Wall clock time and date at job start Tue Mar 31 2020 15:47:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31630 * 1 3 3 Si 1.86805 * 119.99466 * 2 1 4 4 H 1.48505 * 109.47116 * 240.00234 * 3 2 1 5 5 H 1.48501 * 109.47183 * 0.02562 * 3 2 1 6 6 H 1.48502 * 109.46911 * 120.00394 * 3 2 1 7 7 C 1.38792 * 120.00692 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00524 * 179.97438 * 7 2 1 9 9 S 1.76201 * 119.99685 * 359.97438 * 7 2 1 10 10 C 1.80998 * 100.00018 * 179.97438 * 9 7 2 11 11 C 1.50706 * 109.47238 * 179.97438 * 10 9 7 12 12 O 1.21276 * 119.99819 * 0.02562 * 11 10 9 13 13 N 1.34774 * 119.99740 * 180.02562 * 11 10 9 14 14 C 1.46506 * 119.99877 * 180.02562 * 13 11 10 15 15 H 1.09002 * 110.28384 * 35.66929 * 14 13 11 16 16 C 1.54259 * 110.32188 * 273.54775 * 14 13 11 17 17 C 1.54384 * 105.06044 * 241.10169 * 16 14 13 18 18 N 1.48562 * 104.59069 * 23.85401 * 17 16 14 19 19 C 1.46903 * 110.99877 * 200.96313 * 18 17 16 20 20 C 1.50710 * 109.46867 * 290.12646 * 19 18 17 21 21 C 1.38121 * 123.88451 * 94.72281 * 20 19 18 22 22 N 1.30421 * 112.22598 * 179.84996 * 21 20 19 23 23 S 1.56004 * 108.39928 * 0.39740 * 22 21 20 24 24 N 1.30414 * 123.88423 * 275.02517 * 20 19 18 25 25 C 1.48565 * 104.22205 * 320.51394 * 18 17 16 26 26 H 0.96997 * 120.00353 * 359.97438 * 1 2 3 27 27 H 1.09001 * 109.47193 * 59.99807 * 10 9 7 28 28 H 1.08998 * 109.47238 * 300.00287 * 10 9 7 29 29 H 0.96996 * 120.00567 * 359.97438 * 13 11 10 30 30 H 1.09006 * 110.32515 * 359.97438 * 16 14 13 31 31 H 1.09001 * 110.32790 * 122.10515 * 16 14 13 32 32 H 1.08996 * 110.41250 * 142.62571 * 17 16 14 33 33 H 1.09002 * 110.41202 * 265.07904 * 17 16 14 34 34 H 1.09004 * 109.47045 * 50.12247 * 19 18 17 35 35 H 1.08996 * 109.47453 * 170.12677 * 19 18 17 36 36 H 1.08001 * 123.88802 * 0.02562 * 21 20 19 37 37 H 1.08995 * 110.41514 * 280.70328 * 25 18 17 38 38 H 1.08998 * 110.40856 * 158.26509 * 25 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6179 0.0000 4 1 3.1039 1.6966 -1.2126 5 1 1.2851 2.7465 0.0006 6 1 3.1040 1.6965 1.2125 7 6 2.0104 -1.2019 -0.0005 8 1 3.0904 -1.2019 -0.0010 9 16 1.1295 -2.7279 -0.0005 10 6 2.5161 -3.8912 -0.0021 11 6 1.9877 -5.3026 -0.0017 12 8 0.7915 -5.5023 -0.0009 13 7 2.8446 -6.3429 -0.0022 14 6 2.3310 -7.7150 -0.0024 15 1 1.4204 -7.7775 -0.5983 16 6 2.0598 -8.1857 1.4414 17 6 2.9868 -9.4029 1.6473 18 7 4.0832 -9.2089 0.6638 19 6 4.7646 -10.4785 0.3777 20 6 5.5521 -10.9098 1.5882 21 6 5.0746 -11.7820 2.5469 22 7 5.9455 -12.0001 3.4929 23 16 7.2272 -11.1660 3.1842 24 7 6.7607 -10.4980 1.8538 25 6 3.3990 -8.6873 -0.5474 26 1 -0.4850 0.8400 0.0004 27 1 3.1254 -3.7315 0.8874 28 1 3.1240 -3.7307 -0.8925 29 1 3.8013 -6.1833 -0.0032 30 1 2.3092 -7.3960 2.1502 31 1 1.0162 -8.4794 1.5542 32 1 3.3838 -9.4109 2.6624 33 1 2.4501 -10.3288 1.4406 34 1 4.0247 -11.2413 0.1350 35 1 5.4404 -10.3460 -0.4671 36 1 4.0941 -12.2337 2.5152 37 1 2.9269 -9.5012 -1.0975 38 1 4.1064 -8.1567 -1.1847 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001713816447.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:47:51 Heat of formation + Delta-G solvation = 5.141106 kcal Electronic energy + Delta-G solvation = -22223.919926 eV Core-core repulsion = 18739.705952 eV Total energy + Delta-G solvation = -3484.213974 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 328.077 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.88358 -40.92883 -39.31075 -35.58780 -34.58312 -34.40026 -32.57847 -30.75618 -29.60058 -28.05583 -27.57230 -25.52670 -22.49457 -22.35079 -21.53217 -21.33987 -20.23152 -19.83242 -17.96560 -17.56139 -17.12590 -16.87481 -16.80315 -16.40329 -16.18061 -16.02045 -15.69692 -15.15215 -14.79645 -14.57019 -14.33183 -13.90266 -13.47280 -13.23983 -13.16618 -13.09274 -12.88648 -12.81940 -12.64167 -12.53831 -12.14727 -11.97310 -11.91469 -11.80543 -11.74458 -11.68208 -11.12784 -10.89860 -10.27830 -10.12777 -9.94962 -9.43499 -8.65818 -8.34262 -6.12123 -0.22096 0.66815 0.85016 1.15234 1.27665 1.43838 1.47062 1.57305 1.64409 2.26990 2.34054 2.99546 3.02061 3.32785 3.49036 3.58095 3.71205 3.98388 4.03914 4.15035 4.22010 4.30205 4.31934 4.44394 4.52294 4.54497 4.71673 4.73208 4.77035 4.83520 4.90843 5.04568 5.17765 5.41785 5.52213 5.71058 5.82304 5.96745 6.19896 6.55161 7.06881 7.28547 8.74631 Molecular weight = 328.08amu Principal moments of inertia in cm(-1) A = 0.022607 B = 0.002084 C = 0.001975 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1238.265032 B =13430.104285 C =14173.269356 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.911 5.911 2 C 0.013 3.987 3 Si 0.998 3.002 4 H -0.262 1.262 5 H -0.278 1.278 6 H -0.263 1.263 7 C -0.548 4.548 8 H 0.081 0.919 9 S -0.148 6.148 10 C -0.131 4.131 11 C 0.536 3.464 12 O -0.563 6.563 13 N -0.704 5.704 14 C 0.139 3.861 15 H 0.084 0.916 16 C -0.136 4.136 17 C 0.042 3.958 18 N -0.520 5.520 19 C 0.129 3.871 20 C 0.064 3.936 21 C 0.042 3.958 22 N -0.597 5.597 23 S 0.680 5.320 24 N -0.581 5.581 25 C 0.040 3.960 26 H 0.271 0.729 27 H 0.104 0.896 28 H 0.108 0.892 29 H 0.414 0.586 30 H 0.053 0.947 31 H 0.077 0.923 32 H 0.071 0.929 33 H 0.078 0.922 34 H 0.097 0.903 35 H 0.102 0.898 36 H 0.229 0.771 37 H 0.089 0.911 38 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.618 -27.838 2.012 31.507 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.547 5.547 2 C -0.191 4.191 3 Si 0.819 3.181 4 H -0.186 1.186 5 H -0.203 1.203 6 H -0.188 1.188 7 C -0.696 4.696 8 H 0.099 0.901 9 S 0.079 5.921 10 C -0.282 4.282 11 C 0.322 3.678 12 O -0.442 6.442 13 N -0.357 5.357 14 C 0.034 3.966 15 H 0.102 0.898 16 C -0.175 4.175 17 C -0.086 4.086 18 N -0.245 5.245 19 C -0.003 4.003 20 C -0.111 4.111 21 C -0.153 4.153 22 N -0.439 5.439 23 S 0.725 5.275 24 N -0.425 5.425 25 C -0.088 4.088 26 H 0.080 0.920 27 H 0.122 0.878 28 H 0.127 0.873 29 H 0.251 0.749 30 H 0.072 0.928 31 H 0.096 0.904 32 H 0.089 0.911 33 H 0.097 0.903 34 H 0.115 0.885 35 H 0.120 0.880 36 H 0.245 0.755 37 H 0.107 0.893 38 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 14.781 -27.594 3.315 31.479 hybrid contribution -0.236 0.839 -0.917 1.266 sum 14.546 -26.755 2.398 30.548 Atomic orbital electron populations 1.70171 1.07917 1.28669 1.47943 1.26120 0.95984 1.03289 0.93751 0.85017 0.77824 0.75758 0.79474 1.18622 1.20315 1.18788 1.23170 0.95309 0.92131 1.58951 0.90073 1.85509 1.10484 0.99093 1.97037 1.23379 1.03517 0.94779 1.06506 1.19989 0.86285 0.86559 0.74998 1.90679 1.17217 1.86031 1.50247 1.45870 1.10077 1.04749 1.75012 1.21756 0.97576 0.80545 0.96757 0.89819 1.22734 1.00227 0.98183 0.96349 1.23126 0.91014 0.97453 0.97018 1.65351 1.24721 1.25605 1.08856 1.20762 0.96662 0.91298 0.91558 1.22629 0.90182 0.97411 1.00916 1.24178 1.02339 0.99495 0.89298 1.72407 1.10292 1.28988 1.32191 1.79060 1.18692 1.21468 1.08292 1.72202 1.18729 1.29338 1.22197 1.23342 0.95339 0.97670 0.92402 0.91977 0.87789 0.87332 0.74899 0.92774 0.90449 0.91088 0.90345 0.88519 0.88023 0.75504 0.89251 0.88328 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -56.19 13.22 21.65 0.29 -55.90 16 2 C 0.01 0.77 5.49 84.86 0.47 1.23 16 3 Si 1.00 43.88 29.55 68.60 2.03 45.91 16 4 H -0.26 -10.90 7.11 99.48 0.71 -10.20 16 5 H -0.28 -11.89 7.11 99.48 0.71 -11.18 16 6 H -0.26 -11.03 7.11 99.48 0.71 -10.32 16 7 C -0.55 -31.56 9.50 67.95 0.65 -30.91 16 8 H 0.08 4.35 7.80 -2.91 -0.02 4.33 16 9 S -0.15 -8.28 20.57 -56.49 -1.16 -9.45 16 10 C -0.13 -5.23 6.16 71.24 0.44 -4.79 16 11 C 0.54 19.54 7.84 87.66 0.69 20.23 16 12 O -0.56 -25.51 15.56 -3.02 -0.05 -25.55 16 13 N -0.70 -17.54 5.00 -438.29 -2.19 -19.73 16 14 C 0.14 2.80 3.36 45.88 0.15 2.95 16 15 H 0.08 1.96 7.64 -2.39 -0.02 1.95 16 16 C -0.14 -2.65 6.78 31.49 0.21 -2.44 16 17 C 0.04 0.54 5.76 86.45 0.50 1.04 16 18 N -0.52 -6.74 5.36 -886.01 -4.75 -11.49 16 19 C 0.13 1.18 5.31 85.56 0.45 1.63 16 20 C 0.06 0.85 5.94 42.74 0.25 1.10 16 21 C 0.04 0.49 11.17 84.87 0.95 1.43 16 22 N -0.60 -9.40 11.45 -93.93 -1.08 -10.48 16 23 S 0.68 9.61 23.71 -56.49 -1.34 8.27 16 24 N -0.58 -10.06 11.45 -82.07 -0.94 -11.00 16 25 C 0.04 0.49 6.09 86.45 0.53 1.02 16 26 H 0.27 15.55 8.31 -92.71 -0.77 14.78 16 27 H 0.10 3.84 8.14 -2.39 -0.02 3.83 16 28 H 0.11 3.92 8.14 -2.40 -0.02 3.90 16 29 H 0.41 8.33 8.55 -92.71 -0.79 7.54 16 30 H 0.05 1.34 7.95 -2.38 -0.02 1.32 16 31 H 0.08 1.52 8.14 -2.39 -0.02 1.50 16 32 H 0.07 1.06 8.12 -2.39 -0.02 1.04 16 33 H 0.08 0.59 7.82 -2.39 -0.02 0.58 16 34 H 0.10 0.29 7.87 -2.38 -0.02 0.27 16 35 H 0.10 0.92 8.13 -2.39 -0.02 0.90 16 36 H 0.23 1.04 8.06 -2.91 -0.02 1.02 16 37 H 0.09 0.67 8.00 -2.39 -0.02 0.65 16 38 H 0.10 1.15 7.99 -2.39 -0.02 1.13 16 Total: -1.00 -80.29 351.27 -3.60 -83.89 By element: Atomic # 1 Polarization: 12.72 SS G_CDS: 0.30 Total: 13.03 kcal Atomic # 6 Polarization: -12.79 SS G_CDS: 5.29 Total: -7.51 kcal Atomic # 7 Polarization: -99.93 SS G_CDS: -8.67 Total: -108.60 kcal Atomic # 8 Polarization: -25.51 SS G_CDS: -0.05 Total: -25.55 kcal Atomic # 14 Polarization: 43.88 SS G_CDS: 2.03 Total: 45.91 kcal Atomic # 16 Polarization: 1.33 SS G_CDS: -2.50 Total: -1.17 kcal Total: -80.29 -3.60 -83.89 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001713816447.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.035 kcal (2) G-P(sol) polarization free energy of solvation -80.289 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.746 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.604 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.894 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.141 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds