Wall clock time and date at job start Tue Mar 31 2020 15:43:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86803 * 119.99637 * 2 1 4 4 H 1.48500 * 109.46986 * 90.00480 * 3 2 1 5 5 H 1.48496 * 109.47029 * 210.00497 * 3 2 1 6 6 H 1.48499 * 109.47352 * 330.00327 * 3 2 1 7 7 C 1.38811 * 120.00134 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99665 * 179.97438 * 7 2 1 9 9 N 1.36934 * 119.99798 * 359.97438 * 7 2 1 10 10 C 1.46504 * 119.99567 * 179.97438 * 9 7 2 11 11 C 1.53004 * 109.46932 * 179.97438 * 10 9 7 12 12 H 1.09008 * 110.01604 * 53.61530 * 11 10 9 13 13 C 1.54259 * 110.03578 * 292.17092 * 11 10 9 14 14 C 1.54888 * 104.19544 * 217.10740 * 13 11 10 15 15 C 1.54888 * 102.74928 * 37.94077 * 14 13 11 16 16 C 1.53874 * 110.03179 * 175.00163 * 11 10 9 17 17 H 1.09005 * 110.03346 * 238.57542 * 16 11 10 18 18 N 1.46505 * 110.03223 * 359.97438 * 16 11 10 19 19 C 1.34771 * 120.00284 * 204.99689 * 18 16 11 20 20 O 1.21644 * 119.99851 * 0.02562 * 19 18 16 21 21 C 1.47183 * 120.00271 * 180.02562 * 19 18 16 22 22 C 1.35964 * 123.45315 * 359.70957 * 21 19 18 23 23 S 1.70443 * 110.84463 * 179.85948 * 22 21 19 24 24 C 1.75510 * 92.45616 * 0.34648 * 23 22 21 25 25 Cl 1.73596 * 124.72322 * 179.77290 * 24 23 22 26 26 C 1.32892 * 110.55968 * 359.80033 * 24 23 22 27 27 H 0.97005 * 119.99717 * 180.02562 * 1 2 3 28 28 H 0.97000 * 120.00607 * 0.02562 * 9 7 2 29 29 H 1.08998 * 109.47306 * 300.00481 * 10 9 7 30 30 H 1.08997 * 109.46860 * 60.00305 * 10 9 7 31 31 H 1.09003 * 110.48546 * 335.78245 * 13 11 10 32 32 H 1.08999 * 110.48909 * 98.42560 * 13 11 10 33 33 H 1.08998 * 110.75677 * 279.62374 * 14 13 11 34 34 H 1.09001 * 110.75711 * 156.25553 * 14 13 11 35 35 H 1.09002 * 110.48146 * 203.37818 * 15 14 13 36 36 H 1.08999 * 110.59917 * 80.79403 * 15 14 13 37 37 H 0.96998 * 119.99873 * 25.00760 * 18 16 11 38 38 H 1.08002 * 124.58262 * 359.97438 * 22 21 19 39 39 H 1.07994 * 123.47556 * 180.02562 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4977 2.0464 1.4001 5 1 3.5476 1.4404 -0.7001 6 1 1.4476 2.6528 -0.7000 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2020 -0.0010 9 7 1.3256 -2.3880 -0.0005 10 6 2.0582 -3.6567 -0.0017 11 6 1.0640 -4.8197 -0.0008 12 1 0.3588 -4.7083 -0.8245 13 6 0.3065 -4.8663 1.3422 14 6 0.1442 -6.3787 1.6344 15 6 1.4893 -6.9682 1.1423 16 6 1.8160 -6.1561 -0.1279 17 1 1.4752 -6.6937 -1.0128 18 7 3.2585 -5.9142 -0.2123 19 6 4.0591 -6.8166 -0.8132 20 8 3.5840 -7.8317 -1.2859 21 6 5.5084 -6.5739 -0.8975 22 6 6.1124 -5.4625 -0.3989 23 16 7.7946 -5.5139 -0.6683 24 6 7.6929 -7.0651 -1.4831 25 17 9.0479 -7.9254 -2.1444 26 6 6.4341 -7.4892 -1.5238 27 1 -0.4850 -0.8401 0.0004 28 1 0.3556 -2.3881 -0.0005 29 1 2.6843 -3.7140 -0.8921 30 1 2.6855 -3.7148 0.8878 31 1 0.8915 -4.3868 2.1270 32 1 -0.6690 -4.3894 1.2467 33 1 -0.6897 -6.7942 1.0686 34 1 0.0133 -6.5540 2.7022 35 1 1.3769 -8.0252 0.9010 36 1 2.2665 -6.8300 1.8939 37 1 3.6373 -5.1047 0.1645 38 1 5.5963 -4.6567 0.1020 39 1 6.1342 -8.4220 -1.9780 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001699031928.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:43:05 Heat of formation + Delta-G solvation = -22.706242 kcal Electronic energy + Delta-G solvation = -23064.183138 eV Core-core repulsion = 19544.425156 eV Total energy + Delta-G solvation = -3519.757983 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 328.075 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.46845 -39.59634 -38.30779 -37.35887 -36.55681 -34.86336 -33.31007 -30.97481 -30.00102 -28.60638 -26.21942 -25.91052 -24.48929 -22.94958 -21.68133 -20.62151 -20.51512 -19.61099 -19.09893 -18.31436 -17.29759 -16.67602 -16.32588 -16.11347 -15.97457 -15.68701 -15.37854 -15.09219 -14.87062 -14.67915 -14.66672 -14.40729 -13.80652 -13.58580 -13.02127 -12.84430 -12.70071 -12.63975 -12.61507 -12.31285 -11.99625 -11.88997 -11.84723 -11.82412 -11.76739 -11.57682 -11.20368 -11.10350 -10.92523 -10.20481 -9.99844 -9.55329 -9.10486 -8.37986 -5.32512 -0.49466 -0.05613 0.62081 0.66774 1.05176 1.59936 1.70352 1.83827 2.10648 2.18798 2.72087 3.34402 3.41776 3.60174 3.73753 3.75977 3.83415 4.01694 4.09769 4.29788 4.39143 4.41911 4.44469 4.50079 4.56043 4.64851 4.68977 4.82802 4.90271 4.92094 5.01642 5.15685 5.17107 5.26221 5.41207 5.45618 5.59848 6.39148 6.51072 7.06877 7.10238 8.00261 8.11720 9.14158 Molecular weight = 328.08amu Principal moments of inertia in cm(-1) A = 0.010739 B = 0.003414 C = 0.002674 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2606.619152 B = 8199.572337 C =10469.038111 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.977 5.977 2 C -0.104 4.104 3 Si 1.128 2.872 4 H -0.284 1.284 5 H -0.271 1.271 6 H -0.297 1.297 7 C -0.333 4.333 8 H 0.071 0.929 9 N -0.752 5.752 10 C 0.164 3.836 11 C -0.102 4.102 12 H 0.071 0.929 13 C -0.110 4.110 14 C -0.112 4.112 15 C -0.124 4.124 16 C 0.154 3.846 17 H 0.082 0.918 18 N -0.710 5.710 19 C 0.577 3.423 20 O -0.574 6.574 21 C -0.169 4.169 22 C -0.202 4.202 23 S 0.305 5.695 24 C -0.184 4.184 25 Cl -0.004 7.004 26 C -0.079 4.079 27 H 0.245 0.755 28 H 0.361 0.639 29 H 0.020 0.980 30 H 0.029 0.971 31 H 0.060 0.940 32 H 0.059 0.941 33 H 0.077 0.923 34 H 0.083 0.917 35 H 0.073 0.927 36 H 0.073 0.927 37 H 0.409 0.591 38 H 0.193 0.807 39 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.575 -15.910 1.581 22.321 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.625 5.625 2 C -0.295 4.295 3 Si 0.953 3.047 4 H -0.211 1.211 5 H -0.196 1.196 6 H -0.224 1.224 7 C -0.464 4.464 8 H 0.089 0.911 9 N -0.397 5.397 10 C 0.038 3.962 11 C -0.121 4.121 12 H 0.090 0.910 13 C -0.148 4.148 14 C -0.150 4.150 15 C -0.163 4.163 16 C 0.049 3.951 17 H 0.100 0.900 18 N -0.363 5.363 19 C 0.364 3.636 20 O -0.456 6.456 21 C -0.187 4.187 22 C -0.341 4.341 23 S 0.570 5.430 24 C -0.327 4.327 25 Cl 0.024 6.976 26 C -0.110 4.110 27 H 0.055 0.945 28 H 0.193 0.807 29 H 0.038 0.962 30 H 0.047 0.953 31 H 0.079 0.921 32 H 0.077 0.923 33 H 0.096 0.904 34 H 0.102 0.898 35 H 0.092 0.908 36 H 0.092 0.908 37 H 0.249 0.751 38 H 0.210 0.790 39 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges 16.684 -14.098 1.524 21.896 hybrid contribution -1.493 -2.247 -0.473 2.739 sum 15.191 -16.345 1.051 22.339 Atomic orbital electron populations 1.70965 1.07286 1.27963 1.56286 1.27160 0.97097 1.04668 1.00622 0.82618 0.73633 0.71596 0.76855 1.21072 1.19607 1.22367 1.20416 0.92513 0.86925 1.46543 0.91092 1.42538 1.04836 1.01763 1.90548 1.20755 0.93795 0.84260 0.97408 1.22140 0.97383 0.93164 0.99443 0.91006 1.22306 0.99664 0.97375 0.95460 1.22440 0.96889 0.93614 1.02055 1.22712 0.98179 0.99392 0.96019 1.21599 0.78854 0.94986 0.99673 0.89997 1.46183 1.07889 1.23713 1.58475 1.17798 0.85894 0.82744 0.77180 1.90755 1.76871 1.28607 1.49340 1.19878 0.93707 0.97090 1.08065 1.26151 1.01872 1.01991 1.04124 1.83086 0.99425 1.11232 1.49269 1.25258 0.93152 1.02515 1.11796 1.98379 1.40669 1.74805 1.83735 1.21090 0.89788 1.00838 0.99293 0.94499 0.80721 0.96249 0.95282 0.92132 0.92255 0.90429 0.89790 0.90833 0.90836 0.75132 0.79035 0.82620 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.98 -60.05 13.70 21.65 0.30 -59.76 16 2 C -0.10 -5.88 5.50 84.86 0.47 -5.42 16 3 Si 1.13 50.34 29.92 68.60 2.05 52.39 16 4 H -0.28 -12.05 7.11 99.48 0.71 -11.35 16 5 H -0.27 -10.89 7.11 99.48 0.71 -10.18 16 6 H -0.30 -13.64 7.11 99.48 0.71 -12.94 16 7 C -0.33 -17.91 9.99 84.03 0.84 -17.07 16 8 H 0.07 3.65 7.83 -2.91 -0.02 3.62 16 9 N -0.75 -36.17 5.45 -343.44 -1.87 -38.04 16 10 C 0.16 6.01 4.19 86.38 0.36 6.37 16 11 C -0.10 -3.09 2.96 -10.07 -0.03 -3.12 16 12 H 0.07 2.33 8.14 -2.38 -0.02 2.31 16 13 C -0.11 -3.08 6.08 31.67 0.19 -2.89 16 14 C -0.11 -2.42 6.91 31.88 0.22 -2.20 16 15 C -0.12 -2.84 6.53 31.67 0.21 -2.64 16 16 C 0.15 4.14 3.22 45.71 0.15 4.29 16 17 H 0.08 2.40 7.56 -2.38 -0.02 2.38 16 18 N -0.71 -18.47 4.36 -442.58 -1.93 -20.40 16 19 C 0.58 16.30 7.79 86.59 0.67 16.97 16 20 O -0.57 -19.81 16.45 -4.17 -0.07 -19.88 16 21 C -0.17 -3.94 5.98 -19.87 -0.12 -4.05 16 22 C -0.20 -3.67 10.38 67.29 0.70 -2.98 16 23 S 0.30 4.50 23.02 -56.49 -1.30 3.20 16 24 C -0.18 -3.38 7.01 66.64 0.47 -2.91 16 25 Cl 0.00 -0.07 29.27 -2.72 -0.08 -0.15 16 26 C -0.08 -1.73 10.04 22.68 0.23 -1.51 16 27 H 0.24 14.96 6.77 -92.70 -0.63 14.34 16 28 H 0.36 18.24 6.38 -92.71 -0.59 17.65 16 29 H 0.02 0.73 7.42 -2.39 -0.02 0.72 16 30 H 0.03 1.02 7.10 -2.39 -0.02 1.00 16 31 H 0.06 1.83 7.76 -2.39 -0.02 1.81 16 32 H 0.06 1.76 8.14 -2.39 -0.02 1.74 16 33 H 0.08 1.54 8.14 -2.39 -0.02 1.52 16 34 H 0.08 1.57 8.14 -2.39 -0.02 1.55 16 35 H 0.07 1.66 8.14 -2.39 -0.02 1.64 16 36 H 0.07 1.63 8.05 -2.39 -0.02 1.61 16 37 H 0.41 9.80 4.39 -92.71 -0.41 9.39 16 38 H 0.19 2.91 7.01 -2.91 -0.02 2.89 16 39 H 0.16 3.49 8.06 -2.91 -0.02 3.46 16 Total: -1.00 -68.31 349.11 1.69 -66.61 By element: Atomic # 1 Polarization: 32.94 SS G_CDS: 0.24 Total: 33.18 kcal Atomic # 6 Polarization: -21.51 SS G_CDS: 4.35 Total: -17.15 kcal Atomic # 7 Polarization: -114.69 SS G_CDS: -3.50 Total: -118.20 kcal Atomic # 8 Polarization: -19.81 SS G_CDS: -0.07 Total: -19.88 kcal Atomic # 14 Polarization: 50.34 SS G_CDS: 2.05 Total: 52.39 kcal Atomic # 16 Polarization: 4.50 SS G_CDS: -1.30 Total: 3.20 kcal Atomic # 17 Polarization: -0.07 SS G_CDS: -0.08 Total: -0.15 kcal Total: -68.31 1.69 -66.61 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699031928.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.906 kcal (2) G-P(sol) polarization free energy of solvation -68.306 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.401 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.694 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.612 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.706 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds