Wall clock time and date at job start Tue Mar 31 2020 15:41:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86805 * 119.99971 * 2 1 4 4 H 1.48495 * 109.47072 * 270.00289 * 3 2 1 5 5 H 1.48504 * 109.46836 * 30.00035 * 3 2 1 6 6 H 1.48498 * 109.47035 * 149.99837 * 3 2 1 7 7 C 1.38811 * 119.99809 * 180.02562 * 2 1 3 8 8 H 1.08007 * 119.99493 * 180.02562 * 7 2 1 9 9 N 1.36927 * 120.00409 * 359.97438 * 7 2 1 10 10 C 1.46504 * 120.00137 * 180.02562 * 9 7 2 11 11 C 1.50703 * 109.46896 * 180.02562 * 10 9 7 12 12 C 1.31003 * 119.99784 * 127.00830 * 11 10 9 13 13 C 1.50695 * 119.99993 * 7.55518 * 12 11 10 14 14 N 1.46503 * 109.47314 * 127.16120 * 13 12 11 15 15 C 1.34770 * 120.00159 * 180.27475 * 14 13 12 16 16 O 1.21279 * 120.00257 * 359.72428 * 15 14 13 17 17 C 1.50705 * 119.99671 * 179.72069 * 15 14 13 18 18 C 1.53003 * 109.46894 * 180.02562 * 17 15 14 19 19 C 1.50700 * 109.47220 * 180.02562 * 18 17 15 20 20 C 1.33405 * 125.19387 * 89.99557 * 19 18 17 21 21 C 1.38477 * 114.90825 * 180.02562 * 20 19 18 22 22 Cl 1.73602 * 122.54644 * 179.97438 * 21 20 19 23 23 C 1.33437 * 114.90433 * 0.02562 * 21 20 19 24 24 S 1.75880 * 125.19636 * 269.69653 * 19 18 17 25 25 H 0.97004 * 119.99879 * 0.02562 * 1 2 3 26 26 H 0.97007 * 119.99797 * 0.02562 * 9 7 2 27 27 H 1.08994 * 109.47066 * 60.00065 * 10 9 7 28 28 H 1.09003 * 109.47004 * 299.99725 * 10 9 7 29 29 H 1.08005 * 120.00273 * 307.00497 * 11 10 9 30 30 H 1.07997 * 119.99749 * 187.56130 * 12 11 10 31 31 H 1.09000 * 109.47307 * 7.15352 * 13 12 11 32 32 H 1.09001 * 109.47375 * 247.15813 * 13 12 11 33 33 H 0.97007 * 119.99258 * 359.97438 * 14 13 12 34 34 H 1.08993 * 109.47098 * 299.99844 * 17 15 14 35 35 H 1.08997 * 109.46840 * 60.00492 * 17 15 14 36 36 H 1.09000 * 109.47172 * 300.00050 * 18 17 15 37 37 H 1.09001 * 109.47010 * 59.99725 * 18 17 15 38 38 H 1.07995 * 122.54670 * 0.02782 * 20 19 18 39 39 H 1.07999 * 125.20281 * 179.97438 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4977 2.0465 -1.4000 5 1 1.4476 2.6527 0.7001 6 1 3.5478 1.4402 0.7001 7 6 2.0102 -1.2022 -0.0005 8 1 3.0903 -1.2021 -0.0001 9 7 1.3257 -2.3880 -0.0005 10 6 2.0582 -3.6568 -0.0005 11 6 1.0788 -4.8022 -0.0012 12 6 1.1726 -5.7436 -0.9073 13 6 2.3549 -5.7754 -1.8412 14 7 2.9766 -7.1013 -1.7971 15 6 4.0620 -7.3621 -2.5522 16 8 4.5211 -6.5008 -3.2721 17 6 4.7051 -8.7241 -2.5020 18 6 5.9092 -8.7546 -3.4455 19 6 6.5521 -10.1167 -3.3958 20 6 6.2347 -11.1458 -4.1831 21 6 6.9619 -12.3017 -3.9535 22 17 6.7112 -13.7590 -4.8630 23 6 7.8692 -12.2106 -2.9793 24 16 7.8404 -10.5901 -2.2961 25 1 -0.4850 0.8401 -0.0004 26 1 0.3556 -2.3880 -0.0005 27 1 2.6848 -3.7145 0.8894 28 1 2.6848 -3.7145 -0.8906 29 1 0.2997 -4.8470 0.7454 30 1 0.4026 -6.4968 -0.9851 31 1 3.0812 -5.0231 -1.5337 32 1 2.0212 -5.5643 -2.8572 33 1 2.6095 -7.7901 -1.2210 34 1 5.0360 -8.9324 -1.4845 35 1 3.9820 -9.4790 -2.8107 36 1 5.5788 -8.5461 -4.4631 37 1 6.6322 -7.9996 -3.1364 38 1 5.4688 -11.0824 -4.9419 39 1 8.5246 -13.0083 -2.6623 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001699314072.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:41:08 Heat of formation + Delta-G solvation = 14.096542 kcal Electronic energy + Delta-G solvation = -21160.238850 eV Core-core repulsion = 17642.076756 eV Total energy + Delta-G solvation = -3518.162094 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 328.075 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -39.89112 -38.71293 -36.78176 -36.52955 -34.55433 -33.93356 -32.83956 -30.51718 -29.42401 -26.90858 -25.47280 -24.55816 -22.83851 -22.49754 -20.49730 -19.83402 -18.74665 -17.98941 -17.18276 -16.63666 -16.36943 -16.21061 -15.86746 -15.11959 -14.47297 -14.39591 -14.10840 -13.80794 -13.53468 -13.48881 -13.31361 -13.14273 -12.81750 -12.61527 -12.59659 -12.32414 -11.76169 -11.67327 -11.61587 -11.46635 -11.09780 -10.96539 -10.81351 -10.44753 -10.05825 -10.04479 -9.78694 -9.24241 -9.17970 -9.03942 -8.86192 -8.62344 -6.93256 -5.77823 -3.07097 0.35335 0.83331 1.24201 1.98463 2.13550 2.23920 2.55427 3.29354 3.44494 3.49559 3.51125 4.21314 4.50252 4.58596 4.60841 4.66328 4.81238 4.92771 5.04935 5.17289 5.22740 5.28079 5.48300 5.55283 5.58869 5.66375 5.67849 5.79776 5.86703 5.94612 6.22594 6.30069 6.51912 6.55877 6.85061 7.11889 7.43482 7.69368 8.14630 8.40549 9.51999 10.07674 10.43023 11.44903 Molecular weight = 328.08amu Principal moments of inertia in cm(-1) A = 0.027097 B = 0.001611 C = 0.001567 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1033.086572 B =17375.533154 C =17862.984908 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C -0.013 4.013 3 Si 0.909 3.091 4 H -0.289 1.289 5 H -0.291 1.291 6 H -0.281 1.281 7 C -0.242 4.242 8 H 0.072 0.928 9 N -0.728 5.728 10 C 0.161 3.839 11 C -0.109 4.109 12 C -0.200 4.200 13 C 0.140 3.860 14 N -0.723 5.723 15 C 0.509 3.491 16 O -0.539 6.539 17 C -0.136 4.136 18 C -0.036 4.036 19 C -0.160 4.160 20 C -0.137 4.137 21 C -0.041 4.041 22 Cl -0.054 7.054 23 C -0.218 4.218 24 S 0.149 5.851 25 H 0.255 0.745 26 H 0.385 0.615 27 H 0.028 0.972 28 H 0.036 0.964 29 H 0.113 0.887 30 H 0.111 0.889 31 H 0.089 0.911 32 H 0.071 0.929 33 H 0.399 0.601 34 H 0.096 0.904 35 H 0.097 0.903 36 H 0.096 0.904 37 H 0.088 0.912 38 H 0.151 0.849 39 H 0.173 0.827 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.895 -30.428 -5.669 33.530 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.209 4.209 3 Si 0.740 3.260 4 H -0.216 1.216 5 H -0.217 1.217 6 H -0.207 1.207 7 C -0.373 4.373 8 H 0.089 0.911 9 N -0.372 5.372 10 C 0.035 3.965 11 C -0.128 4.128 12 C -0.220 4.220 13 C 0.017 3.983 14 N -0.375 5.375 15 C 0.294 3.706 16 O -0.416 6.416 17 C -0.176 4.176 18 C -0.075 4.075 19 C -0.278 4.278 20 C -0.167 4.167 21 C -0.081 4.081 22 Cl -0.025 7.025 23 C -0.355 4.355 24 S 0.413 5.587 25 H 0.065 0.935 26 H 0.218 0.782 27 H 0.046 0.954 28 H 0.053 0.947 29 H 0.131 0.869 30 H 0.129 0.871 31 H 0.107 0.893 32 H 0.089 0.911 33 H 0.233 0.767 34 H 0.114 0.886 35 H 0.116 0.884 36 H 0.114 0.886 37 H 0.107 0.893 38 H 0.168 0.832 39 H 0.191 0.809 Dipole moment (debyes) X Y Z Total from point charges 14.160 -29.064 -5.125 32.733 hybrid contribution -0.997 -0.423 -0.839 1.370 sum 13.163 -29.487 -5.964 32.838 Atomic orbital electron populations 1.69669 1.05139 1.25726 1.57594 1.24760 0.95565 0.97761 1.02838 0.86156 0.78631 0.83615 0.77593 1.21619 1.21724 1.20700 1.19248 0.91108 0.83988 1.42931 0.91052 1.42267 1.05898 0.99494 1.89528 1.20013 0.92993 0.84780 0.98742 1.23305 0.99053 0.94723 0.95723 1.22588 0.98865 1.02158 0.98363 1.20574 0.94082 0.84027 0.99567 1.46060 1.30434 1.15439 1.45542 1.20547 0.80333 0.89802 0.79872 1.90748 1.62821 1.48052 1.39950 1.21680 0.98261 0.95521 1.02180 1.19927 0.95975 0.89888 1.01742 1.24506 1.01906 1.00295 1.01057 1.19885 1.02979 0.90894 1.02912 1.19785 1.00463 0.90038 0.97823 1.98376 1.96223 1.34607 1.73334 1.25586 1.05345 1.02167 1.02357 1.84561 1.34329 1.03196 1.36644 0.93471 0.78160 0.95432 0.94673 0.86887 0.87067 0.89288 0.91080 0.76687 0.88597 0.88437 0.88610 0.89322 0.83167 0.80918 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.41 13.06 55.49 0.72 -27.68 16 2 C -0.01 -0.38 5.50 -17.43 -0.10 -0.48 16 3 Si 0.91 22.64 29.55 -169.99 -5.02 17.62 16 4 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 5 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 6 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 7 C -0.24 -6.88 9.99 -15.06 -0.15 -7.03 16 8 H 0.07 1.97 7.83 -52.48 -0.41 1.56 16 9 N -0.73 -18.69 5.59 -61.08 -0.34 -19.04 16 10 C 0.16 3.25 6.35 -5.19 -0.03 3.22 16 11 C -0.11 -1.72 9.63 -36.03 -0.35 -2.07 16 12 C -0.20 -2.62 9.63 -36.03 -0.35 -2.97 16 13 C 0.14 1.90 5.76 -5.19 -0.03 1.87 16 14 N -0.72 -7.54 5.55 -61.47 -0.34 -7.88 16 15 C 0.51 5.71 7.83 -10.99 -0.09 5.63 16 16 O -0.54 -8.49 15.98 5.56 0.09 -8.40 16 17 C -0.14 -0.96 5.68 -27.88 -0.16 -1.12 16 18 C -0.04 -0.27 5.00 -27.88 -0.14 -0.41 16 19 C -0.16 -1.14 5.76 -36.00 -0.21 -1.34 16 20 C -0.14 -0.98 9.94 -41.18 -0.41 -1.39 16 21 C -0.04 -0.30 6.27 -41.17 -0.26 -0.56 16 22 Cl -0.05 -0.39 29.11 -51.86 -1.51 -1.90 16 23 C -0.22 -1.41 11.08 29.05 0.32 -1.08 16 24 S 0.15 0.96 23.33 -107.50 -2.51 -1.55 16 25 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 26 H 0.38 10.33 7.66 -40.82 -0.31 10.02 16 27 H 0.03 0.57 8.14 -51.93 -0.42 0.14 16 28 H 0.04 0.72 5.29 -51.93 -0.27 0.45 16 29 H 0.11 1.69 8.06 -52.48 -0.42 1.27 16 30 H 0.11 1.19 8.06 -52.49 -0.42 0.77 16 31 H 0.09 1.43 5.30 -51.93 -0.28 1.15 16 32 H 0.07 1.05 8.14 -51.93 -0.42 0.62 16 33 H 0.40 2.91 8.46 -40.82 -0.35 2.56 16 34 H 0.10 0.54 8.14 -51.93 -0.42 0.12 16 35 H 0.10 0.52 8.14 -51.93 -0.42 0.09 16 36 H 0.10 0.78 8.10 -51.93 -0.42 0.36 16 37 H 0.09 0.76 8.10 -51.93 -0.42 0.34 16 38 H 0.15 0.93 8.06 -52.49 -0.42 0.51 16 39 H 0.17 0.81 8.06 -52.49 -0.42 0.38 16 LS Contribution 365.75 15.07 5.51 5.51 Total: -1.00 -33.24 365.75 -10.32 -43.56 By element: Atomic # 1 Polarization: 12.46 SS G_CDS: -4.98 Total: 7.48 kcal Atomic # 6 Polarization: -5.79 SS G_CDS: -1.94 Total: -7.73 kcal Atomic # 7 Polarization: -54.64 SS G_CDS: 0.04 Total: -54.60 kcal Atomic # 8 Polarization: -8.49 SS G_CDS: 0.09 Total: -8.40 kcal Atomic # 14 Polarization: 22.64 SS G_CDS: -5.02 Total: 17.62 kcal Atomic # 16 Polarization: 0.96 SS G_CDS: -2.51 Total: -1.55 kcal Atomic # 17 Polarization: -0.39 SS G_CDS: -1.51 Total: -1.90 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -33.24 -10.32 -43.56 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699314072.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.656 kcal (2) G-P(sol) polarization free energy of solvation -33.244 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.412 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.316 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.559 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.097 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds