Wall clock time and date at job start Tue Mar 31 2020 15:45:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86794 * 120.00506 * 2 1 4 4 H 1.48499 * 109.47312 * 240.00276 * 3 2 1 5 5 H 1.48506 * 109.46866 * 359.97438 * 3 2 1 6 6 H 1.48499 * 109.47236 * 120.00039 * 3 2 1 7 7 C 1.38815 * 119.99225 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99738 * 179.97438 * 7 2 1 9 9 N 1.36930 * 120.00439 * 0.02562 * 7 2 1 10 10 C 1.46506 * 120.00258 * 179.97438 * 9 7 2 11 11 C 1.52997 * 109.47289 * 180.02562 * 10 9 7 12 12 H 1.09001 * 110.43347 * 305.69933 * 11 10 9 13 13 C 1.54889 * 110.48745 * 68.24107 * 11 10 9 14 14 C 1.55030 * 102.68031 * 156.51882 * 13 11 10 15 15 C 1.54263 * 104.28052 * 322.23005 * 14 13 11 16 16 C 1.53875 * 106.59838 * 23.52488 * 15 14 13 17 17 H 1.09004 * 110.06835 * 240.68908 * 16 15 14 18 18 N 1.46500 * 110.03317 * 119.28395 * 16 15 14 19 19 C 1.34773 * 120.00187 * 87.83042 * 18 16 15 20 20 O 1.21707 * 120.00041 * 0.02562 * 19 18 16 21 21 C 1.46575 * 119.99842 * 179.97438 * 19 18 16 22 22 C 1.36678 * 125.44974 * 179.97438 * 21 19 18 23 23 C 1.37530 * 113.28363 * 179.97438 * 22 21 19 24 24 Cl 1.73604 * 122.45521 * 179.97438 * 23 22 21 25 25 C 1.33867 * 115.08191 * 0.02562 * 23 22 21 26 26 S 1.70624 * 110.96012 * 359.76227 * 25 23 22 27 27 H 0.97000 * 119.99950 * 359.97438 * 1 2 3 28 28 H 0.97001 * 120.00490 * 359.97438 * 9 7 2 29 29 H 1.09001 * 109.47060 * 300.00287 * 10 9 7 30 30 H 1.09004 * 109.47073 * 59.99776 * 10 9 7 31 31 H 1.08997 * 110.75281 * 274.93380 * 13 11 10 32 32 H 1.08999 * 110.75349 * 38.30765 * 13 11 10 33 33 H 1.09003 * 110.51793 * 203.48871 * 14 13 11 34 34 H 1.09000 * 110.47960 * 80.95830 * 14 13 11 35 35 H 1.08998 * 110.03317 * 264.23501 * 15 14 13 36 36 H 1.09008 * 110.06928 * 142.82870 * 15 14 13 37 37 H 0.97001 * 119.99768 * 267.83350 * 18 16 15 38 38 H 1.07999 * 123.35645 * 359.97011 * 22 21 19 39 39 H 1.08000 * 124.52265 * 179.97438 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 3.1040 1.6963 -1.2125 5 1 1.2853 2.7464 -0.0006 6 1 3.1041 1.6962 1.2125 7 6 2.0101 -1.2023 0.0005 8 1 3.0901 -1.2024 0.0001 9 7 1.3254 -2.3881 0.0005 10 6 2.0578 -3.6569 0.0005 11 6 1.0635 -4.8198 -0.0001 12 1 0.3628 -4.7218 0.8291 13 6 0.3029 -4.8819 -1.3480 14 6 -0.1467 -6.3640 -1.4170 15 6 1.0398 -7.1497 -0.8214 16 6 1.8092 -6.1678 0.0796 17 1 2.8311 -6.0511 -0.2814 18 7 1.8179 -6.6557 1.4609 19 6 2.7875 -7.4965 1.8726 20 8 3.6562 -7.8500 1.0968 21 6 2.7965 -7.9841 3.2548 22 6 3.7221 -8.8364 3.7887 23 6 3.4910 -9.1301 5.1122 24 17 4.5199 -10.1893 6.0249 25 6 2.4138 -8.5400 5.6447 26 16 1.6219 -7.5615 4.4929 27 1 -0.4850 0.8401 0.0004 28 1 0.3554 -2.3881 0.0005 29 1 2.6845 -3.7147 -0.8894 30 1 2.6845 -3.7147 0.8905 31 1 -0.5590 -4.2148 -1.3362 32 1 0.9674 -4.6418 -2.1779 33 1 -0.3214 -6.6625 -2.4507 34 1 -1.0450 -6.5183 -0.8193 35 1 1.6880 -7.5097 -1.6204 36 1 0.6736 -7.9896 -0.2310 37 1 1.1258 -6.3737 2.0793 38 1 4.5521 -9.2391 3.2272 39 1 2.0911 -8.6639 6.6679 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001699032730.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:45:36 Heat of formation + Delta-G solvation = -30.485767 kcal Electronic energy + Delta-G solvation = -22648.345067 eV Core-core repulsion = 19128.249739 eV Total energy + Delta-G solvation = -3520.095328 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 328.075 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.24712 -39.57175 -38.74941 -37.01150 -36.31966 -34.82256 -33.29463 -31.17931 -30.20334 -28.71477 -26.51383 -25.87613 -23.95537 -22.78077 -21.59314 -21.06859 -20.42099 -19.67901 -19.02270 -17.76750 -17.21694 -16.77101 -16.57934 -16.34076 -15.83252 -15.46429 -15.19266 -15.06502 -14.71769 -14.64560 -14.43140 -14.26068 -13.88796 -13.47005 -13.17041 -12.90875 -12.77158 -12.51674 -12.44936 -12.39393 -12.20236 -11.96197 -11.91406 -11.87029 -11.63906 -11.59216 -11.42077 -11.25511 -10.91995 -10.29754 -10.00334 -9.52980 -8.99391 -7.95025 -5.23165 -0.72303 0.16961 0.44450 1.01952 1.44381 1.47607 1.49887 1.56125 1.98437 2.04412 2.55964 3.37714 3.41986 3.62929 3.67254 3.89668 3.91592 4.09471 4.16273 4.40456 4.46601 4.47952 4.55364 4.58926 4.64689 4.73149 4.81365 4.88848 4.99010 5.00739 5.07532 5.17360 5.25121 5.34241 5.47297 5.50604 5.54619 6.27370 6.34377 7.00894 7.34689 8.09077 8.35078 9.27922 Molecular weight = 328.08amu Principal moments of inertia in cm(-1) A = 0.013817 B = 0.002734 C = 0.002450 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2026.032852 B =10239.544913 C =11427.521744 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.965 5.965 2 C -0.070 4.070 3 Si 0.970 3.030 4 H -0.280 1.280 5 H -0.292 1.292 6 H -0.279 1.279 7 C -0.249 4.249 8 H 0.069 0.931 9 N -0.738 5.738 10 C 0.161 3.839 11 C -0.092 4.092 12 H 0.086 0.914 13 C -0.110 4.110 14 C -0.111 4.111 15 C -0.124 4.124 16 C 0.153 3.847 17 H 0.076 0.924 18 N -0.706 5.706 19 C 0.590 3.410 20 O -0.566 6.566 21 C -0.286 4.286 22 C -0.055 4.055 23 C -0.077 4.077 24 Cl -0.046 7.046 25 C -0.219 4.219 26 S 0.312 5.688 27 H 0.252 0.748 28 H 0.377 0.623 29 H 0.015 0.985 30 H 0.010 0.990 31 H 0.063 0.937 32 H 0.059 0.941 33 H 0.079 0.921 34 H 0.079 0.921 35 H 0.070 0.930 36 H 0.076 0.924 37 H 0.408 0.592 38 H 0.154 0.846 39 H 0.208 0.792 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.016 -22.272 10.555 24.646 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.615 5.615 2 C -0.262 4.262 3 Si 0.799 3.201 4 H -0.207 1.207 5 H -0.218 1.218 6 H -0.205 1.205 7 C -0.381 4.381 8 H 0.087 0.913 9 N -0.381 5.381 10 C 0.035 3.965 11 C -0.111 4.111 12 H 0.105 0.895 13 C -0.148 4.148 14 C -0.149 4.149 15 C -0.163 4.163 16 C 0.048 3.952 17 H 0.094 0.906 18 N -0.357 5.357 19 C 0.377 3.623 20 O -0.447 6.447 21 C -0.407 4.407 22 C -0.089 4.089 23 C -0.117 4.117 24 Cl -0.018 7.018 25 C -0.358 4.358 26 S 0.579 5.421 27 H 0.061 0.939 28 H 0.210 0.790 29 H 0.033 0.967 30 H 0.028 0.972 31 H 0.082 0.918 32 H 0.078 0.922 33 H 0.098 0.902 34 H 0.097 0.903 35 H 0.089 0.911 36 H 0.095 0.905 37 H 0.244 0.756 38 H 0.172 0.828 39 H 0.225 0.775 Dipole moment (debyes) X Y Z Total from point charges -0.465 -21.568 10.121 23.829 hybrid contribution 1.479 0.233 0.352 1.538 sum 1.013 -21.335 10.473 23.789 Atomic orbital electron populations 1.69784 1.06368 1.26184 1.59211 1.25489 0.96407 1.00802 1.03539 0.85268 0.77303 0.79436 0.78092 1.20660 1.21847 1.20522 1.19541 0.91309 0.85567 1.41657 0.91321 1.42441 1.05641 1.00704 1.89321 1.20775 0.93645 0.85091 0.97008 1.22288 0.96924 0.92007 0.99865 0.89534 1.22424 0.99488 0.97343 0.95584 1.22345 0.97607 0.93093 1.01861 1.22488 0.97323 0.97667 0.98809 1.21602 1.00296 0.92586 0.80720 0.90627 1.45960 1.28889 1.47161 1.13647 1.17117 0.81187 0.78404 0.85592 1.90817 1.38705 1.59418 1.55787 1.24440 1.06221 1.10922 0.99140 1.20547 0.99192 0.95940 0.93268 1.19504 0.97129 1.02335 0.92757 1.98375 1.66544 1.63860 1.72974 1.25685 0.99565 1.02752 1.07815 1.83099 1.23285 1.39823 0.95887 0.93888 0.79000 0.96746 0.97183 0.91834 0.92193 0.90215 0.90263 0.91086 0.90523 0.75563 0.82827 0.77521 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -57.95 13.06 21.65 0.28 -57.67 16 2 C -0.07 -3.98 5.50 84.86 0.47 -3.51 16 3 Si 0.97 46.00 29.55 68.60 2.03 48.02 16 4 H -0.28 -12.93 7.11 99.48 0.71 -12.22 16 5 H -0.29 -13.83 7.11 99.48 0.71 -13.13 16 6 H -0.28 -12.80 7.11 99.48 0.71 -12.09 16 7 C -0.25 -13.95 9.99 84.04 0.84 -13.11 16 8 H 0.07 3.77 7.83 -2.91 -0.02 3.74 16 9 N -0.74 -36.92 5.47 -343.44 -1.88 -38.80 16 10 C 0.16 6.47 5.54 86.38 0.48 6.95 16 11 C -0.09 -2.73 2.60 -9.72 -0.03 -2.76 16 12 H 0.09 2.48 7.74 -2.39 -0.02 2.46 16 13 C -0.11 -3.10 6.11 31.93 0.20 -2.91 16 14 C -0.11 -2.31 6.83 31.72 0.22 -2.09 16 15 C -0.12 -2.73 6.59 31.32 0.21 -2.53 16 16 C 0.15 4.04 2.82 45.71 0.13 4.17 16 17 H 0.08 2.36 7.26 -2.39 -0.02 2.35 16 18 N -0.71 -16.64 4.98 -443.16 -2.21 -18.84 16 19 C 0.59 15.69 7.78 86.42 0.67 16.36 16 20 O -0.57 -19.29 16.49 -4.37 -0.07 -19.36 16 21 C -0.29 -6.02 6.45 24.08 0.16 -5.87 16 22 C -0.06 -1.14 9.89 21.74 0.22 -0.93 16 23 C -0.08 -1.31 6.25 21.11 0.13 -1.18 16 24 Cl -0.05 -0.74 29.10 -2.72 -0.08 -0.82 16 25 C -0.22 -2.76 10.78 66.83 0.72 -2.04 16 26 S 0.31 4.16 22.15 -56.49 -1.25 2.90 16 27 H 0.25 14.70 8.31 -92.71 -0.77 13.93 16 28 H 0.38 19.63 7.58 -92.71 -0.70 18.93 16 29 H 0.01 0.61 8.06 -2.39 -0.02 0.59 16 30 H 0.01 0.43 8.14 -2.38 -0.02 0.41 16 31 H 0.06 1.95 8.14 -2.39 -0.02 1.93 16 32 H 0.06 1.82 8.00 -2.39 -0.02 1.80 16 33 H 0.08 1.46 8.14 -2.39 -0.02 1.44 16 34 H 0.08 1.44 8.14 -2.39 -0.02 1.42 16 35 H 0.07 1.59 8.14 -2.39 -0.02 1.57 16 36 H 0.08 1.55 7.92 -2.38 -0.02 1.53 16 37 H 0.41 7.73 7.47 -92.71 -0.69 7.04 16 38 H 0.15 3.33 8.06 -2.91 -0.02 3.30 16 39 H 0.21 1.41 8.06 -2.91 -0.02 1.39 16 Total: -1.00 -68.55 356.24 0.92 -67.63 By element: Atomic # 1 Polarization: 26.69 SS G_CDS: -0.30 Total: 26.39 kcal Atomic # 6 Polarization: -13.85 SS G_CDS: 4.40 Total: -9.45 kcal Atomic # 7 Polarization: -111.51 SS G_CDS: -3.80 Total: -115.31 kcal Atomic # 8 Polarization: -19.29 SS G_CDS: -0.07 Total: -19.36 kcal Atomic # 14 Polarization: 46.00 SS G_CDS: 2.03 Total: 48.02 kcal Atomic # 16 Polarization: 4.16 SS G_CDS: -1.25 Total: 2.90 kcal Atomic # 17 Polarization: -0.74 SS G_CDS: -0.08 Total: -0.82 kcal Total: -68.55 0.92 -67.63 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699032730.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.140 kcal (2) G-P(sol) polarization free energy of solvation -68.548 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.407 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.921 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.626 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.486 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds