Wall clock time and date at job start Tue Mar 31 2020 15:43:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86803 * 119.99637 * 2 1 4 4 H 1.48500 * 109.46986 * 90.00480 * 3 2 1 5 5 H 1.48496 * 109.47029 * 210.00497 * 3 2 1 6 6 H 1.48499 * 109.47352 * 330.00327 * 3 2 1 7 7 C 1.38811 * 120.00134 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99665 * 179.97438 * 7 2 1 9 9 N 1.36934 * 119.99798 * 359.97438 * 7 2 1 10 10 C 1.46504 * 119.99567 * 179.97438 * 9 7 2 11 11 C 1.53004 * 109.46932 * 179.97438 * 10 9 7 12 12 H 1.09008 * 110.01604 * 53.61530 * 11 10 9 13 13 C 1.54259 * 110.03578 * 292.17092 * 11 10 9 14 14 C 1.54888 * 104.19544 * 217.10740 * 13 11 10 15 15 C 1.54888 * 102.74928 * 37.94077 * 14 13 11 16 16 C 1.53874 * 110.03179 * 175.00163 * 11 10 9 17 17 H 1.09005 * 110.03346 * 238.57542 * 16 11 10 18 18 N 1.46505 * 110.03223 * 359.97438 * 16 11 10 19 19 C 1.34771 * 120.00284 * 204.99689 * 18 16 11 20 20 O 1.21644 * 119.99851 * 0.02562 * 19 18 16 21 21 C 1.47183 * 120.00271 * 180.02562 * 19 18 16 22 22 C 1.35964 * 123.45315 * 359.70957 * 21 19 18 23 23 S 1.70443 * 110.84463 * 179.85948 * 22 21 19 24 24 C 1.75510 * 92.45616 * 0.34648 * 23 22 21 25 25 Cl 1.73596 * 124.72322 * 179.77290 * 24 23 22 26 26 C 1.32892 * 110.55968 * 359.80033 * 24 23 22 27 27 H 0.97005 * 119.99717 * 180.02562 * 1 2 3 28 28 H 0.97000 * 120.00607 * 0.02562 * 9 7 2 29 29 H 1.08998 * 109.47306 * 300.00481 * 10 9 7 30 30 H 1.08997 * 109.46860 * 60.00305 * 10 9 7 31 31 H 1.09003 * 110.48546 * 335.78245 * 13 11 10 32 32 H 1.08999 * 110.48909 * 98.42560 * 13 11 10 33 33 H 1.08998 * 110.75677 * 279.62374 * 14 13 11 34 34 H 1.09001 * 110.75711 * 156.25553 * 14 13 11 35 35 H 1.09002 * 110.48146 * 203.37818 * 15 14 13 36 36 H 1.08999 * 110.59917 * 80.79403 * 15 14 13 37 37 H 0.96998 * 119.99873 * 25.00760 * 18 16 11 38 38 H 1.08002 * 124.58262 * 359.97438 * 22 21 19 39 39 H 1.07994 * 123.47556 * 180.02562 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4977 2.0464 1.4001 5 1 3.5476 1.4404 -0.7001 6 1 1.4476 2.6528 -0.7000 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2020 -0.0010 9 7 1.3256 -2.3880 -0.0005 10 6 2.0582 -3.6567 -0.0017 11 6 1.0640 -4.8197 -0.0008 12 1 0.3588 -4.7083 -0.8245 13 6 0.3065 -4.8663 1.3422 14 6 0.1442 -6.3787 1.6344 15 6 1.4893 -6.9682 1.1423 16 6 1.8160 -6.1561 -0.1279 17 1 1.4752 -6.6937 -1.0128 18 7 3.2585 -5.9142 -0.2123 19 6 4.0591 -6.8166 -0.8132 20 8 3.5840 -7.8317 -1.2859 21 6 5.5084 -6.5739 -0.8975 22 6 6.1124 -5.4625 -0.3989 23 16 7.7946 -5.5139 -0.6683 24 6 7.6929 -7.0651 -1.4831 25 17 9.0479 -7.9254 -2.1444 26 6 6.4341 -7.4892 -1.5238 27 1 -0.4850 -0.8401 0.0004 28 1 0.3556 -2.3881 -0.0005 29 1 2.6843 -3.7140 -0.8921 30 1 2.6855 -3.7148 0.8878 31 1 0.8915 -4.3868 2.1270 32 1 -0.6690 -4.3894 1.2467 33 1 -0.6897 -6.7942 1.0686 34 1 0.0133 -6.5540 2.7022 35 1 1.3769 -8.0252 0.9010 36 1 2.2665 -6.8300 1.8939 37 1 3.6373 -5.1047 0.1645 38 1 5.5963 -4.6567 0.1020 39 1 6.1342 -8.4220 -1.9780 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001699031928.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:43:06 Heat of formation + Delta-G solvation = -3.703740 kcal Electronic energy + Delta-G solvation = -23063.359128 eV Core-core repulsion = 19544.425156 eV Total energy + Delta-G solvation = -3518.933972 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 328.075 amu Computer time = 1.95 seconds Orbital eigenvalues (eV) -40.35420 -38.49097 -37.42813 -36.49325 -34.72486 -33.75038 -31.51559 -30.09394 -28.44052 -27.54646 -25.13263 -24.33095 -22.74784 -21.98013 -20.62144 -19.62431 -19.27678 -18.51067 -17.50241 -17.16405 -16.04428 -15.52373 -15.12556 -14.96978 -14.59229 -14.29597 -13.96531 -13.89455 -13.75096 -13.60014 -13.37146 -13.13026 -12.89963 -12.32235 -11.95664 -11.90503 -11.71799 -11.31682 -11.09242 -10.93506 -10.82274 -10.63998 -10.60396 -10.48757 -10.34954 -10.06572 -9.98234 -9.24148 -9.22613 -9.09677 -8.93586 -8.75672 -7.08036 -6.16880 -3.17286 0.33200 0.69767 1.41352 1.57788 1.82161 3.16603 3.22435 3.46720 3.51470 3.65492 4.47880 4.53651 4.65744 4.71942 4.82246 4.93459 5.00048 5.29429 5.33917 5.46276 5.48214 5.53913 5.57337 5.64618 5.74815 5.77835 5.80011 5.94245 6.00043 6.05700 6.18603 6.30229 6.43281 6.48533 6.58308 6.66861 7.47307 7.71850 8.15923 8.69489 9.15756 10.02108 10.16994 11.31680 Molecular weight = 328.08amu Principal moments of inertia in cm(-1) A = 0.010739 B = 0.003414 C = 0.002674 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2606.619152 B = 8199.572337 C =10469.038111 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.942 5.942 2 C -0.043 4.043 3 Si 1.082 2.918 4 H -0.295 1.295 5 H -0.295 1.295 6 H -0.287 1.287 7 C -0.335 4.335 8 H 0.064 0.936 9 N -0.739 5.739 10 C 0.163 3.837 11 C -0.110 4.110 12 H 0.082 0.918 13 C -0.112 4.112 14 C -0.124 4.124 15 C -0.132 4.132 16 C 0.150 3.850 17 H 0.092 0.908 18 N -0.713 5.713 19 C 0.577 3.423 20 O -0.540 6.540 21 C -0.146 4.146 22 C -0.204 4.204 23 S 0.244 5.756 24 C -0.177 4.177 25 Cl -0.012 7.012 26 C -0.066 4.066 27 H 0.256 0.744 28 H 0.368 0.632 29 H 0.022 0.978 30 H 0.017 0.983 31 H 0.071 0.929 32 H 0.068 0.932 33 H 0.067 0.933 34 H 0.066 0.934 35 H 0.068 0.932 36 H 0.068 0.932 37 H 0.405 0.595 38 H 0.180 0.820 39 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.641 -15.847 0.844 20.926 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.587 5.587 2 C -0.241 4.241 3 Si 0.913 3.087 4 H -0.223 1.223 5 H -0.222 1.222 6 H -0.213 1.213 7 C -0.466 4.466 8 H 0.082 0.918 9 N -0.385 5.385 10 C 0.035 3.965 11 C -0.129 4.129 12 H 0.100 0.900 13 C -0.150 4.150 14 C -0.162 4.162 15 C -0.170 4.170 16 C 0.045 3.955 17 H 0.110 0.890 18 N -0.367 5.367 19 C 0.362 3.638 20 O -0.418 6.418 21 C -0.163 4.163 22 C -0.343 4.343 23 S 0.509 5.491 24 C -0.320 4.320 25 Cl 0.016 6.984 26 C -0.097 4.097 27 H 0.067 0.933 28 H 0.201 0.799 29 H 0.039 0.961 30 H 0.034 0.966 31 H 0.090 0.910 32 H 0.087 0.913 33 H 0.086 0.914 34 H 0.085 0.915 35 H 0.087 0.913 36 H 0.087 0.913 37 H 0.244 0.756 38 H 0.198 0.802 39 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges 14.708 -13.997 0.777 20.319 hybrid contribution -0.993 -2.231 -0.229 2.453 sum 13.716 -16.229 0.548 21.255 Atomic orbital electron populations 1.70855 1.06059 1.28498 1.53315 1.25774 0.97049 1.01005 1.00279 0.83209 0.73904 0.75364 0.76257 1.22272 1.22151 1.21319 1.20019 0.91944 0.85806 1.48832 0.91832 1.42323 1.04910 1.00659 1.90580 1.20618 0.93336 0.85263 0.97291 1.22250 0.98032 0.93609 0.99033 0.89968 1.22365 1.00616 0.95394 0.96621 1.22483 0.96859 0.96053 1.00784 1.22765 0.97808 0.99490 0.96967 1.21674 0.78738 0.96008 0.99061 0.89017 1.46237 1.08114 1.23657 1.58654 1.17487 0.84935 0.83336 0.78007 1.90781 1.76048 1.27210 1.47770 1.20060 0.94856 0.95669 1.05766 1.25906 1.00535 1.02554 1.05283 1.83244 1.01490 1.13157 1.51254 1.25111 0.93242 1.01682 1.11968 1.98375 1.41378 1.74799 1.83838 1.21127 0.89281 1.00758 0.98581 0.93308 0.79859 0.96058 0.96592 0.91011 0.91343 0.91443 0.91507 0.91299 0.91279 0.75596 0.80239 0.82000 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 39. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -28.57 13.70 55.49 0.76 -27.81 16 2 C -0.04 -1.23 5.50 -17.43 -0.10 -1.32 16 3 Si 1.08 25.32 29.92 -169.99 -5.09 20.23 16 4 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 5 H -0.29 -6.48 7.11 56.52 0.40 -6.08 16 6 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 7 C -0.34 -9.12 9.99 -15.06 -0.15 -9.28 16 8 H 0.06 1.69 7.83 -52.49 -0.41 1.27 16 9 N -0.74 -17.75 5.45 -59.91 -0.33 -18.08 16 10 C 0.16 3.03 4.19 -4.04 -0.02 3.01 16 11 C -0.11 -1.68 2.96 -89.50 -0.26 -1.95 16 12 H 0.08 1.32 8.14 -51.92 -0.42 0.90 16 13 C -0.11 -1.61 6.08 -25.08 -0.15 -1.76 16 14 C -0.12 -1.45 6.91 -24.74 -0.17 -1.62 16 15 C -0.13 -1.61 6.53 -25.08 -0.16 -1.77 16 16 C 0.15 2.07 3.22 -66.81 -0.22 1.85 16 17 H 0.09 1.35 7.56 -51.93 -0.39 0.95 16 18 N -0.71 -9.56 4.36 -53.87 -0.23 -9.79 16 19 C 0.58 8.24 7.79 -12.63 -0.10 8.14 16 20 O -0.54 -9.21 16.45 5.24 0.09 -9.13 16 21 C -0.15 -1.75 5.98 -104.63 -0.63 -2.38 16 22 C -0.20 -2.05 10.38 29.92 0.31 -1.74 16 23 S 0.24 2.11 23.02 -107.50 -2.47 -0.36 16 24 C -0.18 -1.76 7.01 28.89 0.20 -1.56 16 25 Cl -0.01 -0.11 29.27 -51.86 -1.52 -1.63 16 26 C -0.07 -0.75 10.04 -38.97 -0.39 -1.14 16 27 H 0.26 7.61 6.77 -40.82 -0.28 7.34 16 28 H 0.37 9.12 6.38 -40.82 -0.26 8.86 16 29 H 0.02 0.41 7.42 -51.93 -0.39 0.03 16 30 H 0.02 0.30 7.10 -51.93 -0.37 -0.07 16 31 H 0.07 1.11 7.76 -51.93 -0.40 0.71 16 32 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 33 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 34 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 35 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 36 H 0.07 0.84 8.05 -51.93 -0.42 0.42 16 37 H 0.41 5.11 4.39 -40.82 -0.18 4.93 16 38 H 0.18 1.58 7.01 -52.49 -0.37 1.21 16 39 H 0.16 1.78 8.06 -52.49 -0.42 1.36 16 LS Contribution 349.11 15.07 5.26 5.26 Total: -1.00 -31.94 349.11 -10.16 -42.10 By element: Atomic # 1 Polarization: 15.50 SS G_CDS: -4.80 Total: 10.71 kcal Atomic # 6 Polarization: -9.67 SS G_CDS: -1.83 Total: -11.51 kcal Atomic # 7 Polarization: -55.88 SS G_CDS: 0.20 Total: -55.68 kcal Atomic # 8 Polarization: -9.21 SS G_CDS: 0.09 Total: -9.13 kcal Atomic # 14 Polarization: 25.32 SS G_CDS: -5.09 Total: 20.23 kcal Atomic # 16 Polarization: 2.11 SS G_CDS: -2.47 Total: -0.36 kcal Atomic # 17 Polarization: -0.11 SS G_CDS: -1.52 Total: -1.63 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -31.94 -10.16 -42.10 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699031928.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.399 kcal (2) G-P(sol) polarization free energy of solvation -31.942 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.457 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.161 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.102 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.704 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.95 seconds