Wall clock time and date at job start Tue Mar 31 2020 15:44:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86796 * 119.99815 * 2 1 4 4 H 1.48503 * 109.47542 * 89.99855 * 3 2 1 5 5 H 1.48506 * 109.46957 * 209.99765 * 3 2 1 6 6 H 1.48505 * 109.47073 * 329.99516 * 3 2 1 7 7 C 1.38818 * 120.00120 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99637 * 0.02562 * 7 2 1 9 9 N 1.36933 * 119.99704 * 180.02562 * 7 2 1 10 10 C 1.46502 * 119.99435 * 179.97438 * 9 7 2 11 11 C 1.53006 * 109.46891 * 179.97438 * 10 9 7 12 12 H 1.09001 * 109.49815 * 304.94149 * 11 10 9 13 13 C 1.53036 * 109.49654 * 184.84123 * 11 10 9 14 14 C 1.53046 * 109.53721 * 178.68791 * 13 11 10 15 15 C 1.53188 * 109.31432 * 61.36370 * 14 13 11 16 16 N 1.46931 * 108.77511 * 305.36462 * 15 14 13 17 17 C 1.34771 * 120.63152 * 233.58567 * 16 15 14 18 18 O 1.21703 * 119.99830 * 173.66027 * 17 16 15 19 19 C 1.46567 * 120.00123 * 353.66181 * 17 16 15 20 20 C 1.36675 * 125.45353 * 149.57206 * 19 17 16 21 21 C 1.37527 * 113.29216 * 179.97438 * 20 19 17 22 22 Cl 1.73592 * 122.46536 * 180.02562 * 21 20 19 23 23 C 1.33883 * 115.07592 * 0.02562 * 21 20 19 24 24 S 1.70617 * 110.95876 * 359.72530 * 23 21 20 25 25 C 1.46933 * 118.73664 * 53.61150 * 16 15 14 26 26 H 0.96998 * 120.00260 * 0.02562 * 1 2 3 27 27 H 0.96993 * 120.00263 * 0.02562 * 9 7 2 28 28 H 1.08996 * 109.47901 * 299.99911 * 10 9 7 29 29 H 1.09002 * 109.46824 * 60.00603 * 10 9 7 30 30 H 1.08998 * 109.46278 * 298.70183 * 13 11 10 31 31 H 1.09000 * 109.46164 * 58.66589 * 13 11 10 32 32 H 1.09006 * 109.49390 * 301.41276 * 14 13 11 33 33 H 1.09002 * 109.52456 * 181.33238 * 14 13 11 34 34 H 1.08997 * 109.58532 * 185.58230 * 15 14 13 35 35 H 1.08997 * 109.70335 * 65.22122 * 15 14 13 36 36 H 1.08008 * 123.35470 * 359.97438 * 20 19 17 37 37 H 1.07994 * 124.51975 * 179.97438 * 23 21 20 38 38 H 1.08996 * 109.58251 * 186.60173 * 25 16 15 39 39 H 1.08994 * 109.70214 * 66.24426 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 2.4976 2.0465 1.4001 5 1 3.5478 1.4401 -0.7000 6 1 1.4476 2.6526 -0.7002 7 6 2.0103 -1.2022 0.0005 8 1 1.4703 -2.1375 0.0005 9 7 3.3796 -1.2021 0.0011 10 6 4.1121 -2.4708 0.0022 11 6 5.6164 -2.1912 0.0020 12 1 5.8666 -1.5469 -0.8409 13 6 6.3813 -3.5113 -0.1186 14 6 7.8853 -3.2301 -0.1519 15 6 8.3022 -2.5474 1.1546 16 7 7.4692 -1.3530 1.3506 17 6 8.0352 -0.1486 1.5641 18 8 7.3413 0.8502 1.6100 19 6 9.4862 -0.0417 1.7408 20 6 10.2505 1.0354 1.3890 21 6 11.5867 0.8684 1.6681 22 17 12.7711 2.0887 1.3195 23 6 11.9071 -0.3045 2.2286 24 16 10.5213 -1.2757 2.4460 25 6 6.0075 -1.4967 1.3102 26 1 -0.4850 0.8400 -0.0004 27 1 3.8646 -0.3621 0.0014 28 1 3.8486 -3.0419 0.8924 29 1 3.8492 -3.0429 -0.8876 30 1 6.1492 -4.1449 0.7374 31 1 6.0864 -4.0193 -1.0368 32 1 8.1146 -2.5763 -0.9934 33 1 8.4290 -4.1685 -0.2615 34 1 9.3508 -2.2559 1.0961 35 1 8.1595 -3.2334 1.9895 36 1 9.8454 1.9287 0.9369 37 1 12.9085 -0.5953 2.5094 38 1 5.5422 -0.5120 1.3544 39 1 5.6737 -2.0969 2.1565 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001752807716.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:44:32 Heat of formation + Delta-G solvation = -15.268494 kcal Electronic energy + Delta-G solvation = -23269.370304 eV Core-core repulsion = 19749.934847 eV Total energy + Delta-G solvation = -3519.435458 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 328.075 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.46374 -39.44948 -38.65218 -37.02105 -36.81252 -34.59319 -33.31535 -32.10461 -30.88837 -27.72694 -27.05344 -25.42879 -24.61311 -22.73173 -22.39414 -21.08832 -20.25243 -19.70982 -19.13255 -17.55185 -17.32165 -16.74178 -16.66686 -16.43106 -15.84001 -15.71895 -15.19914 -14.96173 -14.81510 -14.47276 -14.35533 -14.22868 -14.13902 -13.84181 -13.78560 -13.37905 -13.07060 -12.87293 -12.49413 -12.41504 -12.24542 -12.05079 -11.99680 -11.91228 -11.78311 -11.61687 -11.42051 -11.16814 -11.03570 -10.15266 -9.75502 -9.38288 -9.32291 -8.07746 -5.39055 -0.71185 0.14300 0.40232 1.02238 1.31652 1.35481 1.38494 1.39737 1.76409 1.95129 2.41633 3.24673 3.31025 3.53037 3.75682 3.83112 3.88038 4.00972 4.04847 4.08980 4.20770 4.35649 4.48323 4.52633 4.70105 4.75015 4.79150 4.80212 4.86129 4.88813 5.02617 5.10395 5.19113 5.31695 5.38300 5.48328 5.72944 6.17775 6.19158 6.88913 7.03711 7.81628 7.97481 9.13938 Molecular weight = 328.08amu Principal moments of inertia in cm(-1) A = 0.016581 B = 0.003226 C = 0.002802 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1688.245552 B = 8676.784663 C = 9989.671819 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.979 5.979 2 C -0.056 4.056 3 Si 0.942 3.058 4 H -0.284 1.284 5 H -0.267 1.267 6 H -0.290 1.290 7 C -0.228 4.228 8 H 0.067 0.933 9 N -0.763 5.763 10 C 0.160 3.840 11 C -0.100 4.100 12 H 0.056 0.944 13 C -0.107 4.107 14 C -0.125 4.125 15 C 0.084 3.916 16 N -0.601 5.601 17 C 0.580 3.420 18 O -0.579 6.579 19 C -0.290 4.290 20 C -0.063 4.063 21 C -0.077 4.077 22 Cl -0.050 7.050 23 C -0.232 4.232 24 S 0.352 5.648 25 C 0.122 3.878 26 H 0.258 0.742 27 H 0.361 0.639 28 H 0.037 0.963 29 H 0.034 0.966 30 H 0.085 0.915 31 H 0.078 0.922 32 H 0.057 0.943 33 H 0.118 0.882 34 H 0.098 0.902 35 H 0.106 0.894 36 H 0.143 0.857 37 H 0.210 0.790 38 H 0.055 0.945 39 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 33.526 -9.296 4.926 35.138 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.631 5.631 2 C -0.248 4.248 3 Si 0.771 3.229 4 H -0.211 1.211 5 H -0.192 1.192 6 H -0.216 1.216 7 C -0.359 4.359 8 H 0.085 0.915 9 N -0.409 5.409 10 C 0.034 3.966 11 C -0.120 4.120 12 H 0.075 0.925 13 C -0.145 4.145 14 C -0.163 4.163 15 C -0.038 4.038 16 N -0.333 5.333 17 C 0.368 3.632 18 O -0.460 6.460 19 C -0.410 4.410 20 C -0.097 4.097 21 C -0.116 4.116 22 Cl -0.022 7.022 23 C -0.371 4.371 24 S 0.620 5.380 25 C -0.001 4.001 26 H 0.067 0.933 27 H 0.194 0.806 28 H 0.055 0.945 29 H 0.052 0.948 30 H 0.104 0.896 31 H 0.097 0.903 32 H 0.076 0.924 33 H 0.136 0.864 34 H 0.116 0.884 35 H 0.124 0.876 36 H 0.161 0.839 37 H 0.227 0.773 38 H 0.073 0.927 39 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 32.851 -10.244 5.534 34.854 hybrid contribution -0.012 3.399 -0.822 3.497 sum 32.839 -6.846 4.712 33.874 Atomic orbital electron populations 1.69839 1.06675 1.26521 1.60014 1.25320 0.95942 1.00435 1.03077 0.85607 0.78268 0.81094 0.77914 1.21070 1.19223 1.21598 1.19088 0.82631 0.93593 1.40593 0.91545 1.42898 1.02718 1.04368 1.90916 1.20859 0.89487 0.87142 0.99112 1.21630 0.94660 0.99039 0.96666 0.92534 1.21524 0.94454 0.94479 1.04027 1.21895 0.95930 1.02294 0.96132 1.22558 0.94680 0.86030 1.00518 1.48098 1.07429 1.07932 1.69800 1.17427 0.86274 0.83170 0.76327 1.90858 1.64233 1.37580 1.53333 1.24323 0.97108 1.03211 1.16378 1.20484 0.91585 0.98600 0.99017 1.19442 0.90080 0.93545 1.08563 1.98374 1.55707 1.54063 1.94043 1.25969 1.08575 0.97731 1.04791 1.82928 0.90656 1.11696 1.52680 1.21591 0.78627 1.01260 0.98584 0.93265 0.80646 0.94492 0.94839 0.89638 0.90289 0.92402 0.86388 0.88417 0.87603 0.83923 0.77318 0.92653 0.89458 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.98 -64.52 13.97 21.65 0.30 -64.22 16 2 C -0.06 -3.44 5.50 84.86 0.47 -2.97 16 3 Si 0.94 49.72 27.73 68.60 1.90 51.62 16 4 H -0.28 -14.97 7.11 99.48 0.71 -14.27 16 5 H -0.27 -13.46 6.52 99.48 0.65 -12.82 16 6 H -0.29 -15.12 7.11 99.48 0.71 -14.41 16 7 C -0.23 -13.40 10.47 84.04 0.88 -12.52 16 8 H 0.07 4.16 8.06 -2.91 -0.02 4.14 16 9 N -0.76 -37.30 5.18 -343.44 -1.78 -39.08 16 10 C 0.16 5.90 5.65 86.38 0.49 6.39 16 11 C -0.10 -2.85 2.38 -10.71 -0.03 -2.88 16 12 H 0.06 1.82 8.14 -2.39 -0.02 1.80 16 13 C -0.11 -1.90 5.17 30.62 0.16 -1.74 16 14 C -0.12 -1.58 6.08 30.67 0.19 -1.40 16 15 C 0.08 1.14 5.52 86.36 0.48 1.62 16 16 N -0.60 -14.72 2.97 -823.74 -2.45 -17.17 16 17 C 0.58 17.15 7.58 86.42 0.66 17.81 16 18 O -0.58 -23.51 16.40 -4.36 -0.07 -23.58 16 19 C -0.29 -6.21 5.73 24.08 0.14 -6.07 16 20 C -0.06 -1.36 10.02 21.74 0.22 -1.14 16 21 C -0.08 -1.27 6.25 21.11 0.13 -1.14 16 22 Cl -0.05 -0.82 29.10 -2.72 -0.08 -0.90 16 23 C -0.23 -2.43 10.78 66.83 0.72 -1.71 16 24 S 0.35 3.61 19.33 -56.49 -1.09 2.52 16 25 C 0.12 3.65 5.53 86.36 0.48 4.13 16 26 H 0.26 16.24 8.31 -92.71 -0.77 15.47 16 27 H 0.36 17.85 4.75 -92.71 -0.44 17.41 16 28 H 0.04 1.33 8.14 -2.39 -0.02 1.31 16 29 H 0.03 1.24 8.14 -2.39 -0.02 1.22 16 30 H 0.09 1.27 8.14 -2.39 -0.02 1.25 16 31 H 0.08 1.33 8.14 -2.39 -0.02 1.31 16 32 H 0.06 0.90 8.14 -2.38 -0.02 0.88 16 33 H 0.12 0.69 8.14 -2.39 -0.02 0.67 16 34 H 0.10 1.01 3.99 -18.68 -0.07 0.94 16 35 H 0.11 0.92 8.14 -2.39 -0.02 0.90 16 36 H 0.14 3.47 8.06 -2.91 -0.02 3.45 16 37 H 0.21 0.88 8.06 -2.91 -0.02 0.85 16 38 H 0.05 2.17 6.19 -2.39 -0.01 2.15 16 39 H 0.09 2.36 8.14 -2.39 -0.02 2.34 16 Total: -1.00 -80.05 342.78 2.22 -77.82 By element: Atomic # 1 Polarization: 14.09 SS G_CDS: 0.52 Total: 14.60 kcal Atomic # 6 Polarization: -6.59 SS G_CDS: 4.97 Total: -1.62 kcal Atomic # 7 Polarization: -116.54 SS G_CDS: -3.93 Total: -120.47 kcal Atomic # 8 Polarization: -23.51 SS G_CDS: -0.07 Total: -23.58 kcal Atomic # 14 Polarization: 49.72 SS G_CDS: 1.90 Total: 51.62 kcal Atomic # 16 Polarization: 3.61 SS G_CDS: -1.09 Total: 2.52 kcal Atomic # 17 Polarization: -0.82 SS G_CDS: -0.08 Total: -0.90 kcal Total: -80.05 2.22 -77.82 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001752807716.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.555 kcal (2) G-P(sol) polarization free energy of solvation -80.046 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.491 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.223 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.823 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.268 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds