Wall clock time and date at job start Tue Mar 31 2020 15:41:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86800 * 119.99776 * 2 1 4 4 H 1.48500 * 109.47045 * 180.02562 * 3 2 1 5 5 H 1.48492 * 109.47426 * 300.00180 * 3 2 1 6 6 H 1.48501 * 109.46833 * 60.00423 * 3 2 1 7 7 C 1.38811 * 119.99773 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99701 * 179.73016 * 7 2 1 9 9 N 1.36935 * 120.00369 * 359.97438 * 7 2 1 10 10 C 1.46499 * 119.99926 * 179.73019 * 9 7 2 11 11 C 1.50699 * 109.46700 * 180.02562 * 10 9 7 12 12 C 1.31006 * 120.00263 * 125.00023 * 11 10 9 13 13 C 1.50698 * 120.00161 * 179.97438 * 12 11 10 14 14 N 1.46505 * 109.46836 * 124.99857 * 13 12 11 15 15 C 1.34776 * 119.99942 * 180.02562 * 14 13 12 16 16 O 1.21288 * 119.99896 * 359.97438 * 15 14 13 17 17 C 1.50691 * 120.00055 * 180.02562 * 15 14 13 18 18 C 1.53001 * 109.47355 * 179.97438 * 17 15 14 19 19 C 1.50704 * 109.47255 * 179.97438 * 18 17 15 20 20 C 1.33402 * 125.19025 * 90.00408 * 19 18 17 21 21 C 1.38484 * 114.90921 * 179.97438 * 20 19 18 22 22 Cl 1.73599 * 122.55119 * 179.97438 * 21 20 19 23 23 C 1.33439 * 114.89951 * 0.02562 * 21 20 19 24 24 S 1.75881 * 125.19863 * 269.69688 * 19 18 17 25 25 H 0.97004 * 120.00382 * 359.97438 * 1 2 3 26 26 H 0.97005 * 119.99813 * 359.72895 * 9 7 2 27 27 H 1.08998 * 109.47134 * 299.99639 * 10 9 7 28 28 H 1.08994 * 109.47397 * 59.99931 * 10 9 7 29 29 H 1.08001 * 120.00027 * 304.99186 * 11 10 9 30 30 H 1.07994 * 119.99490 * 359.97438 * 12 11 10 31 31 H 1.08996 * 109.47371 * 245.00207 * 13 12 11 32 32 H 1.09006 * 109.46786 * 5.00360 * 13 12 11 33 33 H 0.97001 * 119.99738 * 359.97438 * 14 13 12 34 34 H 1.08996 * 109.47285 * 299.99949 * 17 15 14 35 35 H 1.09000 * 109.47384 * 59.99975 * 17 15 14 36 36 H 1.08996 * 109.47302 * 300.00453 * 18 17 15 37 37 H 1.09002 * 109.46981 * 59.99858 * 18 17 15 38 38 H 1.07999 * 122.55174 * 0.02562 * 20 19 18 39 39 H 1.07997 * 125.20002 * 179.97438 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.7101 1.3465 -0.0006 5 1 1.8914 2.3965 -1.2124 6 1 1.8914 2.3964 1.2126 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0049 9 7 1.3255 -2.3881 -0.0005 10 6 2.0581 -3.6568 -0.0071 11 6 1.0787 -4.8022 -0.0063 12 6 1.1438 -5.7203 -0.9385 13 6 0.1649 -6.8660 -0.9373 14 7 -0.5172 -6.9267 -2.2325 15 6 -1.4435 -7.8784 -2.4623 16 8 -1.7120 -8.6849 -1.5971 17 6 -2.1446 -7.9413 -3.7947 18 6 -3.1387 -9.1044 -3.7936 19 6 -3.8404 -9.1668 -5.1259 20 6 -3.4212 -9.8632 -6.1836 21 6 -4.2321 -9.7694 -7.3023 22 17 -3.8739 -10.5940 -8.7874 23 6 -5.3092 -8.9962 -7.1522 24 16 -5.3409 -8.3387 -5.5212 25 1 -0.4851 0.8400 0.0004 26 1 0.3555 -2.3881 0.0038 27 1 2.6807 -3.7122 -0.9000 28 1 2.6887 -3.7168 0.8799 29 1 0.3233 -4.8662 0.7629 30 1 1.8991 -5.6561 -1.7077 31 1 0.6990 -7.8002 -0.7638 32 1 -0.5700 -6.7152 -0.1464 33 1 -0.3027 -6.2815 -2.9243 34 1 -2.6783 -7.0070 -3.9689 35 1 -1.4097 -8.0927 -4.5853 36 1 -2.6047 -10.0385 -3.6196 37 1 -3.8737 -8.9534 -3.0030 38 1 -2.5185 -10.4559 -6.1686 39 1 -6.0506 -8.8066 -7.9143 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001699314071.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:41:05 Heat of formation + Delta-G solvation = -14.830293 kcal Electronic energy + Delta-G solvation = -20951.033143 eV Core-core repulsion = 17431.616688 eV Total energy + Delta-G solvation = -3519.416456 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 328.075 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.80680 -39.26247 -37.70698 -37.19915 -36.22537 -34.61615 -34.34770 -32.42463 -30.16593 -28.57206 -26.50631 -25.44235 -23.82228 -23.18874 -21.56201 -20.63052 -20.35294 -19.12705 -18.61534 -17.83908 -17.10842 -16.86995 -16.69746 -16.62910 -15.75724 -15.41203 -15.17829 -14.96809 -14.82798 -14.61859 -14.21599 -14.06849 -13.71714 -13.53101 -13.34693 -13.25951 -13.19687 -12.87650 -12.75451 -12.22349 -12.17184 -12.14538 -12.03257 -11.98622 -11.77481 -11.64034 -11.12442 -10.99072 -10.33552 -9.95282 -9.73639 -9.38201 -9.01588 -7.96672 -5.26430 -0.16802 0.32056 0.72307 1.07187 1.45641 1.48595 1.49201 1.59499 1.61254 1.64211 2.41046 2.56808 3.37420 3.58060 3.74948 3.90089 4.05075 4.08395 4.10691 4.23199 4.24087 4.40774 4.48642 4.61165 4.67716 4.71824 4.75725 4.93064 4.96332 5.01322 5.05356 5.08295 5.23294 5.38856 5.47793 5.67013 5.84700 6.25757 6.55559 7.23822 7.31800 8.05988 8.29820 9.26985 Molecular weight = 328.08amu Principal moments of inertia in cm(-1) A = 0.015257 B = 0.001675 C = 0.001591 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1834.761554 B =16708.822734 C =17594.745211 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.969 5.969 2 C -0.077 4.077 3 Si 0.976 3.024 4 H -0.265 1.265 5 H -0.292 1.292 6 H -0.293 1.293 7 C -0.248 4.248 8 H 0.078 0.922 9 N -0.744 5.744 10 C 0.173 3.827 11 C -0.133 4.133 12 C -0.161 4.161 13 C 0.157 3.843 14 N -0.719 5.719 15 C 0.511 3.489 16 O -0.585 6.585 17 C -0.129 4.129 18 C -0.029 4.029 19 C -0.167 4.167 20 C -0.138 4.138 21 C -0.056 4.056 22 Cl -0.056 7.056 23 C -0.215 4.215 24 S 0.156 5.844 25 H 0.252 0.748 26 H 0.374 0.626 27 H 0.034 0.966 28 H 0.030 0.970 29 H 0.107 0.893 30 H 0.130 0.870 31 H 0.079 0.921 32 H 0.058 0.942 33 H 0.415 0.585 34 H 0.111 0.889 35 H 0.122 0.878 36 H 0.091 0.909 37 H 0.077 0.923 38 H 0.159 0.841 39 H 0.189 0.811 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.903 -23.165 -16.393 29.742 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.620 5.620 2 C -0.269 4.269 3 Si 0.805 3.195 4 H -0.189 1.189 5 H -0.219 1.219 6 H -0.221 1.221 7 C -0.380 4.380 8 H 0.096 0.904 9 N -0.387 5.387 10 C 0.047 3.953 11 C -0.153 4.153 12 C -0.180 4.180 13 C 0.033 3.967 14 N -0.370 5.370 15 C 0.299 3.701 16 O -0.466 6.466 17 C -0.169 4.169 18 C -0.069 4.069 19 C -0.285 4.285 20 C -0.168 4.168 21 C -0.096 4.096 22 Cl -0.028 7.028 23 C -0.352 4.352 24 S 0.420 5.580 25 H 0.061 0.939 26 H 0.206 0.794 27 H 0.051 0.949 28 H 0.048 0.952 29 H 0.125 0.875 30 H 0.148 0.852 31 H 0.097 0.903 32 H 0.076 0.924 33 H 0.252 0.748 34 H 0.129 0.871 35 H 0.140 0.860 36 H 0.110 0.890 37 H 0.095 0.905 38 H 0.176 0.824 39 H 0.206 0.794 Dipole moment (debyes) X Y Z Total from point charges -9.864 -22.760 -15.128 29.055 hybrid contribution 0.979 0.351 -0.999 1.443 sum -8.885 -22.409 -16.128 29.003 Atomic orbital electron populations 1.69828 1.06673 1.26121 1.59380 1.25619 0.96460 1.01255 1.03548 0.85034 0.78250 0.79528 0.76695 1.18909 1.21880 1.22066 1.19715 0.91650 0.85221 1.41374 0.90362 1.42537 1.05704 1.00933 1.89515 1.19918 0.93191 0.83710 0.98485 1.23003 0.98848 0.94342 0.99088 1.22793 1.00051 0.95495 0.99648 1.20211 0.93479 0.97327 0.85656 1.46025 1.40675 1.33288 1.17050 1.21138 0.78995 0.79750 0.90198 1.90700 1.65578 1.41918 1.48371 1.21699 0.99650 1.01380 0.94210 1.19813 0.97038 0.99600 0.90445 1.24429 1.00170 1.03835 1.00032 1.20005 1.02565 1.03337 0.90934 1.19899 0.97980 1.01649 0.90055 1.98372 1.94668 1.77481 1.32256 1.25844 1.03063 1.04105 1.02188 1.84595 1.21064 1.48034 1.04339 0.93933 0.79400 0.94856 0.95250 0.87538 0.85177 0.90300 0.92400 0.74812 0.87111 0.86032 0.89028 0.90486 0.82350 0.79405 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -58.97 13.06 21.65 0.28 -58.68 16 2 C -0.08 -4.37 5.50 84.86 0.47 -3.90 16 3 Si 0.98 45.53 29.55 68.60 2.03 47.55 16 4 H -0.26 -11.54 7.11 99.48 0.71 -10.83 16 5 H -0.29 -13.53 7.11 99.48 0.71 -12.83 16 6 H -0.29 -13.71 7.11 99.48 0.71 -13.00 16 7 C -0.25 -13.74 9.99 84.03 0.84 -12.90 16 8 H 0.08 4.14 7.83 -2.91 -0.02 4.11 16 9 N -0.74 -37.53 5.59 -347.19 -1.94 -39.48 16 10 C 0.17 6.67 6.70 85.63 0.57 7.24 16 11 C -0.13 -4.09 9.24 25.64 0.24 -3.86 16 12 C -0.16 -3.86 9.24 25.64 0.24 -3.62 16 13 C 0.16 3.50 6.11 85.63 0.52 4.02 16 14 N -0.72 -13.74 5.55 -466.78 -2.59 -16.33 16 15 C 0.51 10.46 7.83 87.65 0.69 11.15 16 16 O -0.59 -16.72 15.98 -3.05 -0.05 -16.77 16 17 C -0.13 -1.67 5.68 29.85 0.17 -1.50 16 18 C -0.03 -0.42 5.00 29.85 0.15 -0.27 16 19 C -0.17 -2.24 5.76 24.59 0.14 -2.09 16 20 C -0.14 -1.86 9.94 21.23 0.21 -1.65 16 21 C -0.06 -0.79 6.27 21.24 0.13 -0.66 16 22 Cl -0.06 -0.79 29.11 -2.72 -0.08 -0.87 16 23 C -0.22 -2.68 11.08 66.73 0.74 -1.94 16 24 S 0.16 1.97 23.33 -56.49 -1.32 0.65 16 25 H 0.25 14.78 8.31 -92.71 -0.77 14.01 16 26 H 0.37 20.13 7.66 -92.70 -0.71 19.42 16 27 H 0.03 1.24 7.79 -2.39 -0.02 1.22 16 28 H 0.03 1.15 8.14 -2.39 -0.02 1.13 16 29 H 0.11 3.32 7.84 -2.91 -0.02 3.29 16 30 H 0.13 2.78 7.84 -2.91 -0.02 2.75 16 31 H 0.08 1.70 8.14 -2.39 -0.02 1.68 16 32 H 0.06 1.47 7.79 -2.38 -0.02 1.45 16 33 H 0.42 6.17 8.46 -92.71 -0.78 5.39 16 34 H 0.11 1.21 8.14 -2.39 -0.02 1.19 16 35 H 0.12 1.06 8.14 -2.39 -0.02 1.04 16 36 H 0.09 1.36 8.10 -2.39 -0.02 1.34 16 37 H 0.08 1.26 8.10 -2.39 -0.02 1.24 16 38 H 0.16 1.77 8.06 -2.91 -0.02 1.74 16 39 H 0.19 1.64 8.06 -2.91 -0.02 1.61 16 Total: -1.00 -68.96 370.24 1.03 -67.94 By element: Atomic # 1 Polarization: 26.38 SS G_CDS: -0.41 Total: 25.97 kcal Atomic # 6 Polarization: -15.09 SS G_CDS: 5.11 Total: -9.98 kcal Atomic # 7 Polarization: -110.24 SS G_CDS: -4.25 Total: -114.49 kcal Atomic # 8 Polarization: -16.72 SS G_CDS: -0.05 Total: -16.77 kcal Atomic # 14 Polarization: 45.53 SS G_CDS: 2.03 Total: 47.55 kcal Atomic # 16 Polarization: 1.97 SS G_CDS: -1.32 Total: 0.65 kcal Atomic # 17 Polarization: -0.79 SS G_CDS: -0.08 Total: -0.87 kcal Total: -68.96 1.03 -67.94 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699314071.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.106 kcal (2) G-P(sol) polarization free energy of solvation -68.962 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.856 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.026 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.937 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.830 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds