2650 -3.6323 1.1464 16 6 6.3978 -3.5108 -0.1236 17 1 7.0334 -3.4853 -1.0088 18 7 5.4673 -4.6393 -0.2058 19 6 5.8575 -5.7941 -0.7808 20 8 6.9825 -5.8994 -1.2311 21 6 4.9224 -6.9276 -0.8637 22 6 3.6507 -6.8869 -0.3846 23 16 2.8546 -8.3704 -0.6500 24 6 4.2624 -9.0731 -1.4276 25 17 4.3393 -10.6873 -2.0616 26 6 5.2595 -8.1955 -1.4689 27 1 -0.4851 0.8401 0.0004 28 1 3.8646 -0.3620 0.0014 29 1 3.8492 -3.0422 -0.8891 30 1 3.8485 -3.0426 0.8909 31 1 6.1104 -0.4738 1.2478 32 1 5.3271 -1.8211 2.1293 33 1 7.6446 -2.1452 2.7047 34 1 8.2035 -1.6582 1.0702 35 1 6.7560 -4.2336 1.8998 36 1 8.2365 -4.0637 0.9052 37 1 4.5702 -4.5554 0.1537 38 1 3.2050 -6.0302 0.0989 39 1 6.2236 -8.4093 -1.9061 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001699031927.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:43:01 Heat of formation + Delta-G solvation = -18.898519 kcal Electronic energy + Delta-G solvation = -23072.729745 eV Core-core repulsion = 19553.136877 eV Total energy + Delta-G solvation = -3519.592867 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 328.075 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.42226 -39.55152 -38.28083 -37.33232 -36.35186 -34.80820 -33.55520 -30.97168 -30.51635 -28.54748 -26.41402 -25.91679 -23.97006 -22.90102 -21.60619 -20.69261 -20.50205 -19.73120 -19.12389 -18.30123 -17.02140 -16.73543 -16.39930 -16.08612 -15.93343 -15.59471 -15.30518 -14.99462 -14.71368 -14.64806 -14.60353 -14.38146 -13.81008 -13.59389 -13.49354 -12.93796 -12.84857 -12.67633 -12.62004 -12.32805 -12.06589 -11.94770 -11.82408 -11.81467 -11.74646 -11.57319 -11.47018 -11.06633 -10.96433 -10.15772 -9.97447 -9.53374 -9.28724 -8.01452 -5.34598 -0.46495 -0.03390 0.65121 0.69860 1.07242 1.39365 1.42040 1.49367 2.15738 2.22732 2.49673 3.29776 3.34781 3.66207 3.76596 3.78650 3.86397 3.99896 4.12614 4.35376 4.45749 4.48067 4.50107 4.54733 4.61025 4.68100 4.75573 4.89247 4.94606 4.97592 5.08004 5.22070 5.22613 5.32256 5.48707 5.51808 5.76902 6.21982 6.43585 7.09017 7.11781 7.85172 8.03508 9.19607 Molecular weight = 328.08amu Principal moments of inertia in cm(-1) A = 0.013086 B = 0.003233 C = 0.002680 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2139.199470 B = 8658.677736 C =10446.339643 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.982 5.982 2 C -0.062 4.062 3 Si 0.949 3.051 4 H -0.282 1.282 5 H -0.298 1.298 6 H -0.247 1.247 7 C -0.232 4.232 8 H 0.062 0.938 9 N -0.754 5.754 10 C 0.158 3.842 11 C -0.104 4.104 12 H 0.083 0.917 13 C -0.116 4.116 14 C -0.113 4.113 15 C -0.126 4.126 16 C 0.153 3.847 17 H 0.084 0.916 18 N -0.711 5.711 19 C 0.578 3.422 20 O -0.574 6.574 21 C -0.169 4.169 22 C -0.202 4.202 23 S 0.298 5.702 24 C -0.184 4.184 25 Cl -0.005 7.005 26 C -0.079 4.079 27 H 0.257 0.743 28 H 0.366 0.634 29 H 0.027 0.973 30 H 0.034 0.966 31 H 0.066 0.934 32 H 0.064 0.936 33 H 0.082 0.918 34 H 0.078 0.922 35 H 0.071 0.929 36 H 0.070 0.930 37 H 0.410 0.590 38 H 0.192 0.808 39 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.848 -16.986 1.543 21.353 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.633 5.633 2 C -0.254 4.254 3 Si 0.777 3.223 4 H -0.209 1.209 5 H -0.225 1.225 6 H -0.171 1.171 7 C -0.363 4.363 8 H 0.080 0.920 9 N -0.399 5.399 10 C 0.032 3.968 11 C -0.124 4.124 12 H 0.101 0.899 13 C -0.153 4.153 14 C -0.150 4.150 15 C -0.165 4.165 16 C 0.048 3.952 17 H 0.102 0.898 18 N -0.364 5.364 19 C 0.365 3.635 20 O -0.455 6.455 21 C -0.187 4.187 22 C -0.341 4.341 23 S 0.563 5.437 24 C -0.327 4.327 25 Cl 0.023 6.977 26 C -0.109 4.109 27 H 0.066 0.934 28 H 0.199 0.801 29 H 0.044 0.956 30 H 0.052 0.948 31 H 0.085 0.915 32 H 0.083 0.917 33 H 0.100 0.900 34 H 0.097 0.903 35 H 0.089 0.911 36 H 0.089 0.911 37 H 0.249 0.751 38 H 0.209 0.791 39 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges 11.992 -17.855 1.495 21.560 hybrid contribution 0.942 1.643 -0.453 1.948 sum 12.935 -16.212 1.042 20.765 Atomic orbital electron populations 1.69869 1.07087 1.26598 1.59748 1.25456 0.96035 1.01130 1.02768 0.85489 0.78953 0.79935 0.77928 1.20889 1.22545 1.17149 1.19040 0.82595 0.93563 1.41073 0.91964 1.42670 1.02447 1.04003 1.90821 1.20839 0.89945 0.87901 0.98116 1.22192 0.94100 0.96167 0.99915 0.89883 1.22391 0.97341 1.00019 0.95594 1.22437 0.96402 0.94213 1.01979 1.22724 0.99634 0.98025 0.96103 1.21626 0.90213 0.83677 0.99653 0.89821 1.46220 1.17967 1.12425 1.59764 1.17743 0.86240 0.82473 0.77076 1.90751 1.21781 1.83303 1.49638 1.19903 0.94883 0.95670 1.08202 1.26147 0.98059 1.05768 1.04147 1.83159 1.09613 0.99990 1.50919 1.25255 1.01642 0.93553 1.12274 1.98377 1.98047 1.16387 1.84845 1.21102 1.00265 0.90310 0.99264 0.93431 0.80069 0.95555 0.94782 0.91526 0.91729 0.89969 0.90315 0.91057 0.91085 0.75083 0.79059 0.82517 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.98 -61.22 13.97 21.65 0.30 -60.91 16 2 C -0.06 -3.54 5.50 84.86 0.47 -3.08 16 3 Si 0.95 43.91 27.74 68.60 1.90 45.81 16 4 H -0.28 -12.92 7.11 99.48 0.71 -12.22 16 5 H -0.30 -14.13 7.11 99.48 0.71 -13.42 16 6 H -0.25 -10.11 6.52 99.48 0.65 -9.46 16 7 C -0.23 -12.50 10.47 84.03 0.88 -11.62 16 8 H 0.06 3.63 8.06 -2.91 -0.02 3.60 16 9 N -0.75 -32.59 5.25 -343.45 -1.80 -34.39 16 10 C 0.16 5.28 4.18 86.38 0.36 5.65 16 11 C -0.10 -2.77 2.96 -10.07 -0.03 -2.80 16 12 H 0.08 2.24 8.14 -2.39 -0.02 2.22 16 13 C -0.12 -2.78 6.09 31.67 0.19 -2.58 16 14 C -0.11 -2.12 6.91 31.89 0.22 -1.90 16 15 C -0.13 -2.65 6.52 31.67 0.21 -2.45 16 16 C 0.15 3.76 3.20 45.72 0.15 3.90 16 17 H 0.08 2.23 7.61 -2.39 -0.02 2.21 16 18 N -0.71 -17.54 4.39 -442.60 -1.95 -19.49 16 19 C 0.58 15.84 7.78 86.59 0.67 16.51 16 20 O -0.57 -19.16 16.47 -4.14 -0.07 -19.23 16 21 C -0.17 -3.91 5.98 -19.87 -0.12 -4.02 16 22 C -0.20 -3.80 10.38 67.29 0.70 -3.10 16 23 S 0.30 4.72 23.02 -56.49 -1.30 3.42 16 24 C -0.18 -3.47 7.01 66.64 0.47 -3.00 16 25 Cl -0.01 -0.09 29.27 -2.72 -0.08 -0.17 16 26 C -0.08 -1.73 10.04 22.68 0.23 -1.50 16 27 H 0.26 15.34 8.31 -92.71 -0.77 14.57 16 28 H 0.37 15.26 5.41 -92.70 -0.50 14.76 16 29 H 0.03 0.92 7.40 -2.39 -0.02 0.90 16 30 H 0.03 1.10 7.12 -2.38 -0.02 1.08 16 31 H 0.07 1.61 8.14 -2.39 -0.02 1.60 16 32 H 0.06 1.69 7.76 -2.39 -0.02 1.67 16 33 H 0.08 1.34 8.14 -2.39 -0.02 1.32 16 34 H 0.08 1.33 8.14 -2.39 -0.02 1.32 16 35 H 0.07 1.49 8.05 -2.39 -0.02 1.47 16 36 H 0.07 1.50 8.14 -2.38 -0.02 1.48 16 37 H 0.41 9.38 4.33 -92.70 -0.40 8.98 16 38 H 0.19 3.07 7.01 -2.91 -0.02 3.05 16 39 H 0.16 3.48 8.06 -2.91 -0.02 3.46 16 Total: -1.00 -67.89 347.70 1.53 -66.36 By element: Atomic # 1 Polarization: 28.45 SS G_CDS: 0.13 Total: 28.58 kcal Atomic # 6 Polarization: -14.38 SS G_CDS: 4.39 Total: -9.99 kcal Atomic # 7 Polarization: -111.35 SS G_CDS: -3.45 Total: -114.79 kcal Atomic # 8 Polarization: -19.16 SS G_CDS: -0.07 Total: -19.23 kcal Atomic # 14 Polarization: 43.91 SS G_CDS: 1.90 Total: 45.81 kcal Atomic # 16 Polarization: 4.72 SS G_CDS: -1.30 Total: 3.42 kcal Atomic # 17 Polarization: -0.09 SS G_CDS: -0.08 Total: -0.17 kcal Total: -67.89 1.53 -66.36 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699031927.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.459 kcal (2) G-P(sol) polarization free energy of solvation -67.890 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.431 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.533 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.358 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.899 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds