Wall clock time and date at job start Tue Mar 31 2020 15:48:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86797 * 120.00114 * 2 1 4 4 H 1.48505 * 109.46952 * 180.02562 * 3 2 1 5 5 H 1.48503 * 109.47086 * 300.00170 * 3 2 1 6 6 H 1.48491 * 109.47258 * 60.00035 * 3 2 1 7 7 C 1.38814 * 119.99832 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00168 * 179.97438 * 7 2 1 9 9 N 1.36944 * 120.00118 * 359.97438 * 7 2 1 10 10 C 1.46493 * 119.99734 * 179.97438 * 9 7 2 11 11 C 1.53004 * 109.46783 * 180.02562 * 10 9 7 12 12 H 1.09002 * 109.52391 * 304.92162 * 11 10 9 13 13 C 1.53353 * 109.68580 * 184.75513 * 11 10 9 14 14 C 1.53040 * 109.60914 * 178.75026 * 13 11 10 15 15 C 1.53184 * 109.31141 * 61.37011 * 14 13 11 16 16 N 1.46924 * 108.78047 * 305.36299 * 15 14 13 17 17 C 1.34771 * 120.63599 * 233.58779 * 16 15 14 18 18 O 1.21720 * 120.00379 * 174.36938 * 17 16 15 19 19 C 1.46439 * 119.99803 * 354.37044 * 17 16 15 20 20 S 1.75827 * 125.46462 * 319.30162 * 19 17 16 21 21 C 1.70604 * 91.58765 * 179.91192 * 20 19 17 22 22 C 1.33767 * 110.99862 * 0.35943 * 21 20 19 23 23 C 1.36797 * 125.46269 * 139.60723 * 19 17 16 24 24 Cl 1.73597 * 123.37714 * 359.97438 * 23 19 17 25 25 C 1.46925 * 118.73289 * 53.61274 * 16 15 14 26 26 H 0.96996 * 119.99693 * 359.97438 * 1 2 3 27 27 H 0.96999 * 119.99584 * 0.02562 * 9 7 2 28 28 H 1.09003 * 109.47353 * 60.00828 * 10 9 7 29 29 H 1.09002 * 109.47653 * 300.00367 * 10 9 7 30 30 H 1.09007 * 109.42000 * 58.70738 * 13 11 10 31 31 H 1.09006 * 109.42020 * 298.78647 * 13 11 10 32 32 H 1.09004 * 109.49475 * 301.41755 * 14 13 11 33 33 H 1.08998 * 109.52048 * 181.34174 * 14 13 11 34 34 H 1.09003 * 109.58436 * 185.57879 * 15 14 13 35 35 H 1.09003 * 109.70540 * 65.22593 * 15 14 13 36 36 H 1.08001 * 124.49841 * 180.02562 * 21 20 19 37 37 H 1.08005 * 122.45308 * 179.70413 * 22 21 20 38 38 H 1.09002 * 109.59080 * 66.17423 * 25 16 15 39 39 H 1.09004 * 109.58790 * 186.46385 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7103 1.3463 -0.0006 5 1 1.8915 2.3964 -1.2125 6 1 1.8915 2.3964 1.2124 7 6 2.0102 -1.2022 -0.0005 8 1 3.0903 -1.2022 -0.0010 9 7 1.3255 -2.3881 -0.0005 10 6 2.0580 -3.6568 -0.0017 11 6 1.0637 -4.8197 -0.0021 12 1 0.3803 -4.7150 0.8406 13 6 1.8218 -6.1475 0.1164 14 6 0.8240 -7.3076 0.1472 15 6 0.0248 -7.3232 -1.1595 16 7 -0.5905 -6.0031 -1.3535 17 6 -1.9161 -5.8881 -1.5672 18 8 -2.4301 -4.7862 -1.6243 19 6 -2.7383 -7.0888 -1.7309 20 16 -2.2793 -8.5237 -2.6374 21 6 -3.7586 -9.2887 -2.2672 22 6 -4.5336 -8.4965 -1.5180 23 6 -3.9890 -7.2716 -1.2078 24 17 -4.8068 -6.0781 -0.2484 25 6 0.2671 -4.8109 -1.3105 26 1 -0.4849 0.8400 0.0004 27 1 0.3555 -2.3881 -0.0005 28 1 2.6853 -3.7150 0.8879 29 1 2.6841 -3.7142 -0.8921 30 1 2.4089 -6.1490 1.0349 31 1 2.4866 -6.2630 -0.7397 32 1 0.1431 -7.1794 0.9887 33 1 1.3630 -8.2487 0.2554 34 1 -0.7535 -8.0842 -1.1028 35 1 0.6901 -7.5425 -1.9946 36 1 -4.0350 -10.2787 -2.5986 37 1 -5.5151 -8.7964 -1.1814 38 1 0.9542 -4.8243 -2.1566 39 1 -0.3510 -3.9143 -1.3559 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001752798524.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:48:05 Heat of formation + Delta-G solvation = 5.754900 kcal Electronic energy + Delta-G solvation = -23458.761168 eV Core-core repulsion = 19940.237353 eV Total energy + Delta-G solvation = -3518.523815 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 328.075 amu Computer time = 1.88 seconds Orbital eigenvalues (eV) -40.21145 -38.41610 -37.28196 -36.20856 -34.91917 -32.92965 -31.71244 -30.43615 -29.47701 -26.12855 -25.53627 -24.44672 -23.15570 -21.58932 -21.05502 -19.83955 -19.38247 -18.11745 -16.99035 -16.50140 -16.33148 -15.49880 -15.06357 -14.67221 -14.60459 -14.05309 -13.84380 -13.78871 -13.57746 -13.44394 -13.13266 -12.96540 -12.68902 -12.48192 -12.33315 -11.81833 -11.60442 -11.31116 -11.09154 -10.99406 -10.95015 -10.81763 -10.63932 -10.37122 -10.27647 -9.96909 -9.84377 -9.57981 -9.13539 -8.82330 -8.71029 -8.51903 -6.84884 -5.67505 -2.97523 0.16719 0.83764 1.39514 1.95769 2.25815 2.83869 3.15691 3.48593 3.53308 3.56326 4.32027 4.61233 4.66030 4.71270 4.80278 4.88644 4.98141 5.20462 5.29498 5.31291 5.41460 5.56805 5.63719 5.65507 5.68192 5.80265 5.84814 5.96517 6.10434 6.14247 6.22348 6.40704 6.55055 6.62952 6.79488 6.90713 7.40828 7.76964 8.17996 8.49974 9.61026 10.19115 10.53234 11.54704 Molecular weight = 328.08amu Principal moments of inertia in cm(-1) A = 0.016705 B = 0.003357 C = 0.002955 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1675.693757 B = 8339.237245 C = 9472.262509 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.928 5.928 2 C -0.013 4.013 3 Si 0.905 3.095 4 H -0.281 1.281 5 H -0.292 1.292 6 H -0.292 1.292 7 C -0.242 4.242 8 H 0.070 0.930 9 N -0.733 5.733 10 C 0.162 3.838 11 C -0.107 4.107 12 H 0.075 0.925 13 C -0.112 4.112 14 C -0.131 4.131 15 C 0.095 3.905 16 N -0.604 5.604 17 C 0.581 3.419 18 O -0.497 6.497 19 C -0.252 4.252 20 S 0.252 5.748 21 C -0.240 4.240 22 C -0.138 4.138 23 C 0.006 3.994 24 Cl -0.018 7.018 25 C 0.122 3.878 26 H 0.255 0.745 27 H 0.385 0.615 28 H 0.022 0.978 29 H 0.020 0.980 30 H 0.067 0.933 31 H 0.065 0.935 32 H 0.067 0.933 33 H 0.075 0.925 34 H 0.081 0.919 35 H 0.073 0.927 36 H 0.176 0.824 37 H 0.153 0.847 38 H 0.069 0.931 39 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.199 -26.271 -4.257 27.116 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.209 4.209 3 Si 0.737 3.263 4 H -0.206 1.206 5 H -0.219 1.219 6 H -0.219 1.219 7 C -0.373 4.373 8 H 0.088 0.912 9 N -0.378 5.378 10 C 0.033 3.967 11 C -0.127 4.127 12 H 0.093 0.907 13 C -0.150 4.150 14 C -0.169 4.169 15 C -0.029 4.029 16 N -0.338 5.338 17 C 0.366 3.634 18 O -0.372 6.372 19 C -0.374 4.374 20 S 0.518 5.482 21 C -0.377 4.377 22 C -0.169 4.169 23 C -0.036 4.036 24 Cl 0.011 6.989 25 C 0.001 3.999 26 H 0.065 0.935 27 H 0.220 0.780 28 H 0.040 0.960 29 H 0.037 0.963 30 H 0.086 0.914 31 H 0.083 0.917 32 H 0.086 0.914 33 H 0.093 0.907 34 H 0.099 0.901 35 H 0.091 0.909 36 H 0.194 0.806 37 H 0.171 0.829 38 H 0.087 0.913 39 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -4.159 -25.868 -5.055 26.683 hybrid contribution -1.325 1.235 0.934 2.038 sum -5.483 -24.633 -4.120 25.570 Atomic orbital electron populations 1.69690 1.05037 1.25500 1.57408 1.24764 0.95488 0.97661 1.03017 0.86144 0.78719 0.84316 0.77158 1.20610 1.21894 1.21928 1.19241 0.90973 0.84164 1.42917 0.91194 1.42431 1.05990 0.99940 1.89465 1.20615 0.92914 0.85134 0.98004 1.21751 0.97989 0.95123 0.97836 0.90671 1.21582 0.97415 0.93650 1.02403 1.21879 0.98544 0.99293 0.97182 1.22033 0.97686 0.84548 0.98597 1.48019 1.06436 1.08374 1.70980 1.16836 0.81545 0.87045 0.77936 1.90953 1.71441 1.25784 1.49051 1.24636 0.99921 1.01692 1.11132 1.83258 1.13810 1.03767 1.47370 1.25277 1.00742 1.05796 1.05916 1.19742 1.02661 0.92312 1.02179 1.20327 0.92089 0.92666 0.98516 1.98424 1.77321 1.54728 1.68442 1.21785 0.93108 0.87602 0.97416 0.93537 0.78035 0.96037 0.96250 0.91391 0.91674 0.91398 0.90688 0.90082 0.90901 0.80647 0.82933 0.91300 0.87595 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 39. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -29.28 13.06 55.49 0.72 -28.55 16 2 C -0.01 -0.39 5.50 -17.43 -0.10 -0.48 16 3 Si 0.91 23.03 29.55 -169.99 -5.02 18.00 16 4 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 5 H -0.29 -7.46 7.11 56.52 0.40 -7.05 16 6 H -0.29 -7.46 7.11 56.52 0.40 -7.06 16 7 C -0.24 -6.95 9.99 -15.06 -0.15 -7.10 16 8 H 0.07 1.94 7.83 -52.49 -0.41 1.53 16 9 N -0.73 -19.13 5.38 -59.91 -0.32 -19.45 16 10 C 0.16 3.25 5.67 -4.04 -0.02 3.23 16 11 C -0.11 -1.76 2.39 -90.34 -0.22 -1.98 16 12 H 0.07 1.37 8.14 -51.93 -0.42 0.95 16 13 C -0.11 -1.35 5.19 -26.53 -0.14 -1.49 16 14 C -0.13 -1.30 6.08 -26.62 -0.16 -1.46 16 15 C 0.10 0.98 5.62 -3.72 -0.02 0.96 16 16 N -0.60 -8.78 2.97 -174.40 -0.52 -9.30 16 17 C 0.58 9.56 7.33 -12.96 -0.10 9.46 16 18 O -0.50 -10.44 15.62 5.17 0.08 -10.36 16 19 C -0.25 -3.25 5.40 -36.80 -0.20 -3.45 16 20 S 0.25 2.05 20.04 -107.50 -2.15 -0.10 16 21 C -0.24 -1.68 10.92 29.16 0.32 -1.36 16 22 C -0.14 -1.23 10.06 -41.38 -0.42 -1.65 16 23 C 0.01 0.07 6.38 -40.34 -0.26 -0.19 16 24 Cl -0.02 -0.26 28.05 -51.86 -1.45 -1.71 16 25 C 0.12 2.07 5.52 -3.71 -0.02 2.05 16 26 H 0.25 7.77 8.31 -40.82 -0.34 7.43 16 27 H 0.39 10.80 6.89 -40.82 -0.28 10.52 16 28 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 29 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 30 H 0.07 0.79 8.14 -51.93 -0.42 0.36 16 31 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 32 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 33 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 34 H 0.08 0.72 4.52 -37.12 -0.17 0.55 16 35 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16 36 H 0.18 0.67 8.06 -52.49 -0.42 0.25 16 37 H 0.15 1.05 8.06 -52.48 -0.42 0.63 16 38 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 39 H 0.11 2.25 6.19 -51.93 -0.32 1.93 16 LS Contribution 345.17 15.07 5.20 5.20 Total: -1.00 -34.63 345.17 -9.91 -44.54 By element: Atomic # 1 Polarization: 10.16 SS G_CDS: -4.97 Total: 5.19 kcal Atomic # 6 Polarization: -1.98 SS G_CDS: -1.48 Total: -3.45 kcal Atomic # 7 Polarization: -57.19 SS G_CDS: -0.12 Total: -57.30 kcal Atomic # 8 Polarization: -10.44 SS G_CDS: 0.08 Total: -10.36 kcal Atomic # 14 Polarization: 23.03 SS G_CDS: -5.02 Total: 18.00 kcal Atomic # 16 Polarization: 2.05 SS G_CDS: -2.15 Total: -0.10 kcal Atomic # 17 Polarization: -0.26 SS G_CDS: -1.45 Total: -1.71 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -34.63 -9.91 -44.54 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001752798524.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.290 kcal (2) G-P(sol) polarization free energy of solvation -34.627 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.663 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.908 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.535 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.755 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.88 seconds