Wall clock time and date at job start Tue Mar 31 2020 15:41:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86800 * 119.99776 * 2 1 4 4 H 1.48500 * 109.47045 * 180.02562 * 3 2 1 5 5 H 1.48492 * 109.47426 * 300.00180 * 3 2 1 6 6 H 1.48501 * 109.46833 * 60.00423 * 3 2 1 7 7 C 1.38811 * 119.99773 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99701 * 179.73016 * 7 2 1 9 9 N 1.36935 * 120.00369 * 359.97438 * 7 2 1 10 10 C 1.46499 * 119.99926 * 179.73019 * 9 7 2 11 11 C 1.50699 * 109.46700 * 180.02562 * 10 9 7 12 12 C 1.31006 * 120.00263 * 125.00023 * 11 10 9 13 13 C 1.50698 * 120.00161 * 179.97438 * 12 11 10 14 14 N 1.46505 * 109.46836 * 124.99857 * 13 12 11 15 15 C 1.34776 * 119.99942 * 180.02562 * 14 13 12 16 16 O 1.21288 * 119.99896 * 359.97438 * 15 14 13 17 17 C 1.50691 * 120.00055 * 180.02562 * 15 14 13 18 18 C 1.53001 * 109.47355 * 179.97438 * 17 15 14 19 19 C 1.50704 * 109.47255 * 179.97438 * 18 17 15 20 20 C 1.33402 * 125.19025 * 90.00408 * 19 18 17 21 21 C 1.38484 * 114.90921 * 179.97438 * 20 19 18 22 22 Cl 1.73599 * 122.55119 * 179.97438 * 21 20 19 23 23 C 1.33439 * 114.89951 * 0.02562 * 21 20 19 24 24 S 1.75881 * 125.19863 * 269.69688 * 19 18 17 25 25 H 0.97004 * 120.00382 * 359.97438 * 1 2 3 26 26 H 0.97005 * 119.99813 * 359.72895 * 9 7 2 27 27 H 1.08998 * 109.47134 * 299.99639 * 10 9 7 28 28 H 1.08994 * 109.47397 * 59.99931 * 10 9 7 29 29 H 1.08001 * 120.00027 * 304.99186 * 11 10 9 30 30 H 1.07994 * 119.99490 * 359.97438 * 12 11 10 31 31 H 1.08996 * 109.47371 * 245.00207 * 13 12 11 32 32 H 1.09006 * 109.46786 * 5.00360 * 13 12 11 33 33 H 0.97001 * 119.99738 * 359.97438 * 14 13 12 34 34 H 1.08996 * 109.47285 * 299.99949 * 17 15 14 35 35 H 1.09000 * 109.47384 * 59.99975 * 17 15 14 36 36 H 1.08996 * 109.47302 * 300.00453 * 18 17 15 37 37 H 1.09002 * 109.46981 * 59.99858 * 18 17 15 38 38 H 1.07999 * 122.55174 * 0.02562 * 20 19 18 39 39 H 1.07997 * 125.20002 * 179.97438 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.7101 1.3465 -0.0006 5 1 1.8914 2.3965 -1.2124 6 1 1.8914 2.3964 1.2126 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0049 9 7 1.3255 -2.3881 -0.0005 10 6 2.0581 -3.6568 -0.0071 11 6 1.0787 -4.8022 -0.0063 12 6 1.1438 -5.7203 -0.9385 13 6 0.1649 -6.8660 -0.9373 14 7 -0.5172 -6.9267 -2.2325 15 6 -1.4435 -7.8784 -2.4623 16 8 -1.7120 -8.6849 -1.5971 17 6 -2.1446 -7.9413 -3.7947 18 6 -3.1387 -9.1044 -3.7936 19 6 -3.8404 -9.1668 -5.1259 20 6 -3.4212 -9.8632 -6.1836 21 6 -4.2321 -9.7694 -7.3023 22 17 -3.8739 -10.5940 -8.7874 23 6 -5.3092 -8.9962 -7.1522 24 16 -5.3409 -8.3387 -5.5212 25 1 -0.4851 0.8400 0.0004 26 1 0.3555 -2.3881 0.0038 27 1 2.6807 -3.7122 -0.9000 28 1 2.6887 -3.7168 0.8799 29 1 0.3233 -4.8662 0.7629 30 1 1.8991 -5.6561 -1.7077 31 1 0.6990 -7.8002 -0.7638 32 1 -0.5700 -6.7152 -0.1464 33 1 -0.3027 -6.2815 -2.9243 34 1 -2.6783 -7.0070 -3.9689 35 1 -1.4097 -8.0927 -4.5853 36 1 -2.6047 -10.0385 -3.6196 37 1 -3.8737 -8.9534 -3.0030 38 1 -2.5185 -10.4559 -6.1686 39 1 -6.0506 -8.8066 -7.9143 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001699314071.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:41:06 Heat of formation + Delta-G solvation = 4.913608 kcal Electronic energy + Delta-G solvation = -20950.176984 eV Core-core repulsion = 17431.616688 eV Total energy + Delta-G solvation = -3518.560296 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 328.075 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -39.91840 -38.68737 -36.68185 -36.32790 -34.76964 -33.93443 -32.85242 -30.70506 -29.41184 -27.30589 -25.50864 -24.05805 -22.85661 -21.87640 -20.63952 -19.81079 -19.43050 -18.00042 -17.16563 -17.01761 -16.32671 -16.04545 -15.89842 -14.86450 -14.51460 -14.42670 -14.09661 -13.77165 -13.60925 -13.50989 -13.32606 -13.13972 -12.86192 -12.64156 -12.57223 -12.04719 -11.87519 -11.64593 -11.59860 -11.44986 -11.07568 -11.07100 -10.86832 -10.65969 -10.13618 -10.06248 -9.84246 -9.31812 -9.18502 -9.03360 -8.83215 -8.75356 -6.98614 -5.81698 -3.11350 0.38209 0.86426 1.27154 2.00871 2.16493 2.24357 2.50029 3.27912 3.40281 3.45957 3.48229 4.22093 4.51575 4.56164 4.60717 4.66695 4.81466 4.91338 5.01615 5.19118 5.20854 5.26030 5.50279 5.51567 5.57922 5.60562 5.66801 5.76139 5.80678 5.95879 6.09427 6.28312 6.43339 6.53392 6.85937 7.10405 7.39308 7.65377 8.08204 8.36580 9.48039 10.04079 10.39306 11.41051 Molecular weight = 328.08amu Principal moments of inertia in cm(-1) A = 0.015257 B = 0.001675 C = 0.001591 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1834.761554 B =16708.822734 C =17594.745211 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C -0.014 4.014 3 Si 0.909 3.091 4 H -0.280 1.280 5 H -0.291 1.291 6 H -0.291 1.291 7 C -0.242 4.242 8 H 0.072 0.928 9 N -0.730 5.730 10 C 0.172 3.828 11 C -0.106 4.106 12 C -0.203 4.203 13 C 0.155 3.845 14 N -0.723 5.723 15 C 0.512 3.488 16 O -0.546 6.546 17 C -0.138 4.138 18 C -0.034 4.034 19 C -0.162 4.162 20 C -0.136 4.136 21 C -0.042 4.042 22 Cl -0.054 7.054 23 C -0.217 4.217 24 S 0.152 5.848 25 H 0.255 0.745 26 H 0.385 0.615 27 H 0.026 0.974 28 H 0.031 0.969 29 H 0.109 0.891 30 H 0.115 0.885 31 H 0.071 0.929 32 H 0.070 0.930 33 H 0.404 0.596 34 H 0.098 0.902 35 H 0.099 0.901 36 H 0.095 0.905 37 H 0.087 0.913 38 H 0.150 0.850 39 H 0.174 0.826 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.603 -22.759 -15.087 28.945 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.210 4.210 3 Si 0.740 3.260 4 H -0.205 1.205 5 H -0.218 1.218 6 H -0.218 1.218 7 C -0.373 4.373 8 H 0.090 0.910 9 N -0.374 5.374 10 C 0.045 3.955 11 C -0.125 4.125 12 C -0.222 4.222 13 C 0.032 3.968 14 N -0.375 5.375 15 C 0.298 3.702 16 O -0.424 6.424 17 C -0.179 4.179 18 C -0.073 4.073 19 C -0.280 4.280 20 C -0.166 4.166 21 C -0.082 4.082 22 Cl -0.025 7.025 23 C -0.354 4.354 24 S 0.415 5.585 25 H 0.065 0.935 26 H 0.219 0.781 27 H 0.043 0.957 28 H 0.049 0.951 29 H 0.127 0.873 30 H 0.133 0.867 31 H 0.089 0.911 32 H 0.088 0.912 33 H 0.239 0.761 34 H 0.116 0.884 35 H 0.117 0.883 36 H 0.113 0.887 37 H 0.106 0.894 38 H 0.168 0.832 39 H 0.191 0.809 Dipole moment (debyes) X Y Z Total from point charges -10.607 -22.336 -13.805 28.319 hybrid contribution 1.191 0.353 -1.373 1.852 sum -9.416 -21.983 -15.178 28.325 Atomic orbital electron populations 1.69675 1.05148 1.25655 1.57590 1.24772 0.95572 0.97796 1.02855 0.86086 0.78770 0.83910 0.77231 1.20501 1.21807 1.21781 1.19294 0.91121 0.84002 1.42912 0.90996 1.42302 1.05944 0.99568 1.89588 1.19831 0.92625 0.84583 0.98467 1.23345 0.98199 0.93972 0.96986 1.22693 1.01046 0.97085 1.01403 1.20321 0.93808 0.97610 0.85053 1.46090 1.40903 1.33042 1.17419 1.20567 0.79481 0.80653 0.89469 1.90713 1.64409 1.40411 1.46835 1.21697 0.99419 1.00877 0.95869 1.19906 0.97251 0.99610 0.90574 1.24495 0.99872 1.03353 1.00251 1.19874 1.02240 1.03434 0.91058 1.19782 0.97448 1.01021 0.89929 1.98375 1.94628 1.77390 1.32152 1.25596 1.03069 1.04799 1.01911 1.84587 1.21290 1.48262 1.04356 0.93483 0.78146 0.95661 0.95106 0.87270 0.86750 0.91104 0.91208 0.76103 0.88368 0.88303 0.88709 0.89428 0.83201 0.80893 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.02 13.06 55.49 0.72 -27.30 16 2 C -0.01 -0.40 5.50 -17.43 -0.10 -0.49 16 3 Si 0.91 22.17 29.55 -169.99 -5.02 17.15 16 4 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 5 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 6 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 7 C -0.24 -6.74 9.99 -15.06 -0.15 -6.89 16 8 H 0.07 1.93 7.83 -52.48 -0.41 1.52 16 9 N -0.73 -18.36 5.59 -61.09 -0.34 -18.70 16 10 C 0.17 3.38 6.70 -5.19 -0.03 3.34 16 11 C -0.11 -1.66 9.24 -36.03 -0.33 -2.00 16 12 C -0.20 -2.64 9.24 -36.03 -0.33 -2.97 16 13 C 0.15 1.85 6.11 -5.19 -0.03 1.82 16 14 N -0.72 -7.62 5.55 -61.47 -0.34 -7.96 16 15 C 0.51 5.61 7.83 -10.99 -0.09 5.53 16 16 O -0.55 -7.96 15.98 5.55 0.09 -7.87 16 17 C -0.14 -1.03 5.68 -27.89 -0.16 -1.19 16 18 C -0.03 -0.26 5.00 -27.88 -0.14 -0.40 16 19 C -0.16 -1.20 5.76 -36.00 -0.21 -1.40 16 20 C -0.14 -1.02 9.94 -41.18 -0.41 -1.42 16 21 C -0.04 -0.33 6.27 -41.17 -0.26 -0.59 16 22 Cl -0.05 -0.41 29.11 -51.86 -1.51 -1.92 16 23 C -0.22 -1.51 11.08 29.05 0.32 -1.19 16 24 S 0.15 1.06 23.33 -107.50 -2.51 -1.45 16 25 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 26 H 0.38 10.19 7.66 -40.82 -0.31 9.88 16 27 H 0.03 0.49 7.79 -51.93 -0.40 0.09 16 28 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 29 H 0.11 1.69 7.84 -52.49 -0.41 1.28 16 30 H 0.11 1.40 7.84 -52.49 -0.41 0.99 16 31 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 32 H 0.07 0.91 7.79 -51.93 -0.40 0.51 16 33 H 0.40 3.53 8.46 -40.82 -0.35 3.18 16 34 H 0.10 0.65 8.14 -51.93 -0.42 0.23 16 35 H 0.10 0.58 8.14 -51.93 -0.42 0.15 16 36 H 0.09 0.74 8.10 -51.93 -0.42 0.32 16 37 H 0.09 0.74 8.10 -51.93 -0.42 0.32 16 38 H 0.15 0.95 8.06 -52.49 -0.42 0.53 16 39 H 0.17 0.90 8.06 -52.49 -0.42 0.48 16 LS Contribution 370.24 15.07 5.58 5.58 Total: -1.00 -32.37 370.24 -10.46 -42.83 By element: Atomic # 1 Polarization: 12.72 SS G_CDS: -5.21 Total: 7.50 kcal Atomic # 6 Polarization: -5.94 SS G_CDS: -1.92 Total: -7.86 kcal Atomic # 7 Polarization: -54.00 SS G_CDS: 0.04 Total: -53.96 kcal Atomic # 8 Polarization: -7.96 SS G_CDS: 0.09 Total: -7.87 kcal Atomic # 14 Polarization: 22.17 SS G_CDS: -5.02 Total: 17.15 kcal Atomic # 16 Polarization: 1.06 SS G_CDS: -2.51 Total: -1.45 kcal Atomic # 17 Polarization: -0.41 SS G_CDS: -1.51 Total: -1.92 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -32.37 -10.46 -42.83 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699314071.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.746 kcal (2) G-P(sol) polarization free energy of solvation -32.372 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.374 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.460 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.832 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.914 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds