Wall clock time and date at job start Tue Mar 31 2020 15:44:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86792 * 120.00053 * 2 1 4 4 H 1.48500 * 109.47034 * 180.02562 * 3 2 1 5 5 H 1.48498 * 109.47517 * 300.00350 * 3 2 1 6 6 H 1.48503 * 109.47166 * 60.00343 * 3 2 1 7 7 C 1.38810 * 119.99653 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99936 * 180.02562 * 7 2 1 9 9 N 1.36937 * 120.00239 * 359.97438 * 7 2 1 10 10 C 1.46499 * 119.99897 * 179.97438 * 9 7 2 11 11 C 1.52996 * 109.47217 * 185.60817 * 10 9 7 12 12 H 1.09001 * 109.70278 * 41.84220 * 11 10 9 13 13 C 1.53198 * 109.58896 * 162.19766 * 11 10 9 14 14 C 1.53049 * 109.31043 * 174.42373 * 13 11 10 15 15 C 1.53037 * 109.53718 * 298.63312 * 14 13 11 16 16 C 1.53191 * 109.31302 * 61.37011 * 15 14 13 17 17 N 1.46929 * 108.77871 * 305.36284 * 16 15 14 18 18 C 1.34775 * 120.63123 * 233.63592 * 17 16 15 19 19 O 1.21708 * 119.99421 * 186.20863 * 18 17 16 20 20 C 1.46568 * 120.00413 * 6.19843 * 18 17 16 21 21 C 1.36664 * 125.45579 * 223.77384 * 20 18 17 22 22 C 1.37530 * 113.28846 * 179.97438 * 21 20 18 23 23 Cl 1.73609 * 122.46067 * 179.97438 * 22 21 20 24 24 C 1.33868 * 115.08112 * 359.97438 * 22 21 20 25 25 S 1.70620 * 110.95722 * 359.72721 * 24 22 21 26 26 H 0.97000 * 119.99864 * 359.97438 * 1 2 3 27 27 H 0.96993 * 120.00021 * 0.02562 * 9 7 2 28 28 H 1.09001 * 109.47177 * 65.60878 * 10 9 7 29 29 H 1.08998 * 109.47585 * 305.60982 * 10 9 7 30 30 H 1.08998 * 109.49320 * 54.47314 * 13 11 10 31 31 H 1.08995 * 109.52464 * 294.39283 * 13 11 10 32 32 H 1.09001 * 109.45544 * 178.61695 * 14 13 11 33 33 H 1.08996 * 109.44615 * 58.64777 * 14 13 11 34 34 H 1.09002 * 109.50309 * 301.41775 * 15 14 13 35 35 H 1.08998 * 109.49841 * 181.31858 * 15 14 13 36 36 H 1.09003 * 109.58726 * 65.14587 * 16 15 14 37 37 H 1.08997 * 109.59121 * 185.57094 * 16 15 14 38 38 H 1.08002 * 123.35939 * 359.96114 * 21 20 18 39 39 H 1.07997 * 124.52491 * 179.97438 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3463 -0.0006 5 1 1.8914 2.3965 -1.2124 6 1 1.8915 2.3963 1.2126 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0001 9 7 1.3255 -2.3881 -0.0005 10 6 2.0580 -3.6568 -0.0017 11 6 1.0696 -4.8162 -0.1424 12 1 0.3096 -4.5635 -0.8817 13 6 1.8175 -6.0777 -0.5852 14 6 0.8505 -7.2640 -0.5896 15 6 0.3140 -7.4922 0.8253 16 6 -0.4509 -6.2468 1.2841 17 7 0.4284 -5.0769 1.1536 18 6 0.6433 -4.2589 2.2030 19 8 1.2809 -3.2330 2.0541 20 6 0.1089 -4.6047 3.5233 21 6 -0.5125 -3.7387 4.3786 22 6 -0.9166 -4.3301 5.5527 23 17 -1.7296 -3.4490 6.8083 24 6 -0.6369 -5.6352 5.6562 25 16 0.1565 -6.2022 4.2562 26 1 -0.4850 0.8401 0.0004 27 1 0.3555 -2.3881 -0.0005 28 1 2.6079 -3.7597 0.9338 29 1 2.7572 -3.6720 -0.8377 30 1 2.6354 -6.2776 0.1070 31 1 2.2176 -5.9308 -1.5884 32 1 1.3743 -8.1581 -0.9280 33 1 0.0201 -7.0528 -1.2632 34 1 1.1461 -7.6788 1.5043 35 1 -0.3564 -8.3517 0.8260 36 1 -1.3349 -6.1107 0.6611 37 1 -0.7501 -6.3647 2.3256 38 1 -0.6703 -2.6939 4.1551 39 1 -0.8843 -6.2483 6.5101 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001731548695.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:44:30 Heat of formation + Delta-G solvation = 42.490168 kcal Electronic energy + Delta-G solvation = -24169.372414 eV Core-core repulsion = 20652.441560 eV Total energy + Delta-G solvation = -3516.930854 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 328.075 amu Computer time = 1.25 seconds Orbital eigenvalues (eV) -40.23533 -38.21813 -36.94402 -35.97728 -34.49327 -32.73158 -32.03877 -29.82825 -29.61165 -26.34206 -25.00196 -24.31669 -22.76843 -21.99514 -20.75126 -19.80869 -19.15459 -17.83114 -16.79528 -16.27175 -15.77924 -15.59862 -14.88177 -14.53161 -14.48430 -14.03313 -13.82773 -13.57272 -13.35481 -13.23885 -12.98436 -12.75496 -12.57408 -12.31638 -12.16995 -11.72284 -11.42289 -11.36548 -11.07264 -10.97153 -10.90293 -10.74463 -10.71464 -10.60701 -10.32267 -9.85255 -9.51950 -9.01822 -8.74376 -8.59424 -8.40279 -8.13241 -6.56842 -5.55531 -2.75188 0.48973 1.16833 1.49182 2.27160 2.46456 3.21202 3.50590 3.56253 3.60716 3.62910 4.59720 4.72402 4.75830 4.84081 4.86239 5.00884 5.14117 5.17757 5.35464 5.43401 5.58119 5.67921 5.76119 5.79167 5.80937 5.85089 5.94700 6.01347 6.04151 6.11523 6.13053 6.31709 6.50894 6.63156 6.87081 7.23689 7.75488 7.88229 8.62441 8.69229 9.74263 10.34386 10.69044 11.68353 Molecular weight = 328.08amu Principal moments of inertia in cm(-1) A = 0.009334 B = 0.005325 C = 0.003565 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2999.030308 B = 5256.628961 C = 7852.478109 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C -0.022 4.022 3 Si 0.901 3.099 4 H -0.283 1.283 5 H -0.295 1.295 6 H -0.295 1.295 7 C -0.207 4.207 8 H 0.066 0.934 9 N -0.700 5.700 10 C 0.155 3.845 11 C 0.144 3.856 12 H 0.073 0.927 13 C -0.127 4.127 14 C -0.118 4.118 15 C -0.134 4.134 16 C 0.098 3.902 17 N -0.608 5.608 18 C 0.549 3.451 19 O -0.426 6.426 20 C -0.223 4.223 21 C -0.075 4.075 22 C -0.046 4.046 23 Cl -0.053 7.053 24 C -0.258 4.258 25 S 0.234 5.766 26 H 0.250 0.750 27 H 0.380 0.620 28 H 0.042 0.958 29 H 0.019 0.981 30 H 0.066 0.934 31 H 0.076 0.924 32 H 0.063 0.937 33 H 0.064 0.936 34 H 0.065 0.935 35 H 0.073 0.927 36 H 0.070 0.930 37 H 0.082 0.918 38 H 0.163 0.837 39 H 0.174 0.826 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.855 -20.588 7.773 22.191 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.587 5.587 2 C -0.216 4.216 3 Si 0.734 3.266 4 H -0.208 1.208 5 H -0.223 1.223 6 H -0.222 1.222 7 C -0.339 4.339 8 H 0.084 0.916 9 N -0.342 5.342 10 C 0.028 3.972 11 C 0.041 3.959 12 H 0.091 0.909 13 C -0.166 4.166 14 C -0.156 4.156 15 C -0.172 4.172 16 C -0.026 4.026 17 N -0.345 5.345 18 C 0.332 3.668 19 O -0.295 6.295 20 C -0.344 4.344 21 C -0.106 4.106 22 C -0.086 4.086 23 Cl -0.025 7.025 24 C -0.396 4.396 25 S 0.499 5.501 26 H 0.060 0.940 27 H 0.214 0.786 28 H 0.059 0.941 29 H 0.036 0.964 30 H 0.084 0.916 31 H 0.094 0.906 32 H 0.082 0.918 33 H 0.083 0.917 34 H 0.084 0.916 35 H 0.091 0.909 36 H 0.088 0.912 37 H 0.099 0.901 38 H 0.180 0.820 39 H 0.191 0.809 Dipole moment (debyes) X Y Z Total from point charges -1.841 -21.180 7.374 22.503 hybrid contribution -0.738 2.350 0.916 2.628 sum -2.579 -18.830 8.290 20.735 Atomic orbital electron populations 1.69670 1.04986 1.24882 1.59166 1.24622 0.95438 0.97260 1.04307 0.86166 0.78738 0.84748 0.76950 1.20801 1.22272 1.22209 1.19215 0.90787 0.84267 1.39679 0.91612 1.42201 1.05348 0.99571 1.87079 1.20977 0.93012 0.85008 0.98236 1.21552 0.95562 0.95319 0.83450 0.90861 1.21931 0.98303 0.94345 1.02046 1.21512 0.99341 0.98229 0.96512 1.21933 1.00406 0.97280 0.97598 1.21961 0.93212 0.85260 1.02176 1.47771 1.48476 1.27199 1.11045 1.17031 0.83275 0.84463 0.81985 1.91307 1.35161 1.21270 1.81810 1.24909 1.10527 0.97351 1.01644 1.20521 0.97434 1.01862 0.90776 1.19549 1.04202 0.92137 0.92742 1.98363 1.77619 1.75746 1.50763 1.25196 1.09222 0.98759 1.06450 1.83094 1.53791 1.08331 1.04844 0.94036 0.78645 0.94084 0.96360 0.91555 0.90575 0.91838 0.91696 0.91585 0.90853 0.91213 0.90053 0.82000 0.80887 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 28. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -29.73 13.06 55.49 0.72 -29.00 16 2 C -0.02 -0.66 5.50 -17.43 -0.10 -0.75 16 3 Si 0.90 23.78 29.55 -169.99 -5.02 18.76 16 4 H -0.28 -7.23 7.11 56.52 0.40 -6.83 16 5 H -0.30 -7.74 7.11 56.52 0.40 -7.34 16 6 H -0.29 -7.86 7.11 56.52 0.40 -7.46 16 7 C -0.21 -6.14 9.87 -15.06 -0.15 -6.29 16 8 H 0.07 1.92 7.83 -52.49 -0.41 1.51 16 9 N -0.70 -18.63 3.41 -59.91 -0.20 -18.84 16 10 C 0.16 3.30 4.93 -4.04 -0.02 3.28 16 11 C 0.14 2.36 2.90 -67.60 -0.20 2.16 16 12 H 0.07 1.27 8.12 -51.93 -0.42 0.85 16 13 C -0.13 -1.56 5.30 -26.60 -0.14 -1.70 16 14 C -0.12 -1.13 5.88 -26.69 -0.16 -1.28 16 15 C -0.13 -1.20 6.08 -26.61 -0.16 -1.36 16 16 C 0.10 1.11 6.03 -3.71 -0.02 1.09 16 17 N -0.61 -9.43 2.97 -166.78 -0.50 -9.93 16 18 C 0.55 10.15 7.26 -12.90 -0.09 10.06 16 19 O -0.43 -10.14 11.25 5.18 0.06 -10.08 16 20 C -0.22 -3.42 5.42 -36.79 -0.20 -3.62 16 21 C -0.07 -1.16 10.11 -40.41 -0.41 -1.57 16 22 C -0.05 -0.60 6.25 -41.37 -0.26 -0.85 16 23 Cl -0.05 -0.66 29.10 -51.86 -1.51 -2.17 16 24 C -0.26 -2.75 10.78 29.20 0.31 -2.44 16 25 S 0.23 2.46 20.10 -107.50 -2.16 0.30 16 26 H 0.25 7.68 8.31 -40.82 -0.34 7.35 16 27 H 0.38 10.80 7.55 -40.82 -0.31 10.49 16 28 H 0.04 0.95 5.95 -51.93 -0.31 0.64 16 29 H 0.02 0.39 8.02 -51.93 -0.42 -0.02 16 30 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 31 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 32 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 33 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 34 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 35 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 36 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 37 H 0.08 0.86 4.01 -31.99 -0.13 0.73 16 38 H 0.16 2.81 8.06 -52.49 -0.42 2.39 16 39 H 0.17 1.39 8.06 -52.49 -0.42 0.96 16 LS Contribution 339.99 15.07 5.12 5.12 Total: -1.00 -34.11 339.99 -10.01 -44.12 By element: Atomic # 1 Polarization: 9.93 SS G_CDS: -4.93 Total: 4.99 kcal Atomic # 6 Polarization: -1.68 SS G_CDS: -1.59 Total: -3.27 kcal Atomic # 7 Polarization: -57.79 SS G_CDS: 0.02 Total: -57.77 kcal Atomic # 8 Polarization: -10.14 SS G_CDS: 0.06 Total: -10.08 kcal Atomic # 14 Polarization: 23.78 SS G_CDS: -5.02 Total: 18.76 kcal Atomic # 16 Polarization: 2.46 SS G_CDS: -2.16 Total: 0.30 kcal Atomic # 17 Polarization: -0.66 SS G_CDS: -1.51 Total: -2.17 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -34.11 -10.01 -44.12 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001731548695.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.606 kcal (2) G-P(sol) polarization free energy of solvation -34.105 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.501 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.011 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.116 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.490 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.25 seconds