Wall clock time and date at job start Tue Mar 31 2020 15:44:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86800 * 119.99823 * 2 1 4 4 H 1.48499 * 109.47012 * 180.02562 * 3 2 1 5 5 H 1.48504 * 109.47325 * 299.99694 * 3 2 1 6 6 H 1.48494 * 109.47298 * 59.99635 * 3 2 1 7 7 C 1.38813 * 119.99952 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99533 * 179.97438 * 7 2 1 9 9 N 1.36932 * 120.00008 * 0.02562 * 7 2 1 10 10 C 1.46504 * 119.99722 * 179.97438 * 9 7 2 11 11 C 1.53003 * 109.46773 * 179.97438 * 10 9 7 12 12 H 1.09000 * 109.49539 * 55.07218 * 11 10 9 13 13 C 1.53041 * 109.51882 * 175.15021 * 11 10 9 14 14 C 1.53049 * 109.53420 * 181.33705 * 13 11 10 15 15 C 1.53626 * 109.23774 * 298.50717 * 14 13 11 16 16 N 1.46922 * 108.54351 * 54.85905 * 15 14 13 17 17 C 1.34780 * 120.63084 * 126.36356 * 16 15 14 18 18 O 1.21704 * 120.00205 * 186.21927 * 17 16 15 19 19 C 1.46575 * 120.00010 * 6.22376 * 17 16 15 20 20 C 1.36672 * 125.45335 * 211.06956 * 19 17 16 21 21 C 1.37525 * 113.28923 * 180.19865 * 20 19 17 22 22 Cl 1.73594 * 122.46399 * 179.82132 * 21 20 19 23 23 C 1.33874 * 115.07682 * 359.55268 * 21 20 19 24 24 S 1.70616 * 110.96079 * 0.24647 * 23 21 20 25 25 C 1.46925 * 118.74222 * 306.09400 * 16 15 14 26 26 H 0.97001 * 119.99966 * 0.02562 * 1 2 3 27 27 H 0.96997 * 120.00282 * 359.97438 * 9 7 2 28 28 H 1.09005 * 109.46639 * 60.00388 * 10 9 7 29 29 H 1.09001 * 109.47285 * 300.00342 * 10 9 7 30 30 H 1.08999 * 109.46097 * 301.34979 * 13 11 10 31 31 H 1.08997 * 109.46547 * 61.33261 * 13 11 10 32 32 H 1.08998 * 109.49711 * 58.58396 * 14 13 11 33 33 H 1.09006 * 109.49304 * 178.68522 * 14 13 11 34 34 H 1.09000 * 109.74202 * 295.11754 * 15 14 13 35 35 H 1.09005 * 109.66231 * 174.55398 * 15 14 13 36 36 H 1.08004 * 123.35215 * 359.97438 * 20 19 17 37 37 H 1.08008 * 124.52049 * 180.22520 * 23 21 20 38 38 H 1.09000 * 109.59141 * 173.64773 * 25 16 15 39 39 H 1.09005 * 109.58170 * 293.93107 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.7101 1.3464 -0.0006 5 1 1.8914 2.3965 -1.2126 6 1 1.8913 2.3965 1.2124 7 6 2.0102 -1.2022 0.0005 8 1 3.0903 -1.2021 0.0001 9 7 1.3256 -2.3880 0.0005 10 6 2.0581 -3.6568 0.0005 11 6 1.0639 -4.8197 0.0012 12 1 0.3800 -4.7141 -0.8410 13 6 1.8240 -6.1424 -0.1208 14 6 0.8279 -7.3039 -0.1537 15 6 0.0304 -7.3242 1.1592 16 7 -0.5875 -6.0051 1.3510 17 6 -1.9133 -5.8925 1.5658 18 8 -2.4313 -4.7921 1.6103 19 6 -2.7314 -7.0953 1.7458 20 6 -4.0432 -7.2233 1.3846 21 6 -4.5684 -8.4611 1.6730 22 17 -6.2154 -8.8801 1.3189 23 6 -3.7147 -9.3212 2.2419 24 16 -2.1801 -8.6067 2.4553 25 6 0.2681 -4.8114 1.3102 26 1 -0.4850 0.8401 -0.0004 27 1 0.3556 -2.3881 0.0005 28 1 2.6847 -3.7144 0.8906 29 1 2.6849 -3.7145 -0.8894 30 1 2.4104 -6.1408 -1.0396 31 1 2.4894 -6.2591 0.7346 32 1 0.1462 -7.1748 -0.9944 33 1 1.3687 -8.2439 -0.2640 34 1 0.6989 -7.5392 1.9928 35 1 -0.7463 -8.0871 1.1048 36 1 -4.6119 -6.4300 0.9221 37 1 -3.9641 -10.3324 2.5280 38 1 -0.3515 -3.9158 1.3555 39 1 0.9540 -4.8244 2.1573 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001752807717.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:44:35 Heat of formation + Delta-G solvation = 4.276227 kcal Electronic energy + Delta-G solvation = -23143.509935 eV Core-core repulsion = 19624.922000 eV Total energy + Delta-G solvation = -3518.587935 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 328.075 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.28234 -38.52620 -37.47094 -36.23237 -34.97619 -32.99541 -31.75069 -30.45707 -29.51499 -26.34244 -25.59947 -24.42784 -23.21094 -21.61790 -21.11498 -19.85562 -19.36239 -18.21743 -17.02332 -16.54011 -16.36491 -15.63555 -15.28086 -14.74718 -14.69387 -14.12860 -13.94702 -13.68084 -13.57504 -13.46212 -13.23113 -13.03532 -12.76546 -12.57944 -12.37633 -11.90068 -11.71970 -11.39621 -11.19054 -11.13521 -10.98651 -10.83581 -10.67602 -10.40861 -10.32609 -10.02346 -9.88977 -9.60402 -9.29399 -8.84941 -8.69187 -8.59026 -6.87541 -5.69965 -2.99975 0.12091 0.87624 1.18351 1.88636 2.16630 2.85716 3.07804 3.47048 3.51887 3.54819 4.26456 4.55281 4.60924 4.65673 4.80867 4.84750 4.93105 5.15399 5.24558 5.28627 5.33347 5.51993 5.61853 5.62997 5.72602 5.75528 5.80587 5.91777 6.06152 6.09969 6.18495 6.36520 6.50503 6.56951 6.76134 6.87053 7.33575 7.74834 8.09465 8.47562 9.58702 10.16404 10.50536 11.52291 Molecular weight = 328.08amu Principal moments of inertia in cm(-1) A = 0.018633 B = 0.002817 C = 0.002532 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1502.338382 B = 9936.050801 C =11054.700937 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.929 5.929 2 C -0.013 4.013 3 Si 0.906 3.094 4 H -0.281 1.281 5 H -0.292 1.292 6 H -0.292 1.292 7 C -0.242 4.242 8 H 0.070 0.930 9 N -0.734 5.734 10 C 0.161 3.839 11 C -0.108 4.108 12 H 0.075 0.925 13 C -0.113 4.113 14 C -0.130 4.130 15 C 0.093 3.907 16 N -0.605 5.605 17 C 0.584 3.416 18 O -0.508 6.508 19 C -0.246 4.246 20 C -0.059 4.059 21 C -0.055 4.055 22 Cl -0.049 7.049 23 C -0.252 4.252 24 S 0.263 5.737 25 C 0.122 3.878 26 H 0.255 0.745 27 H 0.385 0.615 28 H 0.020 0.980 29 H 0.022 0.978 30 H 0.068 0.932 31 H 0.065 0.935 32 H 0.069 0.931 33 H 0.075 0.925 34 H 0.075 0.925 35 H 0.082 0.918 36 H 0.163 0.837 37 H 0.177 0.823 38 H 0.106 0.894 39 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.603 -26.096 4.235 26.835 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.577 5.577 2 C -0.210 4.210 3 Si 0.737 3.263 4 H -0.206 1.206 5 H -0.219 1.219 6 H -0.219 1.219 7 C -0.373 4.373 8 H 0.088 0.912 9 N -0.378 5.378 10 C 0.033 3.967 11 C -0.127 4.127 12 H 0.094 0.906 13 C -0.151 4.151 14 C -0.168 4.168 15 C -0.032 4.032 16 N -0.339 5.339 17 C 0.369 3.631 18 O -0.384 6.384 19 C -0.367 4.367 20 C -0.092 4.092 21 C -0.095 4.095 22 Cl -0.021 7.021 23 C -0.390 4.390 24 S 0.530 5.470 25 C 0.001 3.999 26 H 0.065 0.935 27 H 0.219 0.781 28 H 0.038 0.962 29 H 0.040 0.960 30 H 0.087 0.913 31 H 0.084 0.916 32 H 0.087 0.913 33 H 0.094 0.906 34 H 0.094 0.906 35 H 0.100 0.900 36 H 0.180 0.820 37 H 0.195 0.805 38 H 0.125 0.875 39 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -3.537 -25.929 4.853 26.615 hybrid contribution -1.501 1.173 -0.643 2.011 sum -5.038 -24.755 4.210 25.611 Atomic orbital electron populations 1.69685 1.05051 1.25536 1.57409 1.24766 0.95499 0.97691 1.02994 0.86138 0.78716 0.84271 0.77169 1.20609 1.21916 1.21879 1.19237 0.90982 0.84150 1.42933 0.91179 1.42429 1.05974 0.99952 1.89485 1.20631 0.92918 0.85123 0.98053 1.21698 0.98017 0.95210 0.97796 0.90622 1.21537 0.97425 0.93614 1.02510 1.21957 0.98548 0.99392 0.96901 1.22225 0.97626 0.84385 0.98917 1.48033 1.06512 1.08424 1.70902 1.16920 0.81503 0.87066 0.77578 1.90937 1.71385 1.26182 1.49919 1.24629 0.99096 0.99797 1.13160 1.20506 0.93022 0.96601 0.99044 1.19530 0.88516 0.94901 1.06569 1.98374 1.16718 1.93231 1.93773 1.25480 0.99889 1.05856 1.07785 1.83322 1.06391 1.01652 1.55648 1.21811 0.93168 0.87457 0.97488 0.93519 0.78056 0.96219 0.95998 0.91282 0.91621 0.91272 0.90603 0.90634 0.90017 0.81978 0.80530 0.87548 0.91189 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.98 13.06 55.49 0.72 -28.26 16 2 C -0.01 -0.39 5.50 -17.43 -0.10 -0.48 16 3 Si 0.91 22.82 29.55 -169.99 -5.02 17.80 16 4 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 5 H -0.29 -7.39 7.11 56.52 0.40 -6.99 16 6 H -0.29 -7.39 7.11 56.52 0.40 -6.99 16 7 C -0.24 -6.87 9.99 -15.06 -0.15 -7.02 16 8 H 0.07 1.92 7.83 -52.48 -0.41 1.51 16 9 N -0.73 -18.83 5.38 -59.90 -0.32 -19.15 16 10 C 0.16 3.17 5.66 -4.04 -0.02 3.15 16 11 C -0.11 -1.70 2.37 -90.50 -0.21 -1.92 16 12 H 0.08 1.33 8.14 -51.93 -0.42 0.91 16 13 C -0.11 -1.29 5.17 -26.68 -0.14 -1.43 16 14 C -0.13 -1.21 6.10 -26.38 -0.16 -1.37 16 15 C 0.09 0.89 5.55 -3.49 -0.02 0.87 16 16 N -0.61 -8.37 2.97 -174.08 -0.52 -8.88 16 17 C 0.58 9.12 7.58 -12.90 -0.10 9.03 16 18 O -0.51 -10.35 16.41 5.19 0.09 -10.27 16 19 C -0.25 -2.96 5.73 -36.79 -0.21 -3.18 16 20 C -0.06 -0.69 10.02 -40.41 -0.40 -1.10 16 21 C -0.05 -0.54 6.25 -41.37 -0.26 -0.80 16 22 Cl -0.05 -0.46 29.10 -51.86 -1.51 -1.97 16 23 C -0.25 -1.96 10.77 29.20 0.31 -1.65 16 24 S 0.26 2.05 19.33 -107.50 -2.08 -0.02 16 25 C 0.12 1.99 5.52 -3.71 -0.02 1.97 16 26 H 0.25 7.69 8.31 -40.82 -0.34 7.35 16 27 H 0.39 10.61 6.89 -40.82 -0.28 10.33 16 28 H 0.02 0.39 8.14 -51.93 -0.42 -0.04 16 29 H 0.02 0.44 8.14 -51.93 -0.42 0.01 16 30 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 31 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 32 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 33 H 0.08 0.52 8.14 -51.93 -0.42 0.09 16 34 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 35 H 0.08 0.67 3.99 -26.26 -0.10 0.57 16 36 H 0.16 1.94 8.06 -52.48 -0.42 1.52 16 37 H 0.18 0.94 8.06 -52.48 -0.42 0.52 16 38 H 0.11 2.20 6.20 -51.93 -0.32 1.88 16 39 H 0.07 1.08 8.14 -51.93 -0.42 0.65 16 LS Contribution 345.93 15.07 5.21 5.21 Total: -1.00 -33.64 345.93 -9.81 -43.45 By element: Atomic # 1 Polarization: 10.92 SS G_CDS: -4.90 Total: 6.01 kcal Atomic # 6 Polarization: -2.45 SS G_CDS: -1.48 Total: -3.93 kcal Atomic # 7 Polarization: -56.17 SS G_CDS: -0.11 Total: -56.29 kcal Atomic # 8 Polarization: -10.35 SS G_CDS: 0.09 Total: -10.27 kcal Atomic # 14 Polarization: 22.82 SS G_CDS: -5.02 Total: 17.80 kcal Atomic # 16 Polarization: 2.05 SS G_CDS: -2.08 Total: -0.02 kcal Atomic # 17 Polarization: -0.46 SS G_CDS: -1.51 Total: -1.97 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -33.64 -9.81 -43.45 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001752807717.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.731 kcal (2) G-P(sol) polarization free energy of solvation -33.644 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.087 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.811 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.455 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.276 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds