Wall clock time and date at job start Tue Mar 31 2020 15:44:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86796 * 119.99815 * 2 1 4 4 H 1.48503 * 109.47542 * 89.99855 * 3 2 1 5 5 H 1.48506 * 109.46957 * 209.99765 * 3 2 1 6 6 H 1.48505 * 109.47073 * 329.99516 * 3 2 1 7 7 C 1.38818 * 120.00120 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99637 * 0.02562 * 7 2 1 9 9 N 1.36933 * 119.99704 * 180.02562 * 7 2 1 10 10 C 1.46502 * 119.99435 * 179.97438 * 9 7 2 11 11 C 1.53006 * 109.46891 * 179.97438 * 10 9 7 12 12 H 1.09001 * 109.49815 * 304.94149 * 11 10 9 13 13 C 1.53036 * 109.49654 * 184.84123 * 11 10 9 14 14 C 1.53046 * 109.53721 * 178.68791 * 13 11 10 15 15 C 1.53188 * 109.31432 * 61.36370 * 14 13 11 16 16 N 1.46931 * 108.77511 * 305.36462 * 15 14 13 17 17 C 1.34771 * 120.63152 * 233.58567 * 16 15 14 18 18 O 1.21703 * 119.99830 * 173.66027 * 17 16 15 19 19 C 1.46567 * 120.00123 * 353.66181 * 17 16 15 20 20 C 1.36675 * 125.45353 * 149.57206 * 19 17 16 21 21 C 1.37527 * 113.29216 * 179.97438 * 20 19 17 22 22 Cl 1.73592 * 122.46536 * 180.02562 * 21 20 19 23 23 C 1.33883 * 115.07592 * 0.02562 * 21 20 19 24 24 S 1.70617 * 110.95876 * 359.72530 * 23 21 20 25 25 C 1.46933 * 118.73664 * 53.61150 * 16 15 14 26 26 H 0.96998 * 120.00260 * 0.02562 * 1 2 3 27 27 H 0.96993 * 120.00263 * 0.02562 * 9 7 2 28 28 H 1.08996 * 109.47901 * 299.99911 * 10 9 7 29 29 H 1.09002 * 109.46824 * 60.00603 * 10 9 7 30 30 H 1.08998 * 109.46278 * 298.70183 * 13 11 10 31 31 H 1.09000 * 109.46164 * 58.66589 * 13 11 10 32 32 H 1.09006 * 109.49390 * 301.41276 * 14 13 11 33 33 H 1.09002 * 109.52456 * 181.33238 * 14 13 11 34 34 H 1.08997 * 109.58532 * 185.58230 * 15 14 13 35 35 H 1.08997 * 109.70335 * 65.22122 * 15 14 13 36 36 H 1.08008 * 123.35470 * 359.97438 * 20 19 17 37 37 H 1.07994 * 124.51975 * 179.97438 * 23 21 20 38 38 H 1.08996 * 109.58251 * 186.60173 * 25 16 15 39 39 H 1.08994 * 109.70214 * 66.24426 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 2.4976 2.0465 1.4001 5 1 3.5478 1.4401 -0.7000 6 1 1.4476 2.6526 -0.7002 7 6 2.0103 -1.2022 0.0005 8 1 1.4703 -2.1375 0.0005 9 7 3.3796 -1.2021 0.0011 10 6 4.1121 -2.4708 0.0022 11 6 5.6164 -2.1912 0.0020 12 1 5.8666 -1.5469 -0.8409 13 6 6.3813 -3.5113 -0.1186 14 6 7.8853 -3.2301 -0.1519 15 6 8.3022 -2.5474 1.1546 16 7 7.4692 -1.3530 1.3506 17 6 8.0352 -0.1486 1.5641 18 8 7.3413 0.8502 1.6100 19 6 9.4862 -0.0417 1.7408 20 6 10.2505 1.0354 1.3890 21 6 11.5867 0.8684 1.6681 22 17 12.7711 2.0887 1.3195 23 6 11.9071 -0.3045 2.2286 24 16 10.5213 -1.2757 2.4460 25 6 6.0075 -1.4967 1.3102 26 1 -0.4850 0.8400 -0.0004 27 1 3.8646 -0.3621 0.0014 28 1 3.8486 -3.0419 0.8924 29 1 3.8492 -3.0429 -0.8876 30 1 6.1492 -4.1449 0.7374 31 1 6.0864 -4.0193 -1.0368 32 1 8.1146 -2.5763 -0.9934 33 1 8.4290 -4.1685 -0.2615 34 1 9.3508 -2.2559 1.0961 35 1 8.1595 -3.2334 1.9895 36 1 9.8454 1.9287 0.9369 37 1 12.9085 -0.5953 2.5094 38 1 5.5422 -0.5120 1.3544 39 1 5.6737 -2.0969 2.1565 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001752807716.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:44:33 Heat of formation + Delta-G solvation = 7.635072 kcal Electronic energy + Delta-G solvation = -23268.377131 eV Core-core repulsion = 19749.934847 eV Total energy + Delta-G solvation = -3518.442285 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 328.075 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.43312 -38.63327 -37.61535 -36.31951 -35.19007 -33.08610 -31.87441 -30.69960 -29.86762 -26.51754 -25.84718 -24.56118 -23.02658 -21.62767 -21.13357 -20.02698 -19.47641 -18.37044 -17.48696 -16.64511 -16.50449 -15.76522 -15.41010 -14.84728 -14.72058 -14.18992 -14.06493 -13.96428 -13.63386 -13.60616 -13.31015 -13.02999 -12.94863 -12.63788 -12.45445 -12.02438 -11.81021 -11.57949 -11.42571 -11.26576 -11.18995 -10.91162 -10.73487 -10.53333 -10.34137 -10.13022 -10.01565 -9.53868 -9.39463 -8.87567 -8.78525 -8.72546 -7.20239 -5.73375 -3.09116 0.02146 0.78669 1.09364 1.78626 2.07925 2.71813 2.93724 3.46039 3.51088 3.54472 4.14798 4.46670 4.52162 4.65079 4.71821 4.75563 4.78619 5.01175 5.11706 5.17664 5.22568 5.39962 5.49306 5.55827 5.61258 5.62687 5.67171 5.76364 5.83991 5.95240 5.98580 6.23229 6.28765 6.39257 6.64030 6.73454 7.18091 7.93616 8.02018 8.45582 9.24587 9.97459 10.16431 11.44829 Molecular weight = 328.08amu Principal moments of inertia in cm(-1) A = 0.016581 B = 0.003226 C = 0.002802 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1688.245552 B = 8676.784663 C = 9989.671819 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C 0.006 3.994 3 Si 0.881 3.119 4 H -0.282 1.282 5 H -0.276 1.276 6 H -0.291 1.291 7 C -0.245 4.245 8 H 0.090 0.910 9 N -0.757 5.757 10 C 0.165 3.835 11 C -0.112 4.112 12 H 0.075 0.925 13 C -0.112 4.112 14 C -0.130 4.130 15 C 0.093 3.907 16 N -0.605 5.605 17 C 0.586 3.414 18 O -0.515 6.515 19 C -0.250 4.250 20 C -0.058 4.058 21 C -0.056 4.056 22 Cl -0.048 7.048 23 C -0.250 4.250 24 S 0.266 5.734 25 C 0.120 3.880 26 H 0.259 0.741 27 H 0.362 0.638 28 H 0.029 0.971 29 H 0.031 0.969 30 H 0.068 0.932 31 H 0.071 0.929 32 H 0.068 0.932 33 H 0.078 0.922 34 H 0.083 0.917 35 H 0.077 0.923 36 H 0.162 0.838 37 H 0.178 0.822 38 H 0.099 0.901 39 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 29.599 -6.822 4.256 30.672 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.190 4.190 3 Si 0.711 3.289 4 H -0.208 1.208 5 H -0.202 1.202 6 H -0.217 1.217 7 C -0.375 4.375 8 H 0.108 0.892 9 N -0.403 5.403 10 C 0.038 3.962 11 C -0.132 4.132 12 H 0.093 0.907 13 C -0.150 4.150 14 C -0.169 4.169 15 C -0.032 4.032 16 N -0.338 5.338 17 C 0.372 3.628 18 O -0.392 6.392 19 C -0.370 4.370 20 C -0.090 4.090 21 C -0.096 4.096 22 Cl -0.020 7.020 23 C -0.388 4.388 24 S 0.534 5.466 25 C -0.001 4.001 26 H 0.069 0.931 27 H 0.195 0.805 28 H 0.047 0.953 29 H 0.049 0.951 30 H 0.086 0.914 31 H 0.090 0.910 32 H 0.087 0.913 33 H 0.096 0.904 34 H 0.100 0.900 35 H 0.095 0.905 36 H 0.180 0.820 37 H 0.196 0.804 38 H 0.117 0.883 39 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 28.857 -7.694 4.874 30.260 hybrid contribution 1.143 2.797 -0.648 3.090 sum 30.001 -4.898 4.226 30.690 Atomic orbital electron populations 1.69703 1.05115 1.25856 1.57563 1.24656 0.95213 0.97214 1.01881 0.86600 0.79221 0.84918 0.78134 1.20846 1.20232 1.21710 1.19033 0.80598 0.94689 1.43182 0.89201 1.42777 1.04139 1.02239 1.91174 1.20613 0.87204 0.89478 0.98949 1.21763 0.97049 0.96725 0.97651 0.90657 1.21521 0.93511 0.97175 1.02820 1.21884 0.97382 1.00705 0.96881 1.22156 0.94591 0.87319 0.99090 1.48030 1.08092 1.06926 1.70785 1.16914 0.84954 0.83586 0.77352 1.90906 1.62395 1.35504 1.50373 1.24580 0.98325 1.00560 1.13576 1.20498 0.90504 0.99061 0.98964 1.19529 0.90843 0.92473 1.06774 1.98378 1.56009 1.53723 1.93880 1.25501 1.06865 0.98870 1.07592 1.83339 0.93109 1.14731 1.55456 1.21814 0.76937 1.03483 0.97914 0.93066 0.80480 0.95280 0.95106 0.91378 0.91041 0.91303 0.90372 0.89951 0.90474 0.82042 0.80446 0.88277 0.90666 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -29.94 13.97 55.49 0.78 -29.16 16 2 C 0.01 0.19 5.50 -17.43 -0.10 0.09 16 3 Si 0.88 23.29 27.73 -169.99 -4.71 18.58 16 4 H -0.28 -7.48 7.11 56.52 0.40 -7.08 16 5 H -0.28 -7.04 6.52 56.52 0.37 -6.68 16 6 H -0.29 -7.71 7.11 56.52 0.40 -7.31 16 7 C -0.25 -7.05 10.47 -15.06 -0.16 -7.21 16 8 H 0.09 2.74 8.06 -52.49 -0.42 2.31 16 9 N -0.76 -18.26 5.18 -59.90 -0.31 -18.57 16 10 C 0.17 3.08 5.65 -4.04 -0.02 3.06 16 11 C -0.11 -1.65 2.38 -90.50 -0.22 -1.86 16 12 H 0.08 1.21 8.14 -51.93 -0.42 0.79 16 13 C -0.11 -1.18 5.17 -26.69 -0.14 -1.32 16 14 C -0.13 -1.10 6.08 -26.61 -0.16 -1.26 16 15 C 0.09 0.81 5.52 -3.71 -0.02 0.79 16 16 N -0.61 -7.76 2.97 -174.35 -0.52 -8.28 16 17 C 0.59 8.57 7.58 -12.91 -0.10 8.47 16 18 O -0.52 -9.85 16.40 5.19 0.09 -9.76 16 19 C -0.25 -2.80 5.73 -36.79 -0.21 -3.02 16 20 C -0.06 -0.63 10.02 -40.41 -0.40 -1.03 16 21 C -0.06 -0.51 6.25 -41.37 -0.26 -0.77 16 22 Cl -0.05 -0.43 29.10 -51.86 -1.51 -1.93 16 23 C -0.25 -1.79 10.78 29.20 0.31 -1.48 16 24 S 0.27 1.90 19.33 -107.50 -2.08 -0.18 16 25 C 0.12 1.81 5.53 -3.71 -0.02 1.79 16 26 H 0.26 7.92 8.31 -40.82 -0.34 7.58 16 27 H 0.36 8.80 4.75 -40.82 -0.19 8.60 16 28 H 0.03 0.54 8.14 -51.93 -0.42 0.12 16 29 H 0.03 0.58 8.14 -51.93 -0.42 0.16 16 30 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 31 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16 32 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 33 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 34 H 0.08 0.61 3.99 -26.31 -0.11 0.50 16 35 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 36 H 0.16 1.81 8.06 -52.48 -0.42 1.38 16 37 H 0.18 0.85 8.06 -52.49 -0.42 0.42 16 38 H 0.10 1.86 6.19 -51.93 -0.32 1.54 16 39 H 0.08 1.06 8.14 -51.93 -0.42 0.64 16 LS Contribution 342.78 15.07 5.17 5.17 Total: -1.00 -34.51 342.78 -9.46 -43.97 By element: Atomic # 1 Polarization: 8.79 SS G_CDS: -4.86 Total: 3.93 kcal Atomic # 6 Polarization: -2.27 SS G_CDS: -1.49 Total: -3.76 kcal Atomic # 7 Polarization: -55.95 SS G_CDS: -0.05 Total: -56.01 kcal Atomic # 8 Polarization: -9.85 SS G_CDS: 0.09 Total: -9.76 kcal Atomic # 14 Polarization: 23.29 SS G_CDS: -4.71 Total: 18.58 kcal Atomic # 16 Polarization: 1.90 SS G_CDS: -2.08 Total: -0.18 kcal Atomic # 17 Polarization: -0.43 SS G_CDS: -1.51 Total: -1.93 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -34.51 -9.46 -43.97 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001752807716.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.605 kcal (2) G-P(sol) polarization free energy of solvation -34.514 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.091 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.456 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.970 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.635 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds