Wall clock time and date at job start Tue Mar 31 2020 15:47:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31630 * 1 3 3 Si 1.86805 * 119.99466 * 2 1 4 4 H 1.48505 * 109.47116 * 240.00234 * 3 2 1 5 5 H 1.48501 * 109.47183 * 0.02562 * 3 2 1 6 6 H 1.48502 * 109.46911 * 120.00394 * 3 2 1 7 7 C 1.38792 * 120.00692 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00524 * 179.97438 * 7 2 1 9 9 S 1.76201 * 119.99685 * 359.97438 * 7 2 1 10 10 C 1.80998 * 100.00018 * 179.97438 * 9 7 2 11 11 C 1.50706 * 109.47238 * 179.97438 * 10 9 7 12 12 O 1.21276 * 119.99819 * 0.02562 * 11 10 9 13 13 N 1.34774 * 119.99740 * 180.02562 * 11 10 9 14 14 C 1.46506 * 119.99877 * 180.02562 * 13 11 10 15 15 H 1.09002 * 110.28384 * 35.66929 * 14 13 11 16 16 C 1.54259 * 110.32188 * 273.54775 * 14 13 11 17 17 C 1.54384 * 105.06044 * 241.10169 * 16 14 13 18 18 N 1.48562 * 104.59069 * 23.85401 * 17 16 14 19 19 C 1.46903 * 110.99877 * 200.96313 * 18 17 16 20 20 C 1.50710 * 109.46867 * 290.12646 * 19 18 17 21 21 C 1.38121 * 123.88451 * 94.72281 * 20 19 18 22 22 N 1.30421 * 112.22598 * 179.84996 * 21 20 19 23 23 S 1.56004 * 108.39928 * 0.39740 * 22 21 20 24 24 N 1.30414 * 123.88423 * 275.02517 * 20 19 18 25 25 C 1.48565 * 104.22205 * 320.51394 * 18 17 16 26 26 H 0.96997 * 120.00353 * 359.97438 * 1 2 3 27 27 H 1.09001 * 109.47193 * 59.99807 * 10 9 7 28 28 H 1.08998 * 109.47238 * 300.00287 * 10 9 7 29 29 H 0.96996 * 120.00567 * 359.97438 * 13 11 10 30 30 H 1.09006 * 110.32515 * 359.97438 * 16 14 13 31 31 H 1.09001 * 110.32790 * 122.10515 * 16 14 13 32 32 H 1.08996 * 110.41250 * 142.62571 * 17 16 14 33 33 H 1.09002 * 110.41202 * 265.07904 * 17 16 14 34 34 H 1.09004 * 109.47045 * 50.12247 * 19 18 17 35 35 H 1.08996 * 109.47453 * 170.12677 * 19 18 17 36 36 H 1.08001 * 123.88802 * 0.02562 * 21 20 19 37 37 H 1.08995 * 110.41514 * 280.70328 * 25 18 17 38 38 H 1.08998 * 110.40856 * 158.26509 * 25 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6179 0.0000 4 1 3.1039 1.6966 -1.2126 5 1 1.2851 2.7465 0.0006 6 1 3.1040 1.6965 1.2125 7 6 2.0104 -1.2019 -0.0005 8 1 3.0904 -1.2019 -0.0010 9 16 1.1295 -2.7279 -0.0005 10 6 2.5161 -3.8912 -0.0021 11 6 1.9877 -5.3026 -0.0017 12 8 0.7915 -5.5023 -0.0009 13 7 2.8446 -6.3429 -0.0022 14 6 2.3310 -7.7150 -0.0024 15 1 1.4204 -7.7775 -0.5983 16 6 2.0598 -8.1857 1.4414 17 6 2.9868 -9.4029 1.6473 18 7 4.0832 -9.2089 0.6638 19 6 4.7646 -10.4785 0.3777 20 6 5.5521 -10.9098 1.5882 21 6 5.0746 -11.7820 2.5469 22 7 5.9455 -12.0001 3.4929 23 16 7.2272 -11.1660 3.1842 24 7 6.7607 -10.4980 1.8538 25 6 3.3990 -8.6873 -0.5474 26 1 -0.4850 0.8400 0.0004 27 1 3.1254 -3.7315 0.8874 28 1 3.1240 -3.7307 -0.8925 29 1 3.8013 -6.1833 -0.0032 30 1 2.3092 -7.3960 2.1502 31 1 1.0162 -8.4794 1.5542 32 1 3.3838 -9.4109 2.6624 33 1 2.4501 -10.3288 1.4406 34 1 4.0247 -11.2413 0.1350 35 1 5.4404 -10.3460 -0.4671 36 1 4.0941 -12.2337 2.5152 37 1 2.9269 -9.5012 -1.0975 38 1 4.1064 -8.1567 -1.1847 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001713816447.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:47:52 Heat of formation + Delta-G solvation = 33.691209 kcal Electronic energy + Delta-G solvation = -22222.681901 eV Core-core repulsion = 18739.705952 eV Total energy + Delta-G solvation = -3482.975948 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 328.077 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.32079 -39.84306 -38.26332 -34.62259 -33.65895 -32.41367 -31.64350 -29.54260 -28.81234 -27.14520 -25.45764 -24.95898 -21.84280 -21.32643 -20.92919 -20.20443 -19.65189 -17.84900 -16.78406 -16.65393 -16.26741 -16.06778 -15.45989 -15.31425 -14.87953 -14.79059 -14.53303 -14.08957 -13.81923 -13.16149 -13.00925 -12.78922 -12.51151 -12.38249 -12.28510 -11.96996 -11.69805 -11.46851 -11.35043 -11.21520 -11.19513 -11.04228 -11.02748 -11.01773 -10.75007 -9.80733 -9.44394 -9.37408 -9.05575 -9.01282 -8.78974 -8.22407 -6.48249 -6.20082 -3.90508 0.34661 1.19703 1.40019 1.67412 3.05450 3.10821 3.24831 3.28768 3.32873 3.58401 3.74233 4.06590 4.22127 4.25619 4.32016 4.51084 4.72338 4.86470 4.93042 5.01935 5.11751 5.14961 5.17582 5.19790 5.32521 5.34803 5.49535 5.58585 5.66860 5.85061 5.92281 6.02186 6.17689 6.24996 6.37077 6.49761 6.72113 7.60987 7.76724 8.36726 8.64531 9.25187 10.87266 Molecular weight = 328.08amu Principal moments of inertia in cm(-1) A = 0.022607 B = 0.002084 C = 0.001975 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1238.265032 B =13430.104285 C =14173.269356 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.868 5.868 2 C 0.073 3.927 3 Si 0.918 3.082 4 H -0.274 1.274 5 H -0.283 1.283 6 H -0.274 1.274 7 C -0.535 4.535 8 H 0.072 0.928 9 S -0.061 6.061 10 C -0.153 4.153 11 C 0.533 3.467 12 O -0.519 6.519 13 N -0.728 5.728 14 C 0.147 3.853 15 H 0.097 0.903 16 C -0.135 4.135 17 C 0.031 3.969 18 N -0.504 5.504 19 C 0.129 3.871 20 C 0.068 3.932 21 C 0.038 3.962 22 N -0.573 5.573 23 S 0.670 5.330 24 N -0.550 5.550 25 C 0.028 3.972 26 H 0.269 0.731 27 H 0.089 0.911 28 H 0.089 0.911 29 H 0.401 0.599 30 H 0.080 0.920 31 H 0.078 0.922 32 H 0.078 0.922 33 H 0.050 0.950 34 H 0.065 0.935 35 H 0.099 0.901 36 H 0.200 0.800 37 H 0.062 0.938 38 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.833 -26.577 2.498 29.619 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.503 5.503 2 C -0.136 4.136 3 Si 0.745 3.255 4 H -0.199 1.199 5 H -0.208 1.208 6 H -0.199 1.199 7 C -0.684 4.684 8 H 0.090 0.910 9 S 0.166 5.834 10 C -0.304 4.304 11 C 0.319 3.681 12 O -0.393 6.393 13 N -0.382 5.382 14 C 0.040 3.960 15 H 0.115 0.885 16 C -0.175 4.175 17 C -0.097 4.097 18 N -0.229 5.229 19 C -0.004 4.004 20 C -0.107 4.107 21 C -0.157 4.157 22 N -0.414 5.414 23 S 0.714 5.286 24 N -0.394 5.394 25 C -0.100 4.100 26 H 0.078 0.922 27 H 0.107 0.893 28 H 0.108 0.892 29 H 0.236 0.764 30 H 0.098 0.902 31 H 0.097 0.903 32 H 0.097 0.903 33 H 0.068 0.932 34 H 0.083 0.917 35 H 0.117 0.883 36 H 0.217 0.783 37 H 0.080 0.920 38 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 12.935 -26.288 3.796 29.543 hybrid contribution 0.278 0.584 -1.086 1.264 sum 13.213 -25.704 2.709 29.028 Atomic orbital electron populations 1.70006 1.05939 1.27539 1.46863 1.24988 0.95029 0.99012 0.94556 0.86230 0.79235 0.81253 0.78810 1.19934 1.20828 1.19949 1.22830 0.94885 0.91686 1.58959 0.90985 1.85363 1.05003 0.96315 1.96724 1.23531 1.06504 0.95421 1.04934 1.20315 0.86539 0.86314 0.74912 1.90692 1.15374 1.85605 1.47672 1.46071 1.10062 1.04715 1.77385 1.21527 0.96725 0.81539 0.96176 0.88503 1.22798 0.99497 0.97646 0.97537 1.23217 0.91473 0.97716 0.97263 1.65404 1.24581 1.24110 1.08784 1.20644 0.96225 0.91307 0.92250 1.22294 0.90500 0.97559 1.00377 1.23727 1.01635 1.00167 0.90217 1.72376 1.09522 1.28214 1.31332 1.79193 1.18924 1.21677 1.08824 1.72208 1.17659 1.28319 1.21172 1.23419 0.96301 0.97850 0.92477 0.92151 0.89264 0.89241 0.76406 0.90164 0.90315 0.90336 0.93201 0.91708 0.88262 0.78317 0.91977 0.88822 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -26.24 13.22 55.49 0.73 -25.51 16 2 C 0.07 2.10 5.49 -17.43 -0.10 2.01 16 3 Si 0.92 21.50 29.55 -169.99 -5.02 16.48 16 4 H -0.27 -6.25 7.11 56.52 0.40 -5.85 16 5 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 6 H -0.27 -6.27 7.11 56.52 0.40 -5.87 16 7 C -0.54 -15.31 9.50 30.94 0.29 -15.02 16 8 H 0.07 1.95 7.80 -52.49 -0.41 1.54 16 9 S -0.06 -1.65 20.57 -107.50 -2.21 -3.86 16 10 C -0.15 -3.09 6.16 36.01 0.22 -2.87 16 11 C 0.53 9.74 7.84 -10.98 -0.09 9.65 16 12 O -0.52 -11.46 15.56 5.56 0.09 -11.37 16 13 N -0.73 -9.52 5.00 -52.46 -0.26 -9.78 16 14 C 0.15 1.59 3.36 -66.55 -0.22 1.36 16 15 H 0.10 1.18 7.64 -51.93 -0.40 0.78 16 16 C -0.14 -1.40 6.78 -25.35 -0.17 -1.57 16 17 C 0.03 0.24 5.76 -2.18 -0.01 0.23 16 18 N -0.50 -4.04 5.36 -231.40 -1.24 -5.28 16 19 C 0.13 0.82 5.31 -4.97 -0.03 0.79 16 20 C 0.07 0.53 5.94 -83.23 -0.49 0.04 16 21 C 0.04 0.27 11.17 -18.19 -0.20 0.06 16 22 N -0.57 -4.95 11.45 18.96 0.22 -4.74 16 23 S 0.67 5.04 23.71 -107.50 -2.55 2.49 16 24 N -0.55 -5.17 11.45 22.71 0.26 -4.91 16 25 C 0.03 0.21 6.09 -2.18 -0.01 0.20 16 26 H 0.27 7.56 8.31 -40.82 -0.34 7.22 16 27 H 0.09 1.69 8.14 -51.92 -0.42 1.27 16 28 H 0.09 1.67 8.14 -51.92 -0.42 1.25 16 29 H 0.40 4.45 8.55 -40.82 -0.35 4.10 16 30 H 0.08 1.00 7.95 -51.93 -0.41 0.58 16 31 H 0.08 0.80 8.14 -51.93 -0.42 0.37 16 32 H 0.08 0.67 8.12 -51.93 -0.42 0.25 16 33 H 0.05 0.29 7.82 -51.93 -0.41 -0.11 16 34 H 0.06 0.26 7.87 -51.93 -0.41 -0.15 16 35 H 0.10 0.62 8.13 -51.93 -0.42 0.20 16 36 H 0.20 0.83 8.06 -52.49 -0.42 0.40 16 37 H 0.06 0.37 8.00 -51.93 -0.42 -0.05 16 38 H 0.09 0.71 7.99 -51.93 -0.41 0.29 16 LS Contribution 351.27 15.07 5.29 5.29 Total: -1.00 -35.78 351.27 -10.39 -46.17 By element: Atomic # 1 Polarization: 5.01 SS G_CDS: -4.88 Total: 0.13 kcal Atomic # 6 Polarization: -4.30 SS G_CDS: -0.81 Total: -5.11 kcal Atomic # 7 Polarization: -49.93 SS G_CDS: -0.29 Total: -50.22 kcal Atomic # 8 Polarization: -11.46 SS G_CDS: 0.09 Total: -11.37 kcal Atomic # 14 Polarization: 21.50 SS G_CDS: -5.02 Total: 16.48 kcal Atomic # 16 Polarization: 3.39 SS G_CDS: -4.76 Total: -1.37 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -35.78 -10.39 -46.17 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001713816447.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.865 kcal (2) G-P(sol) polarization free energy of solvation -35.783 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.082 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.390 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.174 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.691 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds