Wall clock time and date at job start Tue Mar 31 2020 15:48:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86797 * 120.00114 * 2 1 4 4 H 1.48505 * 109.46952 * 180.02562 * 3 2 1 5 5 H 1.48503 * 109.47086 * 300.00170 * 3 2 1 6 6 H 1.48491 * 109.47258 * 60.00035 * 3 2 1 7 7 C 1.38814 * 119.99832 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00168 * 179.97438 * 7 2 1 9 9 N 1.36944 * 120.00118 * 359.97438 * 7 2 1 10 10 C 1.46493 * 119.99734 * 179.97438 * 9 7 2 11 11 C 1.53004 * 109.46783 * 180.02562 * 10 9 7 12 12 H 1.09002 * 109.52391 * 304.92162 * 11 10 9 13 13 C 1.53353 * 109.68580 * 184.75513 * 11 10 9 14 14 C 1.53040 * 109.60914 * 178.75026 * 13 11 10 15 15 C 1.53184 * 109.31141 * 61.37011 * 14 13 11 16 16 N 1.46924 * 108.78047 * 305.36299 * 15 14 13 17 17 C 1.34771 * 120.63599 * 233.58779 * 16 15 14 18 18 O 1.21720 * 120.00379 * 174.36938 * 17 16 15 19 19 C 1.46439 * 119.99803 * 354.37044 * 17 16 15 20 20 S 1.75827 * 125.46462 * 319.30162 * 19 17 16 21 21 C 1.70604 * 91.58765 * 179.91192 * 20 19 17 22 22 C 1.33767 * 110.99862 * 0.35943 * 21 20 19 23 23 C 1.36797 * 125.46269 * 139.60723 * 19 17 16 24 24 Cl 1.73597 * 123.37714 * 359.97438 * 23 19 17 25 25 C 1.46925 * 118.73289 * 53.61274 * 16 15 14 26 26 H 0.96996 * 119.99693 * 359.97438 * 1 2 3 27 27 H 0.96999 * 119.99584 * 0.02562 * 9 7 2 28 28 H 1.09003 * 109.47353 * 60.00828 * 10 9 7 29 29 H 1.09002 * 109.47653 * 300.00367 * 10 9 7 30 30 H 1.09007 * 109.42000 * 58.70738 * 13 11 10 31 31 H 1.09006 * 109.42020 * 298.78647 * 13 11 10 32 32 H 1.09004 * 109.49475 * 301.41755 * 14 13 11 33 33 H 1.08998 * 109.52048 * 181.34174 * 14 13 11 34 34 H 1.09003 * 109.58436 * 185.57879 * 15 14 13 35 35 H 1.09003 * 109.70540 * 65.22593 * 15 14 13 36 36 H 1.08001 * 124.49841 * 180.02562 * 21 20 19 37 37 H 1.08005 * 122.45308 * 179.70413 * 22 21 20 38 38 H 1.09002 * 109.59080 * 66.17423 * 25 16 15 39 39 H 1.09004 * 109.58790 * 186.46385 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7103 1.3463 -0.0006 5 1 1.8915 2.3964 -1.2125 6 1 1.8915 2.3964 1.2124 7 6 2.0102 -1.2022 -0.0005 8 1 3.0903 -1.2022 -0.0010 9 7 1.3255 -2.3881 -0.0005 10 6 2.0580 -3.6568 -0.0017 11 6 1.0637 -4.8197 -0.0021 12 1 0.3803 -4.7150 0.8406 13 6 1.8218 -6.1475 0.1164 14 6 0.8240 -7.3076 0.1472 15 6 0.0248 -7.3232 -1.1595 16 7 -0.5905 -6.0031 -1.3535 17 6 -1.9161 -5.8881 -1.5672 18 8 -2.4301 -4.7862 -1.6243 19 6 -2.7383 -7.0888 -1.7309 20 16 -2.2793 -8.5237 -2.6374 21 6 -3.7586 -9.2887 -2.2672 22 6 -4.5336 -8.4965 -1.5180 23 6 -3.9890 -7.2716 -1.2078 24 17 -4.8068 -6.0781 -0.2484 25 6 0.2671 -4.8109 -1.3105 26 1 -0.4849 0.8400 0.0004 27 1 0.3555 -2.3881 -0.0005 28 1 2.6853 -3.7150 0.8879 29 1 2.6841 -3.7142 -0.8921 30 1 2.4089 -6.1490 1.0349 31 1 2.4866 -6.2630 -0.7397 32 1 0.1431 -7.1794 0.9887 33 1 1.3630 -8.2487 0.2554 34 1 -0.7535 -8.0842 -1.1028 35 1 0.6901 -7.5425 -1.9946 36 1 -4.0350 -10.2787 -2.5986 37 1 -5.5151 -8.7964 -1.1814 38 1 0.9542 -4.8243 -2.1566 39 1 -0.3510 -3.9143 -1.3559 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001752798524.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:48:04 Heat of formation + Delta-G solvation = -17.560290 kcal Electronic energy + Delta-G solvation = -23459.772190 eV Core-core repulsion = 19940.237353 eV Total energy + Delta-G solvation = -3519.534837 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 328.075 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -41.37275 -39.35858 -38.47516 -37.14691 -36.63478 -34.52233 -33.11644 -31.80563 -30.74724 -27.43971 -26.90797 -25.38453 -24.89551 -22.77375 -22.27421 -20.98683 -20.26745 -19.28040 -18.94943 -17.49637 -17.33884 -16.71955 -16.59683 -16.13097 -15.62087 -15.41984 -15.30683 -14.90338 -14.74087 -14.52655 -14.30996 -14.14128 -14.00966 -13.74181 -13.62731 -13.04436 -12.96445 -12.80004 -12.50996 -12.28131 -12.16693 -12.01694 -11.94247 -11.91193 -11.81312 -11.57287 -11.33201 -11.10877 -10.97392 -10.00157 -9.67282 -9.41539 -9.01584 -7.94658 -5.25528 -0.64801 0.03835 0.73308 1.16275 1.37423 1.44637 1.46988 1.57120 1.70340 2.04163 2.55059 3.38342 3.39024 3.69498 3.85535 3.88765 4.00315 4.05995 4.10129 4.22241 4.28308 4.41115 4.55895 4.66871 4.75247 4.77584 4.85758 4.90046 4.92991 4.99867 5.03917 5.11691 5.21946 5.33811 5.44718 5.46954 5.51244 6.25507 6.27474 6.99837 7.30907 8.07838 8.29579 9.29005 Molecular weight = 328.08amu Principal moments of inertia in cm(-1) A = 0.016705 B = 0.003357 C = 0.002955 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1675.693757 B = 8339.237245 C = 9472.262509 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.973 5.973 2 C -0.082 4.082 3 Si 0.977 3.023 4 H -0.260 1.260 5 H -0.295 1.295 6 H -0.294 1.294 7 C -0.244 4.244 8 H 0.081 0.919 9 N -0.750 5.750 10 C 0.159 3.841 11 C -0.095 4.095 12 H 0.046 0.954 13 C -0.105 4.105 14 C -0.125 4.125 15 C 0.087 3.913 16 N -0.602 5.602 17 C 0.574 3.426 18 O -0.565 6.565 19 C -0.303 4.303 20 S 0.323 5.677 21 C -0.210 4.210 22 C -0.155 4.155 23 C -0.001 4.001 24 Cl -0.052 7.052 25 C 0.129 3.871 26 H 0.249 0.751 27 H 0.370 0.630 28 H 0.028 0.972 29 H 0.031 0.969 30 H 0.077 0.923 31 H 0.085 0.915 32 H 0.052 0.948 33 H 0.118 0.882 34 H 0.099 0.901 35 H 0.102 0.898 36 H 0.220 0.780 37 H 0.172 0.828 38 H 0.081 0.919 39 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.262 -30.463 -5.269 31.087 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.624 5.624 2 C -0.273 4.273 3 Si 0.806 3.194 4 H -0.184 1.184 5 H -0.222 1.222 6 H -0.221 1.221 7 C -0.376 4.376 8 H 0.099 0.901 9 N -0.393 5.393 10 C 0.032 3.968 11 C -0.115 4.115 12 H 0.064 0.936 13 C -0.143 4.143 14 C -0.163 4.163 15 C -0.035 4.035 16 N -0.334 5.334 17 C 0.362 3.638 18 O -0.445 6.445 19 C -0.424 4.424 20 S 0.590 5.410 21 C -0.348 4.348 22 C -0.185 4.185 23 C -0.044 4.044 24 Cl -0.023 7.023 25 C 0.007 3.993 26 H 0.058 0.942 27 H 0.201 0.799 28 H 0.046 0.954 29 H 0.049 0.951 30 H 0.096 0.904 31 H 0.104 0.896 32 H 0.071 0.929 33 H 0.136 0.864 34 H 0.116 0.884 35 H 0.120 0.880 36 H 0.237 0.763 37 H 0.189 0.811 38 H 0.099 0.901 39 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -2.143 -30.146 -6.061 30.823 hybrid contribution -1.882 2.356 1.190 3.241 sum -4.024 -27.790 -4.872 28.499 Atomic orbital electron populations 1.69892 1.06968 1.25909 1.59617 1.25688 0.96333 1.01535 1.03793 0.85011 0.78377 0.79454 0.76544 1.18400 1.22182 1.22143 1.19727 0.91622 0.85250 1.40953 0.90071 1.42718 1.05549 1.01585 1.89403 1.20835 0.93516 0.84070 0.98341 1.21609 0.97003 0.96604 0.96308 0.93580 1.21571 0.97665 0.91262 1.03798 1.21894 0.97935 1.00187 0.96297 1.22446 0.98608 0.82407 1.00000 1.48101 1.05939 1.09280 1.70052 1.17423 0.82116 0.87539 0.76747 1.90907 1.72762 1.28672 1.52126 1.24466 1.00273 1.03078 1.14550 1.82929 1.13562 0.99914 1.44585 1.25839 0.99334 1.06701 1.02904 1.19870 1.04027 0.91182 1.03414 1.20727 0.92105 0.93212 0.98391 1.98407 1.77938 1.56510 1.69481 1.21455 0.92645 0.87065 0.98170 0.94208 0.79887 0.95443 0.95110 0.90445 0.89647 0.92933 0.86374 0.88351 0.87957 0.76293 0.81059 0.90127 0.93111 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -64.39 13.06 21.65 0.28 -64.10 16 2 C -0.08 -4.98 5.50 84.86 0.47 -4.51 16 3 Si 0.98 48.42 29.55 68.60 2.03 50.44 16 4 H -0.26 -11.84 7.11 99.48 0.71 -11.13 16 5 H -0.29 -14.60 7.11 99.48 0.71 -13.90 16 6 H -0.29 -14.55 7.11 99.48 0.71 -13.85 16 7 C -0.24 -14.29 9.99 84.03 0.84 -13.45 16 8 H 0.08 4.48 7.83 -2.91 -0.02 4.46 16 9 N -0.75 -40.80 5.38 -343.45 -1.85 -42.65 16 10 C 0.16 6.48 5.67 86.38 0.49 6.97 16 11 C -0.10 -3.20 2.39 -10.61 -0.03 -3.22 16 12 H 0.05 1.79 8.14 -2.39 -0.02 1.78 16 13 C -0.11 -2.26 5.19 30.73 0.16 -2.10 16 14 C -0.13 -2.09 6.08 30.67 0.19 -1.90 16 15 C 0.09 1.54 5.62 86.36 0.49 2.02 16 16 N -0.60 -17.71 2.97 -823.89 -2.45 -20.16 16 17 C 0.57 19.89 7.33 86.38 0.63 20.52 16 18 O -0.56 -26.14 15.62 -4.41 -0.07 -26.21 16 19 C -0.30 -7.70 5.40 24.07 0.13 -7.57 16 20 S 0.32 4.07 20.04 -56.49 -1.13 2.94 16 21 C -0.21 -1.96 10.92 66.80 0.73 -1.23 16 22 C -0.16 -2.39 10.06 21.10 0.21 -2.18 16 23 C 0.00 -0.03 6.38 21.78 0.14 0.11 16 24 Cl -0.05 -1.59 28.05 -2.72 -0.08 -1.67 16 25 C 0.13 4.59 5.52 86.36 0.48 5.07 16 26 H 0.25 15.96 8.31 -92.71 -0.77 15.19 16 27 H 0.37 22.27 6.89 -92.71 -0.64 21.63 16 28 H 0.03 1.10 8.14 -2.39 -0.02 1.08 16 29 H 0.03 1.20 8.14 -2.39 -0.02 1.18 16 30 H 0.08 1.56 8.14 -2.38 -0.02 1.54 16 31 H 0.08 1.55 8.14 -2.38 -0.02 1.53 16 32 H 0.05 1.06 8.14 -2.38 -0.02 1.04 16 33 H 0.12 1.08 8.14 -2.39 -0.02 1.06 16 34 H 0.10 1.41 4.52 -11.80 -0.05 1.35 16 35 H 0.10 1.28 8.14 -2.39 -0.02 1.26 16 36 H 0.22 0.17 8.06 -2.91 -0.02 0.14 16 37 H 0.17 1.92 8.06 -2.91 -0.02 1.90 16 38 H 0.08 2.61 8.14 -2.39 -0.02 2.59 16 39 H 0.05 2.39 6.19 -2.38 -0.01 2.37 16 Total: -1.00 -83.70 345.17 2.06 -81.64 By element: Atomic # 1 Polarization: 20.83 SS G_CDS: 0.40 Total: 21.23 kcal Atomic # 6 Polarization: -6.39 SS G_CDS: 4.92 Total: -1.46 kcal Atomic # 7 Polarization: -122.90 SS G_CDS: -4.01 Total: -126.91 kcal Atomic # 8 Polarization: -26.14 SS G_CDS: -0.07 Total: -26.21 kcal Atomic # 14 Polarization: 48.42 SS G_CDS: 2.03 Total: 50.44 kcal Atomic # 16 Polarization: 4.07 SS G_CDS: -1.13 Total: 2.94 kcal Atomic # 17 Polarization: -1.59 SS G_CDS: -0.08 Total: -1.67 kcal Total: -83.70 2.06 -81.64 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001752798524.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.079 kcal (2) G-P(sol) polarization free energy of solvation -83.697 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.618 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.058 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.639 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.560 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds