Wall clock time and date at job start Tue Mar 31 2020 15:44:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86792 * 120.00053 * 2 1 4 4 H 1.48500 * 109.47034 * 180.02562 * 3 2 1 5 5 H 1.48498 * 109.47517 * 300.00350 * 3 2 1 6 6 H 1.48503 * 109.47166 * 60.00343 * 3 2 1 7 7 C 1.38810 * 119.99653 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99936 * 180.02562 * 7 2 1 9 9 N 1.36937 * 120.00239 * 359.97438 * 7 2 1 10 10 C 1.46499 * 119.99897 * 179.97438 * 9 7 2 11 11 C 1.52996 * 109.47217 * 185.60817 * 10 9 7 12 12 H 1.09001 * 109.70278 * 41.84220 * 11 10 9 13 13 C 1.53198 * 109.58896 * 162.19766 * 11 10 9 14 14 C 1.53049 * 109.31043 * 174.42373 * 13 11 10 15 15 C 1.53037 * 109.53718 * 298.63312 * 14 13 11 16 16 C 1.53191 * 109.31302 * 61.37011 * 15 14 13 17 17 N 1.46929 * 108.77871 * 305.36284 * 16 15 14 18 18 C 1.34775 * 120.63123 * 233.63592 * 17 16 15 19 19 O 1.21708 * 119.99421 * 186.20863 * 18 17 16 20 20 C 1.46568 * 120.00413 * 6.19843 * 18 17 16 21 21 C 1.36664 * 125.45579 * 223.77384 * 20 18 17 22 22 C 1.37530 * 113.28846 * 179.97438 * 21 20 18 23 23 Cl 1.73609 * 122.46067 * 179.97438 * 22 21 20 24 24 C 1.33868 * 115.08112 * 359.97438 * 22 21 20 25 25 S 1.70620 * 110.95722 * 359.72721 * 24 22 21 26 26 H 0.97000 * 119.99864 * 359.97438 * 1 2 3 27 27 H 0.96993 * 120.00021 * 0.02562 * 9 7 2 28 28 H 1.09001 * 109.47177 * 65.60878 * 10 9 7 29 29 H 1.08998 * 109.47585 * 305.60982 * 10 9 7 30 30 H 1.08998 * 109.49320 * 54.47314 * 13 11 10 31 31 H 1.08995 * 109.52464 * 294.39283 * 13 11 10 32 32 H 1.09001 * 109.45544 * 178.61695 * 14 13 11 33 33 H 1.08996 * 109.44615 * 58.64777 * 14 13 11 34 34 H 1.09002 * 109.50309 * 301.41775 * 15 14 13 35 35 H 1.08998 * 109.49841 * 181.31858 * 15 14 13 36 36 H 1.09003 * 109.58726 * 65.14587 * 16 15 14 37 37 H 1.08997 * 109.59121 * 185.57094 * 16 15 14 38 38 H 1.08002 * 123.35939 * 359.96114 * 21 20 18 39 39 H 1.07997 * 124.52491 * 179.97438 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3463 -0.0006 5 1 1.8914 2.3965 -1.2124 6 1 1.8915 2.3963 1.2126 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0001 9 7 1.3255 -2.3881 -0.0005 10 6 2.0580 -3.6568 -0.0017 11 6 1.0696 -4.8162 -0.1424 12 1 0.3096 -4.5635 -0.8817 13 6 1.8175 -6.0777 -0.5852 14 6 0.8505 -7.2640 -0.5896 15 6 0.3140 -7.4922 0.8253 16 6 -0.4509 -6.2468 1.2841 17 7 0.4284 -5.0769 1.1536 18 6 0.6433 -4.2589 2.2030 19 8 1.2809 -3.2330 2.0541 20 6 0.1089 -4.6047 3.5233 21 6 -0.5125 -3.7387 4.3786 22 6 -0.9166 -4.3301 5.5527 23 17 -1.7296 -3.4490 6.8083 24 6 -0.6369 -5.6352 5.6562 25 16 0.1565 -6.2022 4.2562 26 1 -0.4850 0.8401 0.0004 27 1 0.3555 -2.3881 -0.0005 28 1 2.6079 -3.7597 0.9338 29 1 2.7572 -3.6720 -0.8377 30 1 2.6354 -6.2776 0.1070 31 1 2.2176 -5.9308 -1.5884 32 1 1.3743 -8.1581 -0.9280 33 1 0.0201 -7.0528 -1.2632 34 1 1.1461 -7.6788 1.5043 35 1 -0.3564 -8.3517 0.8260 36 1 -1.3349 -6.1107 0.6611 37 1 -0.7501 -6.3647 2.3256 38 1 -0.6703 -2.6939 4.1551 39 1 -0.8843 -6.2483 6.5101 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001731548695.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:44:29 Heat of formation + Delta-G solvation = 20.364803 kcal Electronic energy + Delta-G solvation = -24170.331842 eV Core-core repulsion = 20652.441560 eV Total energy + Delta-G solvation = -3517.890282 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 328.075 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.55130 -39.27763 -38.14755 -37.05009 -36.33741 -33.99663 -33.64886 -31.57955 -30.68427 -27.79207 -26.41812 -25.52747 -24.38572 -23.31804 -21.98461 -20.88238 -20.26992 -19.38098 -18.54590 -17.35197 -17.08106 -16.86455 -16.62420 -15.91786 -15.50496 -15.28016 -15.17891 -14.98607 -14.84305 -14.46129 -14.27556 -13.98385 -13.89322 -13.61762 -13.51778 -13.15483 -12.84251 -12.75294 -12.44072 -12.39689 -12.11286 -12.05029 -11.92041 -11.85975 -11.70716 -11.51259 -11.35584 -10.94315 -10.18133 -10.00791 -9.51541 -9.31616 -8.72319 -7.86151 -5.06360 -0.56870 0.19248 0.44302 1.15374 1.41815 1.44528 1.46047 1.53828 1.94546 2.20908 2.59935 3.45645 3.50253 3.82297 3.84861 3.93783 4.01099 4.10246 4.15595 4.32750 4.38193 4.46937 4.59842 4.61708 4.71494 4.84716 4.88028 4.92277 5.01408 5.06338 5.14158 5.15500 5.27226 5.31473 5.50098 5.53310 5.77804 6.35503 6.47222 7.31900 7.42078 8.22174 8.44591 9.39017 Molecular weight = 328.08amu Principal moments of inertia in cm(-1) A = 0.009334 B = 0.005325 C = 0.003565 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2999.030308 B = 5256.628961 C = 7852.478109 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.975 5.975 2 C -0.086 4.086 3 Si 0.967 3.033 4 H -0.270 1.270 5 H -0.290 1.290 6 H -0.300 1.300 7 C -0.210 4.210 8 H 0.063 0.937 9 N -0.709 5.709 10 C 0.157 3.843 11 C 0.148 3.852 12 H 0.061 0.939 13 C -0.119 4.119 14 C -0.114 4.114 15 C -0.128 4.128 16 C 0.089 3.911 17 N -0.603 5.603 18 C 0.548 3.452 19 O -0.500 6.500 20 C -0.269 4.269 21 C -0.085 4.085 22 C -0.069 4.069 23 Cl -0.053 7.053 24 C -0.235 4.235 25 S 0.340 5.660 26 H 0.245 0.755 27 H 0.366 0.634 28 H 0.024 0.976 29 H 0.019 0.981 30 H 0.066 0.934 31 H 0.082 0.918 32 H 0.090 0.910 33 H 0.067 0.933 34 H 0.071 0.929 35 H 0.109 0.891 36 H 0.075 0.925 37 H 0.091 0.909 38 H 0.125 0.875 39 H 0.212 0.788 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.773 -24.756 8.667 26.376 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.628 5.628 2 C -0.277 4.277 3 Si 0.797 3.203 4 H -0.194 1.194 5 H -0.217 1.217 6 H -0.228 1.228 7 C -0.343 4.343 8 H 0.081 0.919 9 N -0.349 5.349 10 C 0.031 3.969 11 C 0.045 3.955 12 H 0.079 0.921 13 C -0.158 4.158 14 C -0.151 4.151 15 C -0.166 4.166 16 C -0.033 4.033 17 N -0.339 5.339 18 C 0.334 3.666 19 O -0.375 6.375 20 C -0.389 4.389 21 C -0.118 4.118 22 C -0.109 4.109 23 Cl -0.024 7.024 24 C -0.373 4.373 25 S 0.606 5.394 26 H 0.053 0.947 27 H 0.197 0.803 28 H 0.042 0.958 29 H 0.036 0.964 30 H 0.085 0.915 31 H 0.101 0.899 32 H 0.109 0.891 33 H 0.085 0.915 34 H 0.090 0.910 35 H 0.127 0.873 36 H 0.093 0.907 37 H 0.108 0.892 38 H 0.143 0.857 39 H 0.229 0.771 Dipole moment (debyes) X Y Z Total from point charges -1.746 -25.447 8.257 26.810 hybrid contribution -0.787 3.426 0.754 3.596 sum -2.534 -22.021 9.011 23.927 Atomic orbital electron populations 1.69835 1.06439 1.25113 1.61419 1.25399 0.96360 1.00563 1.05384 0.85133 0.78107 0.80503 0.76515 1.19434 1.21745 1.22782 1.19536 0.90845 0.85795 1.38136 0.91895 1.42279 1.04674 1.00665 1.87321 1.21022 0.93935 0.84953 0.96999 1.21434 0.94592 0.95672 0.83798 0.92104 1.21893 0.98544 0.93197 1.02149 1.21520 0.98857 0.97587 0.97181 1.21967 1.00925 0.96654 0.97067 1.22324 0.93128 0.84724 1.03140 1.47921 1.48196 1.27825 1.09919 1.17555 0.81810 0.83715 0.83552 1.91261 1.38741 1.24145 1.83320 1.24674 1.12215 1.01259 1.00785 1.20389 0.98426 1.00608 0.92341 1.19396 1.06081 0.93142 0.92310 1.98358 1.77666 1.76071 1.50327 1.25743 1.06247 0.97919 1.07419 1.82631 1.51123 1.03092 1.02550 0.94665 0.80295 0.95808 0.96357 0.91495 0.89917 0.89115 0.91461 0.91026 0.87285 0.90656 0.89154 0.85668 0.77124 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -65.07 13.06 21.65 0.28 -64.79 16 2 C -0.09 -5.46 5.50 84.86 0.47 -4.99 16 3 Si 0.97 50.92 29.55 68.60 2.03 52.95 16 4 H -0.27 -13.43 7.11 99.48 0.71 -12.73 16 5 H -0.29 -14.91 7.11 99.48 0.71 -14.21 16 6 H -0.30 -15.92 7.11 99.48 0.71 -15.21 16 7 C -0.21 -13.07 9.87 84.03 0.83 -12.24 16 8 H 0.06 3.84 7.83 -2.91 -0.02 3.82 16 9 N -0.71 -40.10 3.41 -343.47 -1.17 -41.28 16 10 C 0.16 7.04 4.93 86.38 0.43 7.47 16 11 C 0.15 4.92 2.90 44.97 0.13 5.05 16 12 H 0.06 2.17 8.12 -2.39 -0.02 2.15 16 13 C -0.12 -2.70 5.30 30.68 0.16 -2.54 16 14 C -0.11 -1.73 5.88 30.62 0.18 -1.54 16 15 C -0.13 -1.71 6.08 30.67 0.19 -1.52 16 16 C 0.09 1.80 6.03 86.36 0.52 2.32 16 17 N -0.60 -18.72 2.97 -799.79 -2.38 -21.10 16 18 C 0.55 21.13 7.26 86.42 0.63 21.76 16 19 O -0.50 -25.58 11.25 -4.37 -0.05 -25.63 16 20 C -0.27 -8.27 5.42 24.08 0.13 -8.14 16 21 C -0.08 -2.76 10.11 21.73 0.22 -2.54 16 22 C -0.07 -1.75 6.25 21.11 0.13 -1.62 16 23 Cl -0.05 -1.28 29.10 -2.72 -0.08 -1.36 16 24 C -0.24 -4.15 10.78 66.83 0.72 -3.43 16 25 S 0.34 5.93 20.10 -56.49 -1.14 4.80 16 26 H 0.24 15.80 8.31 -92.71 -0.77 15.03 16 27 H 0.37 22.25 7.55 -92.71 -0.70 21.55 16 28 H 0.02 1.18 5.95 -2.43 -0.01 1.17 16 29 H 0.02 0.82 8.02 -2.39 -0.02 0.80 16 30 H 0.07 1.52 8.14 -2.39 -0.02 1.50 16 31 H 0.08 1.77 8.14 -2.39 -0.02 1.75 16 32 H 0.09 0.99 8.14 -2.39 -0.02 0.97 16 33 H 0.07 1.03 8.14 -2.39 -0.02 1.01 16 34 H 0.07 0.93 8.14 -2.39 -0.02 0.91 16 35 H 0.11 0.80 8.14 -2.39 -0.02 0.78 16 36 H 0.08 1.48 8.14 -2.39 -0.02 1.46 16 37 H 0.09 1.61 4.01 -15.07 -0.06 1.55 16 38 H 0.13 4.89 8.06 -2.91 -0.02 4.86 16 39 H 0.21 2.17 8.06 -2.91 -0.02 2.15 16 Total: -1.00 -81.60 339.99 2.56 -79.04 By element: Atomic # 1 Polarization: 19.00 SS G_CDS: 0.33 Total: 19.33 kcal Atomic # 6 Polarization: -6.70 SS G_CDS: 4.73 Total: -1.96 kcal Atomic # 7 Polarization: -123.89 SS G_CDS: -3.27 Total: -127.16 kcal Atomic # 8 Polarization: -25.58 SS G_CDS: -0.05 Total: -25.63 kcal Atomic # 14 Polarization: 50.92 SS G_CDS: 2.03 Total: 52.95 kcal Atomic # 16 Polarization: 5.93 SS G_CDS: -1.14 Total: 4.80 kcal Atomic # 17 Polarization: -1.28 SS G_CDS: -0.08 Total: -1.36 kcal Total: -81.60 2.56 -79.04 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001731548695.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.403 kcal (2) G-P(sol) polarization free energy of solvation -81.598 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.806 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.559 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.038 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.365 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds