Wall clock time and date at job start Tue Mar 31 2020 15:47:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31628 * 1 3 3 Si 1.86804 * 119.99856 * 2 1 4 4 H 1.48502 * 109.46982 * 179.97438 * 3 2 1 5 5 H 1.48494 * 109.47018 * 299.99672 * 3 2 1 6 6 H 1.48496 * 109.46807 * 60.00033 * 3 2 1 7 7 C 1.38798 * 120.00335 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00324 * 180.02562 * 7 2 1 9 9 S 1.76206 * 119.99806 * 0.02562 * 7 2 1 10 10 C 1.80999 * 100.00016 * 180.02562 * 9 7 2 11 11 C 1.50702 * 109.47330 * 179.97438 * 10 9 7 12 12 O 1.21284 * 119.99523 * 359.97438 * 11 10 9 13 13 N 1.34773 * 120.00346 * 179.97438 * 11 10 9 14 14 C 1.46497 * 119.99973 * 179.97438 * 13 11 10 15 15 H 1.08999 * 110.78582 * 323.20540 * 14 13 11 16 16 C 1.54594 * 110.72610 * 86.45328 * 14 13 11 17 17 C 1.53991 * 105.14285 * 140.31217 * 16 14 13 18 18 N 1.47905 * 107.22505 * 1.12969 * 17 16 14 19 19 C 1.46897 * 111.00050 * 214.25344 * 18 17 16 20 20 C 1.50699 * 109.47189 * 69.87367 * 19 18 17 21 21 C 1.38123 * 123.88802 * 94.99756 * 20 19 18 22 22 N 1.30426 * 112.22756 * 180.02562 * 21 20 19 23 23 S 1.55997 * 108.39950 * 0.02562 * 22 21 20 24 24 N 1.30428 * 123.88745 * 274.70435 * 20 19 18 25 25 C 1.48813 * 105.67450 * 334.90354 * 18 17 16 26 26 H 0.96997 * 120.00341 * 0.02562 * 1 2 3 27 27 H 1.08993 * 109.47471 * 59.99490 * 10 9 7 28 28 H 1.09004 * 109.46906 * 299.99601 * 10 9 7 29 29 H 0.96998 * 119.99772 * 359.97438 * 13 11 10 30 30 H 1.09005 * 110.30718 * 21.40022 * 16 14 13 31 31 H 1.09001 * 110.39460 * 259.27402 * 16 14 13 32 32 H 1.09002 * 109.91707 * 120.58029 * 17 16 14 33 33 H 1.09002 * 109.91668 * 241.67819 * 17 16 14 34 34 H 1.08999 * 109.46987 * 189.86784 * 19 18 17 35 35 H 1.08996 * 109.47203 * 309.87299 * 19 18 17 36 36 H 1.08000 * 123.88594 * 0.03856 * 21 20 19 37 37 H 1.08998 * 110.51915 * 280.54171 * 25 18 17 38 38 H 1.09009 * 110.83927 * 157.56590 * 25 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6178 0.0000 4 1 3.7103 1.3464 0.0006 5 1 1.8915 2.3964 -1.2125 6 1 1.8915 2.3964 1.2125 7 6 2.0103 -1.2020 0.0005 8 1 3.0903 -1.2020 0.0010 9 16 1.1293 -2.7280 0.0005 10 6 2.5159 -3.8914 0.0021 11 6 1.9875 -5.3027 0.0030 12 8 0.7912 -5.5023 0.0030 13 7 2.8442 -6.3431 0.0037 14 6 2.3305 -7.7151 0.0051 15 1 1.4308 -7.7906 0.6158 16 6 2.0545 -8.1974 -1.4375 17 6 2.5183 -9.6655 -1.4665 18 7 3.0011 -9.9992 -0.1088 19 6 4.1263 -10.9417 -0.1671 20 6 5.3383 -10.2431 -0.7275 21 6 6.3218 -9.6640 0.0504 22 7 7.2651 -9.1224 -0.6693 23 16 6.9198 -9.3367 -2.1754 24 7 5.5821 -10.1205 -2.0029 25 6 3.4140 -8.7057 0.5002 26 1 -0.4850 0.8400 -0.0004 27 1 3.1239 -3.7309 0.8924 28 1 3.1252 -3.7317 -0.8875 29 1 3.8010 -6.1835 0.0033 30 1 2.6282 -7.6053 -2.1506 31 1 0.9899 -8.1324 -1.6626 32 1 1.6834 -10.3135 -1.7334 33 1 3.3265 -9.7854 -2.1879 34 1 4.3481 -11.3052 0.8363 35 1 3.8629 -11.7828 -0.8083 36 1 6.3110 -9.6602 1.1303 37 1 4.3991 -8.4105 0.1390 38 1 3.4081 -8.7701 1.5884 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001713816448.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:47:54 Heat of formation + Delta-G solvation = 8.313632 kcal Electronic energy + Delta-G solvation = -22773.978075 eV Core-core repulsion = 19289.901673 eV Total energy + Delta-G solvation = -3484.076402 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 328.077 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -42.22287 -40.88767 -39.29967 -35.76965 -34.59943 -34.37369 -32.68480 -30.94471 -29.26471 -28.31402 -27.64775 -25.50737 -22.76384 -22.51828 -21.68371 -21.09869 -20.27261 -19.85525 -18.08644 -17.91230 -17.19137 -16.89671 -16.75373 -16.50776 -16.19034 -16.04295 -15.43469 -15.20440 -14.90850 -14.65191 -14.39180 -14.13647 -13.77068 -13.36039 -13.17619 -12.95498 -12.91471 -12.83875 -12.61878 -12.45988 -12.30541 -12.11581 -11.96676 -11.82573 -11.72805 -11.63980 -11.17077 -11.00620 -10.29309 -10.19097 -9.98073 -9.60366 -8.68168 -8.36098 -6.14240 -0.27495 0.63583 0.80734 1.10327 1.24940 1.40596 1.45342 1.56296 1.56796 2.15391 2.26042 2.98180 3.01641 3.30680 3.40184 3.51925 3.65519 3.91727 3.95017 4.06094 4.13282 4.22288 4.26637 4.29523 4.47156 4.57392 4.66657 4.70914 4.78749 4.87341 4.93312 4.99685 5.10767 5.36861 5.40828 5.61150 5.78972 5.85391 6.18702 6.42058 7.05379 7.18843 8.73369 Molecular weight = 328.08amu Principal moments of inertia in cm(-1) A = 0.018725 B = 0.002561 C = 0.002344 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1494.950027 B =10929.098187 C =11944.442552 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.911 5.911 2 C 0.013 3.987 3 Si 0.999 3.001 4 H -0.257 1.257 5 H -0.274 1.274 6 H -0.273 1.273 7 C -0.547 4.547 8 H 0.082 0.918 9 S -0.148 6.148 10 C -0.130 4.130 11 C 0.537 3.463 12 O -0.559 6.559 13 N -0.707 5.707 14 C 0.141 3.859 15 H 0.084 0.916 16 C -0.142 4.142 17 C 0.035 3.965 18 N -0.495 5.495 19 C 0.130 3.870 20 C 0.022 3.978 21 C 0.046 3.954 22 N -0.593 5.593 23 S 0.672 5.328 24 N -0.582 5.582 25 C 0.037 3.963 26 H 0.271 0.729 27 H 0.111 0.889 28 H 0.106 0.894 29 H 0.412 0.588 30 H 0.060 0.940 31 H 0.062 0.938 32 H 0.088 0.912 33 H 0.063 0.937 34 H 0.137 0.863 35 H 0.103 0.897 36 H 0.232 0.768 37 H 0.058 0.942 38 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.757 -25.165 -0.741 30.243 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.547 5.547 2 C -0.191 4.191 3 Si 0.821 3.179 4 H -0.181 1.181 5 H -0.199 1.199 6 H -0.199 1.199 7 C -0.694 4.694 8 H 0.100 0.900 9 S 0.079 5.921 10 C -0.282 4.282 11 C 0.323 3.677 12 O -0.437 6.437 13 N -0.361 5.361 14 C 0.035 3.965 15 H 0.102 0.898 16 C -0.182 4.182 17 C -0.093 4.093 18 N -0.217 5.217 19 C -0.003 4.003 20 C -0.155 4.155 21 C -0.149 4.149 22 N -0.434 5.434 23 S 0.716 5.284 24 N -0.426 5.426 25 C -0.092 4.092 26 H 0.080 0.920 27 H 0.129 0.871 28 H 0.124 0.876 29 H 0.249 0.751 30 H 0.079 0.921 31 H 0.081 0.919 32 H 0.106 0.894 33 H 0.081 0.919 34 H 0.155 0.845 35 H 0.121 0.879 36 H 0.248 0.752 37 H 0.076 0.924 38 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges 15.313 -25.088 -2.215 29.475 hybrid contribution 1.558 1.384 0.726 2.207 sum 16.872 -23.704 -1.489 29.133 Atomic orbital electron populations 1.70183 1.07960 1.28586 1.48002 1.26127 0.95972 1.03317 0.93720 0.84902 0.78584 0.76327 0.78112 1.18072 1.19935 1.19853 1.23234 0.95324 0.92028 1.58858 0.89985 1.85575 1.10343 0.99146 1.97039 1.23373 1.03660 0.94435 1.06683 1.20041 0.86254 0.86546 0.74837 1.90700 1.17249 1.85986 1.49730 1.45710 1.09964 1.04726 1.75680 1.21830 0.98186 0.80012 0.96468 0.89805 1.22783 1.01882 0.96534 0.96997 1.22940 1.00851 0.94679 0.90817 1.65163 1.29198 1.10356 1.17026 1.21354 0.81209 0.94198 1.03508 1.23748 1.01803 1.03123 0.86812 1.24301 0.88778 0.97138 1.04668 1.72458 1.32680 1.26766 1.11496 1.79227 1.07084 1.35180 1.06875 1.72349 1.22440 1.23254 1.24527 1.23571 0.95660 0.87898 1.02053 0.91956 0.87122 0.87553 0.75124 0.92120 0.91874 0.89356 0.91857 0.84514 0.87908 0.75192 0.92367 0.86615 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -56.01 13.22 21.65 0.29 -55.72 16 2 C 0.01 0.76 5.49 84.86 0.47 1.23 16 3 Si 1.00 43.62 29.55 68.60 2.03 45.65 16 4 H -0.26 -10.49 7.11 99.48 0.71 -9.78 16 5 H -0.27 -11.61 7.11 99.48 0.71 -10.91 16 6 H -0.27 -11.56 7.11 99.48 0.71 -10.85 16 7 C -0.55 -31.25 9.50 67.95 0.65 -30.61 16 8 H 0.08 4.37 7.80 -2.91 -0.02 4.34 16 9 S -0.15 -8.23 20.57 -56.49 -1.16 -9.39 16 10 C -0.13 -5.15 6.16 71.24 0.44 -4.71 16 11 C 0.54 19.67 7.84 87.66 0.69 20.36 16 12 O -0.56 -25.75 15.59 -3.04 -0.05 -25.80 16 13 N -0.71 -17.70 5.14 -436.85 -2.25 -19.95 16 14 C 0.14 3.16 3.34 46.20 0.15 3.31 16 15 H 0.08 2.30 7.71 -2.39 -0.02 2.28 16 16 C -0.14 -3.23 6.67 31.47 0.21 -3.02 16 17 C 0.04 0.61 6.45 86.44 0.56 1.17 16 18 N -0.49 -6.73 5.54 -886.80 -4.92 -11.64 16 19 C 0.13 1.14 5.99 85.56 0.51 1.65 16 20 C 0.02 0.26 4.47 42.74 0.19 0.45 16 21 C 0.05 0.49 9.82 84.87 0.83 1.33 16 22 N -0.59 -9.04 11.45 -93.94 -1.08 -10.12 16 23 S 0.67 9.28 23.71 -56.49 -1.34 7.94 16 24 N -0.58 -9.04 9.99 -82.05 -0.82 -9.86 16 25 C 0.04 0.51 5.83 86.59 0.50 1.02 16 26 H 0.27 15.43 8.31 -92.71 -0.77 14.66 16 27 H 0.11 3.91 8.14 -2.40 -0.02 3.89 16 28 H 0.11 3.82 8.14 -2.39 -0.02 3.80 16 29 H 0.41 7.75 8.53 -92.71 -0.79 6.96 16 30 H 0.06 1.47 8.05 -2.38 -0.02 1.45 16 31 H 0.06 1.66 8.14 -2.39 -0.02 1.64 16 32 H 0.09 1.46 8.14 -2.39 -0.02 1.44 16 33 H 0.06 1.14 5.93 -2.39 -0.01 1.13 16 34 H 0.14 0.39 8.13 -2.39 -0.02 0.37 16 35 H 0.10 0.89 8.08 -2.39 -0.02 0.88 16 36 H 0.23 0.91 8.06 -2.91 -0.02 0.88 16 37 H 0.06 0.76 5.02 -2.39 -0.01 0.75 16 38 H 0.12 1.25 8.14 -2.38 -0.02 1.23 16 Total: -1.00 -78.76 343.98 -3.78 -82.54 By element: Atomic # 1 Polarization: 13.85 SS G_CDS: 0.31 Total: 14.17 kcal Atomic # 6 Polarization: -13.02 SS G_CDS: 5.20 Total: -7.82 kcal Atomic # 7 Polarization: -98.52 SS G_CDS: -8.77 Total: -107.29 kcal Atomic # 8 Polarization: -25.75 SS G_CDS: -0.05 Total: -25.80 kcal Atomic # 14 Polarization: 43.62 SS G_CDS: 2.03 Total: 45.65 kcal Atomic # 16 Polarization: 1.05 SS G_CDS: -2.50 Total: -1.45 kcal Total: -78.76 -3.78 -82.54 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001713816448.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.855 kcal (2) G-P(sol) polarization free energy of solvation -78.763 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.092 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.778 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.541 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.314 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds