Wall clock time and date at job start Tue Mar 31 2020 15:41:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86805 * 119.99971 * 2 1 4 4 H 1.48495 * 109.47072 * 270.00289 * 3 2 1 5 5 H 1.48504 * 109.46836 * 30.00035 * 3 2 1 6 6 H 1.48498 * 109.47035 * 149.99837 * 3 2 1 7 7 C 1.38811 * 119.99809 * 180.02562 * 2 1 3 8 8 H 1.08007 * 119.99493 * 180.02562 * 7 2 1 9 9 N 1.36927 * 120.00409 * 359.97438 * 7 2 1 10 10 C 1.46504 * 120.00137 * 180.02562 * 9 7 2 11 11 C 1.50703 * 109.46896 * 180.02562 * 10 9 7 12 12 C 1.31003 * 119.99784 * 127.00830 * 11 10 9 13 13 C 1.50695 * 119.99993 * 7.55518 * 12 11 10 14 14 N 1.46503 * 109.47314 * 127.16120 * 13 12 11 15 15 C 1.34770 * 120.00159 * 180.27475 * 14 13 12 16 16 O 1.21279 * 120.00257 * 359.72428 * 15 14 13 17 17 C 1.50705 * 119.99671 * 179.72069 * 15 14 13 18 18 C 1.53003 * 109.46894 * 180.02562 * 17 15 14 19 19 C 1.50700 * 109.47220 * 180.02562 * 18 17 15 20 20 C 1.33405 * 125.19387 * 89.99557 * 19 18 17 21 21 C 1.38477 * 114.90825 * 180.02562 * 20 19 18 22 22 Cl 1.73602 * 122.54644 * 179.97438 * 21 20 19 23 23 C 1.33437 * 114.90433 * 0.02562 * 21 20 19 24 24 S 1.75880 * 125.19636 * 269.69653 * 19 18 17 25 25 H 0.97004 * 119.99879 * 0.02562 * 1 2 3 26 26 H 0.97007 * 119.99797 * 0.02562 * 9 7 2 27 27 H 1.08994 * 109.47066 * 60.00065 * 10 9 7 28 28 H 1.09003 * 109.47004 * 299.99725 * 10 9 7 29 29 H 1.08005 * 120.00273 * 307.00497 * 11 10 9 30 30 H 1.07997 * 119.99749 * 187.56130 * 12 11 10 31 31 H 1.09000 * 109.47307 * 7.15352 * 13 12 11 32 32 H 1.09001 * 109.47375 * 247.15813 * 13 12 11 33 33 H 0.97007 * 119.99258 * 359.97438 * 14 13 12 34 34 H 1.08993 * 109.47098 * 299.99844 * 17 15 14 35 35 H 1.08997 * 109.46840 * 60.00492 * 17 15 14 36 36 H 1.09000 * 109.47172 * 300.00050 * 18 17 15 37 37 H 1.09001 * 109.47010 * 59.99725 * 18 17 15 38 38 H 1.07995 * 122.54670 * 0.02782 * 20 19 18 39 39 H 1.07999 * 125.20281 * 179.97438 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4977 2.0465 -1.4000 5 1 1.4476 2.6527 0.7001 6 1 3.5478 1.4402 0.7001 7 6 2.0102 -1.2022 -0.0005 8 1 3.0903 -1.2021 -0.0001 9 7 1.3257 -2.3880 -0.0005 10 6 2.0582 -3.6568 -0.0005 11 6 1.0788 -4.8022 -0.0012 12 6 1.1726 -5.7436 -0.9073 13 6 2.3549 -5.7754 -1.8412 14 7 2.9766 -7.1013 -1.7971 15 6 4.0620 -7.3621 -2.5522 16 8 4.5211 -6.5008 -3.2721 17 6 4.7051 -8.7241 -2.5020 18 6 5.9092 -8.7546 -3.4455 19 6 6.5521 -10.1167 -3.3958 20 6 6.2347 -11.1458 -4.1831 21 6 6.9619 -12.3017 -3.9535 22 17 6.7112 -13.7590 -4.8630 23 6 7.8692 -12.2106 -2.9793 24 16 7.8404 -10.5901 -2.2961 25 1 -0.4850 0.8401 -0.0004 26 1 0.3556 -2.3880 -0.0005 27 1 2.6848 -3.7145 0.8894 28 1 2.6848 -3.7145 -0.8906 29 1 0.2997 -4.8470 0.7454 30 1 0.4026 -6.4968 -0.9851 31 1 3.0812 -5.0231 -1.5337 32 1 2.0212 -5.5643 -2.8572 33 1 2.6095 -7.7901 -1.2210 34 1 5.0360 -8.9324 -1.4845 35 1 3.9820 -9.4790 -2.8107 36 1 5.5788 -8.5461 -4.4631 37 1 6.6322 -7.9996 -3.1364 38 1 5.4688 -11.0824 -4.9419 39 1 8.5246 -13.0083 -2.6623 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001699314072.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:41:08 Heat of formation + Delta-G solvation = -7.120957 kcal Electronic energy + Delta-G solvation = -21161.158910 eV Core-core repulsion = 17642.076756 eV Total energy + Delta-G solvation = -3519.082154 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 328.075 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.82401 -39.26512 -38.00681 -37.19387 -36.09926 -34.62346 -34.32585 -32.34783 -30.11255 -28.13136 -26.79237 -25.53398 -24.39457 -23.46005 -21.42502 -20.35185 -20.07916 -19.01022 -18.53273 -17.61429 -17.52341 -16.85992 -16.69425 -16.55657 -15.97832 -15.46442 -15.08171 -15.03265 -14.77496 -14.55669 -14.19593 -14.06539 -14.03017 -13.60890 -13.33719 -13.26735 -13.14667 -12.91489 -12.74072 -12.21853 -12.17573 -12.16196 -12.02656 -11.90664 -11.65757 -11.63648 -11.06760 -10.99090 -10.31218 -9.90749 -9.73095 -9.37287 -8.99915 -7.98308 -5.27766 -0.16343 0.32869 0.72389 1.06252 1.45908 1.46536 1.48380 1.56862 1.61976 1.66570 2.39427 2.55837 3.35210 3.58940 3.81377 3.89820 4.06180 4.09150 4.13907 4.17581 4.25831 4.35751 4.42160 4.61295 4.63371 4.72155 4.87814 4.91413 4.96928 5.06059 5.07995 5.10678 5.23767 5.42090 5.45420 5.59489 5.87012 6.24418 6.60254 7.29834 7.30455 8.04308 8.28958 9.25000 Molecular weight = 328.08amu Principal moments of inertia in cm(-1) A = 0.027097 B = 0.001611 C = 0.001567 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1033.086572 B =17375.533154 C =17862.984908 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.967 5.967 2 C -0.073 4.073 3 Si 0.976 3.024 4 H -0.287 1.287 5 H -0.291 1.291 6 H -0.270 1.270 7 C -0.252 4.252 8 H 0.074 0.926 9 N -0.741 5.741 10 C 0.161 3.839 11 C -0.137 4.137 12 C -0.158 4.158 13 C 0.140 3.860 14 N -0.710 5.710 15 C 0.506 3.494 16 O -0.590 6.590 17 C -0.123 4.123 18 C -0.032 4.032 19 C -0.166 4.166 20 C -0.139 4.139 21 C -0.056 4.056 22 Cl -0.057 7.057 23 C -0.215 4.215 24 S 0.161 5.839 25 H 0.253 0.747 26 H 0.376 0.624 27 H 0.024 0.976 28 H 0.033 0.967 29 H 0.124 0.876 30 H 0.151 0.849 31 H 0.061 0.939 32 H 0.060 0.940 33 H 0.419 0.581 34 H 0.117 0.883 35 H 0.124 0.876 36 H 0.087 0.913 37 H 0.075 0.925 38 H 0.157 0.843 39 H 0.190 0.810 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.380 -32.424 -5.368 35.485 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.617 5.617 2 C -0.266 4.266 3 Si 0.804 3.196 4 H -0.214 1.214 5 H -0.217 1.217 6 H -0.194 1.194 7 C -0.383 4.383 8 H 0.092 0.908 9 N -0.384 5.384 10 C 0.035 3.965 11 C -0.156 4.156 12 C -0.177 4.177 13 C 0.016 3.984 14 N -0.363 5.363 15 C 0.294 3.706 16 O -0.470 6.470 17 C -0.164 4.164 18 C -0.072 4.072 19 C -0.284 4.284 20 C -0.169 4.169 21 C -0.096 4.096 22 Cl -0.028 7.028 23 C -0.351 4.351 24 S 0.424 5.576 25 H 0.062 0.938 26 H 0.208 0.792 27 H 0.042 0.958 28 H 0.050 0.950 29 H 0.142 0.858 30 H 0.168 0.832 31 H 0.079 0.921 32 H 0.079 0.921 33 H 0.256 0.744 34 H 0.135 0.865 35 H 0.142 0.858 36 H 0.105 0.895 37 H 0.093 0.907 38 H 0.175 0.825 39 H 0.207 0.793 Dipole moment (debyes) X Y Z Total from point charges 14.663 -31.124 -4.796 34.738 hybrid contribution -1.072 0.072 -0.980 1.454 sum 13.591 -31.052 -5.775 34.385 Atomic orbital electron populations 1.69816 1.06562 1.26232 1.59132 1.25598 0.96491 1.01153 1.03351 0.85116 0.77729 0.79274 0.77491 1.21405 1.21744 1.19445 1.19640 0.91495 0.85388 1.41817 0.90850 1.42477 1.05689 1.00794 1.89464 1.20089 0.93784 0.84419 0.98199 1.23038 0.99516 0.94661 0.98371 1.22805 0.98300 1.01230 0.95355 1.20345 0.93867 0.85186 0.98983 1.45876 1.30152 1.14579 1.45667 1.21305 0.79848 0.90807 0.78657 1.90733 1.64203 1.49990 1.42093 1.21677 0.98217 0.93120 1.03343 1.19819 0.96012 0.89950 1.01438 1.24392 1.02450 0.99862 1.01708 1.19998 1.03121 0.90851 1.02926 1.19882 1.01154 0.90109 0.98436 1.98373 1.96276 1.34718 1.73462 1.25851 1.04966 1.02555 1.01738 1.84548 1.33852 1.03036 1.36154 0.93846 0.79242 0.95792 0.94989 0.85841 0.83179 0.92128 0.92140 0.74384 0.86451 0.85787 0.89500 0.90655 0.82545 0.79317 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -59.80 13.06 21.65 0.28 -59.52 16 2 C -0.07 -4.30 5.50 84.86 0.47 -3.84 16 3 Si 0.98 46.91 29.55 68.60 2.03 48.94 16 4 H -0.29 -13.61 7.11 99.48 0.71 -12.91 16 5 H -0.29 -13.90 7.11 99.48 0.71 -13.19 16 6 H -0.27 -12.30 7.11 99.48 0.71 -11.59 16 7 C -0.25 -14.50 9.99 84.03 0.84 -13.66 16 8 H 0.07 4.09 7.83 -2.91 -0.02 4.07 16 9 N -0.74 -38.76 5.59 -347.17 -1.94 -40.70 16 10 C 0.16 6.55 6.35 85.63 0.54 7.09 16 11 C -0.14 -4.17 9.63 25.64 0.25 -3.93 16 12 C -0.16 -3.75 9.63 25.64 0.25 -3.50 16 13 C 0.14 3.67 5.76 85.63 0.49 4.16 16 14 N -0.71 -13.34 5.55 -466.79 -2.59 -15.93 16 15 C 0.51 10.73 7.83 87.66 0.69 11.41 16 16 O -0.59 -18.75 15.98 -3.03 -0.05 -18.80 16 17 C -0.12 -1.46 5.68 29.85 0.17 -1.29 16 18 C -0.03 -0.47 5.00 29.85 0.15 -0.32 16 19 C -0.17 -2.11 5.76 24.59 0.14 -1.97 16 20 C -0.14 -1.78 9.94 21.23 0.21 -1.57 16 21 C -0.06 -0.74 6.27 21.24 0.13 -0.60 16 22 Cl -0.06 -0.75 29.11 -2.72 -0.08 -0.83 16 23 C -0.21 -2.36 11.08 66.73 0.74 -1.62 16 24 S 0.16 1.79 23.33 -56.49 -1.32 0.47 16 25 H 0.25 15.07 8.31 -92.71 -0.77 14.30 16 26 H 0.38 20.61 7.66 -92.70 -0.71 19.90 16 27 H 0.02 0.99 8.14 -2.39 -0.02 0.97 16 28 H 0.03 1.35 5.29 -2.39 -0.01 1.33 16 29 H 0.12 3.53 8.06 -2.91 -0.02 3.51 16 30 H 0.15 2.52 8.06 -2.91 -0.02 2.50 16 31 H 0.06 1.97 5.30 -2.39 -0.01 1.96 16 32 H 0.06 1.75 8.14 -2.39 -0.02 1.73 16 33 H 0.42 4.65 8.46 -92.70 -0.78 3.86 16 34 H 0.12 0.95 8.14 -2.39 -0.02 0.93 16 35 H 0.12 0.87 8.14 -2.39 -0.02 0.86 16 36 H 0.09 1.39 8.10 -2.39 -0.02 1.37 16 37 H 0.07 1.28 8.10 -2.39 -0.02 1.26 16 38 H 0.16 1.71 8.06 -2.91 -0.02 1.69 16 39 H 0.19 1.35 8.06 -2.91 -0.02 1.33 16 Total: -1.00 -73.10 365.75 1.00 -72.11 By element: Atomic # 1 Polarization: 24.28 SS G_CDS: -0.40 Total: 23.88 kcal Atomic # 6 Polarization: -14.69 SS G_CDS: 5.07 Total: -9.62 kcal Atomic # 7 Polarization: -111.90 SS G_CDS: -4.25 Total: -116.15 kcal Atomic # 8 Polarization: -18.75 SS G_CDS: -0.05 Total: -18.80 kcal Atomic # 14 Polarization: 46.91 SS G_CDS: 2.03 Total: 48.94 kcal Atomic # 16 Polarization: 1.79 SS G_CDS: -1.32 Total: 0.47 kcal Atomic # 17 Polarization: -0.75 SS G_CDS: -0.08 Total: -0.83 kcal Total: -73.10 1.00 -72.11 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699314072.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.985 kcal (2) G-P(sol) polarization free energy of solvation -73.103 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.118 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.997 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.106 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.121 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds