Wall clock time and date at job start Tue Mar 31 2020 15:44:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86800 * 119.99823 * 2 1 4 4 H 1.48499 * 109.47012 * 180.02562 * 3 2 1 5 5 H 1.48504 * 109.47325 * 299.99694 * 3 2 1 6 6 H 1.48494 * 109.47298 * 59.99635 * 3 2 1 7 7 C 1.38813 * 119.99952 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99533 * 179.97438 * 7 2 1 9 9 N 1.36932 * 120.00008 * 0.02562 * 7 2 1 10 10 C 1.46504 * 119.99722 * 179.97438 * 9 7 2 11 11 C 1.53003 * 109.46773 * 179.97438 * 10 9 7 12 12 H 1.09000 * 109.49539 * 55.07218 * 11 10 9 13 13 C 1.53041 * 109.51882 * 175.15021 * 11 10 9 14 14 C 1.53049 * 109.53420 * 181.33705 * 13 11 10 15 15 C 1.53626 * 109.23774 * 298.50717 * 14 13 11 16 16 N 1.46922 * 108.54351 * 54.85905 * 15 14 13 17 17 C 1.34780 * 120.63084 * 126.36356 * 16 15 14 18 18 O 1.21704 * 120.00205 * 186.21927 * 17 16 15 19 19 C 1.46575 * 120.00010 * 6.22376 * 17 16 15 20 20 C 1.36672 * 125.45335 * 211.06956 * 19 17 16 21 21 C 1.37525 * 113.28923 * 180.19865 * 20 19 17 22 22 Cl 1.73594 * 122.46399 * 179.82132 * 21 20 19 23 23 C 1.33874 * 115.07682 * 359.55268 * 21 20 19 24 24 S 1.70616 * 110.96079 * 0.24647 * 23 21 20 25 25 C 1.46925 * 118.74222 * 306.09400 * 16 15 14 26 26 H 0.97001 * 119.99966 * 0.02562 * 1 2 3 27 27 H 0.96997 * 120.00282 * 359.97438 * 9 7 2 28 28 H 1.09005 * 109.46639 * 60.00388 * 10 9 7 29 29 H 1.09001 * 109.47285 * 300.00342 * 10 9 7 30 30 H 1.08999 * 109.46097 * 301.34979 * 13 11 10 31 31 H 1.08997 * 109.46547 * 61.33261 * 13 11 10 32 32 H 1.08998 * 109.49711 * 58.58396 * 14 13 11 33 33 H 1.09006 * 109.49304 * 178.68522 * 14 13 11 34 34 H 1.09000 * 109.74202 * 295.11754 * 15 14 13 35 35 H 1.09005 * 109.66231 * 174.55398 * 15 14 13 36 36 H 1.08004 * 123.35215 * 359.97438 * 20 19 17 37 37 H 1.08008 * 124.52049 * 180.22520 * 23 21 20 38 38 H 1.09000 * 109.59141 * 173.64773 * 25 16 15 39 39 H 1.09005 * 109.58170 * 293.93107 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.7101 1.3464 -0.0006 5 1 1.8914 2.3965 -1.2126 6 1 1.8913 2.3965 1.2124 7 6 2.0102 -1.2022 0.0005 8 1 3.0903 -1.2021 0.0001 9 7 1.3256 -2.3880 0.0005 10 6 2.0581 -3.6568 0.0005 11 6 1.0639 -4.8197 0.0012 12 1 0.3800 -4.7141 -0.8410 13 6 1.8240 -6.1424 -0.1208 14 6 0.8279 -7.3039 -0.1537 15 6 0.0304 -7.3242 1.1592 16 7 -0.5875 -6.0051 1.3510 17 6 -1.9133 -5.8925 1.5658 18 8 -2.4313 -4.7921 1.6103 19 6 -2.7314 -7.0953 1.7458 20 6 -4.0432 -7.2233 1.3846 21 6 -4.5684 -8.4611 1.6730 22 17 -6.2154 -8.8801 1.3189 23 6 -3.7147 -9.3212 2.2419 24 16 -2.1801 -8.6067 2.4553 25 6 0.2681 -4.8114 1.3102 26 1 -0.4850 0.8401 -0.0004 27 1 0.3556 -2.3881 0.0005 28 1 2.6847 -3.7144 0.8906 29 1 2.6849 -3.7145 -0.8894 30 1 2.4104 -6.1408 -1.0396 31 1 2.4894 -6.2591 0.7346 32 1 0.1462 -7.1748 -0.9944 33 1 1.3687 -8.2439 -0.2640 34 1 0.6989 -7.5392 1.9928 35 1 -0.7463 -8.0871 1.1048 36 1 -4.6119 -6.4300 0.9221 37 1 -3.9641 -10.3324 2.5280 38 1 -0.3515 -3.9158 1.3555 39 1 0.9540 -4.8244 2.1573 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001752807717.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:44:34 Heat of formation + Delta-G solvation = -17.883955 kcal Electronic energy + Delta-G solvation = -23144.470873 eV Core-core repulsion = 19624.922000 eV Total energy + Delta-G solvation = -3519.548873 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 328.075 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.41964 -39.41300 -38.60682 -37.00520 -36.65248 -34.55569 -33.11478 -31.81449 -30.75425 -27.56436 -27.00010 -25.40244 -24.90825 -22.77715 -22.30318 -21.00573 -20.22141 -19.31297 -18.99727 -17.50821 -17.30477 -16.73175 -16.66476 -16.36542 -15.71295 -15.43147 -15.35012 -14.98371 -14.80730 -14.39677 -14.31278 -14.14512 -14.02844 -13.77420 -13.71332 -13.03837 -12.95159 -12.79920 -12.47917 -12.38152 -12.16616 -12.03353 -11.96802 -11.93456 -11.77344 -11.58864 -11.33722 -11.12847 -10.97036 -10.13111 -9.72183 -9.36708 -9.00968 -7.94402 -5.24950 -0.69198 0.15765 0.41380 1.04415 1.40374 1.45378 1.47425 1.57533 1.79299 1.98600 2.55488 3.34164 3.38787 3.68750 3.83459 3.87382 3.91616 4.04249 4.10129 4.19391 4.25317 4.39324 4.51205 4.55211 4.75075 4.77031 4.81470 4.84882 4.87689 4.90615 5.04882 5.12504 5.22549 5.34831 5.41597 5.47584 5.51977 6.23369 6.26221 6.94104 7.31579 8.08618 8.30059 9.29282 Molecular weight = 328.08amu Principal moments of inertia in cm(-1) A = 0.018633 B = 0.002817 C = 0.002532 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1502.338382 B = 9936.050801 C =11054.700937 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.973 5.973 2 C -0.082 4.082 3 Si 0.977 3.023 4 H -0.261 1.261 5 H -0.294 1.294 6 H -0.295 1.295 7 C -0.243 4.243 8 H 0.081 0.919 9 N -0.750 5.750 10 C 0.158 3.842 11 C -0.096 4.096 12 H 0.048 0.952 13 C -0.106 4.106 14 C -0.124 4.124 15 C 0.084 3.916 16 N -0.601 5.601 17 C 0.577 3.423 18 O -0.578 6.578 19 C -0.289 4.289 20 C -0.064 4.064 21 C -0.076 4.076 22 Cl -0.050 7.050 23 C -0.232 4.232 24 S 0.353 5.647 25 C 0.128 3.872 26 H 0.249 0.751 27 H 0.370 0.630 28 H 0.031 0.969 29 H 0.028 0.972 30 H 0.078 0.922 31 H 0.085 0.915 32 H 0.055 0.945 33 H 0.119 0.881 34 H 0.106 0.894 35 H 0.099 0.901 36 H 0.141 0.859 37 H 0.211 0.789 38 H 0.051 0.949 39 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.304 -29.986 5.014 30.490 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.624 5.624 2 C -0.274 4.274 3 Si 0.806 3.194 4 H -0.185 1.185 5 H -0.222 1.222 6 H -0.222 1.222 7 C -0.374 4.374 8 H 0.099 0.901 9 N -0.393 5.393 10 C 0.031 3.969 11 C -0.115 4.115 12 H 0.067 0.933 13 C -0.144 4.144 14 C -0.162 4.162 15 C -0.038 4.038 16 N -0.333 5.333 17 C 0.365 3.635 18 O -0.459 6.459 19 C -0.409 4.409 20 C -0.098 4.098 21 C -0.116 4.116 22 Cl -0.021 7.021 23 C -0.370 4.370 24 S 0.621 5.379 25 C 0.006 3.994 26 H 0.058 0.942 27 H 0.201 0.799 28 H 0.049 0.951 29 H 0.046 0.954 30 H 0.096 0.904 31 H 0.104 0.896 32 H 0.074 0.926 33 H 0.137 0.863 34 H 0.124 0.876 35 H 0.116 0.884 36 H 0.159 0.841 37 H 0.228 0.772 38 H 0.070 0.930 39 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -1.159 -29.903 5.624 30.449 hybrid contribution -2.175 2.234 -0.861 3.235 sum -3.334 -27.668 4.763 28.273 Atomic orbital electron populations 1.69883 1.06930 1.25918 1.59659 1.25679 0.96343 1.01510 1.03856 0.85020 0.78367 0.79516 0.76531 1.18455 1.22169 1.22211 1.19717 0.91615 0.85253 1.40860 0.90091 1.42718 1.05565 1.01586 1.89399 1.20860 0.93555 0.84069 0.98385 1.21561 0.97040 0.96620 0.96328 0.93343 1.21529 0.97689 0.91276 1.03892 1.21975 0.97968 1.00258 0.96046 1.22653 0.98526 0.82158 1.00442 1.48103 1.05932 1.09386 1.69866 1.17487 0.82097 0.87462 0.76434 1.90891 1.72755 1.29130 1.53119 1.24328 0.99199 1.01176 1.16209 1.20488 0.93098 0.97180 0.99047 1.19422 0.89099 0.94649 1.08391 1.98371 1.16762 1.93064 1.93932 1.25966 0.99477 1.06760 1.04794 1.82872 1.05072 0.97228 1.52749 1.21495 0.92706 0.86921 0.98296 0.94191 0.79852 0.95097 0.95404 0.90354 0.89618 0.92597 0.86273 0.87560 0.88390 0.84083 0.77177 0.93021 0.89945 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -63.59 13.06 21.65 0.28 -63.31 16 2 C -0.08 -4.94 5.50 84.86 0.47 -4.47 16 3 Si 0.98 47.90 29.55 68.60 2.03 49.92 16 4 H -0.26 -11.75 7.11 99.48 0.71 -11.04 16 5 H -0.29 -14.43 7.11 99.48 0.71 -13.72 16 6 H -0.29 -14.49 7.11 99.48 0.71 -13.78 16 7 C -0.24 -14.02 9.99 84.03 0.84 -13.18 16 8 H 0.08 4.41 7.83 -2.91 -0.02 4.38 16 9 N -0.75 -40.00 5.38 -343.43 -1.85 -41.85 16 10 C 0.16 6.25 5.66 86.38 0.49 6.74 16 11 C -0.10 -3.06 2.37 -10.72 -0.03 -3.09 16 12 H 0.05 1.80 8.14 -2.39 -0.02 1.78 16 13 C -0.11 -2.13 5.17 30.62 0.16 -1.97 16 14 C -0.12 -1.86 6.10 30.82 0.19 -1.68 16 15 C 0.08 1.34 5.55 86.51 0.48 1.82 16 16 N -0.60 -16.68 2.97 -822.88 -2.44 -19.13 16 17 C 0.58 19.08 7.58 86.42 0.65 19.74 16 18 O -0.58 -26.13 16.41 -4.36 -0.07 -26.20 16 19 C -0.29 -6.93 5.73 24.08 0.14 -6.79 16 20 C -0.06 -1.55 10.02 21.73 0.22 -1.33 16 21 C -0.08 -1.39 6.25 21.11 0.13 -1.26 16 22 Cl -0.05 -0.89 29.10 -2.72 -0.08 -0.96 16 23 C -0.23 -2.77 10.77 66.83 0.72 -2.05 16 24 S 0.35 4.24 19.33 -56.49 -1.09 3.15 16 25 C 0.13 4.37 5.52 86.36 0.48 4.84 16 26 H 0.25 15.78 8.31 -92.71 -0.77 15.01 16 27 H 0.37 21.82 6.89 -92.71 -0.64 21.18 16 28 H 0.03 1.17 8.14 -2.38 -0.02 1.15 16 29 H 0.03 1.09 8.14 -2.39 -0.02 1.07 16 30 H 0.08 1.48 8.14 -2.39 -0.02 1.46 16 31 H 0.09 1.44 8.14 -2.39 -0.02 1.42 16 32 H 0.06 1.02 8.14 -2.39 -0.02 1.00 16 33 H 0.12 0.90 8.14 -2.38 -0.02 0.88 16 34 H 0.11 1.14 8.14 -2.39 -0.02 1.12 16 35 H 0.10 1.23 3.99 -18.70 -0.07 1.15 16 36 H 0.14 3.83 8.06 -2.91 -0.02 3.80 16 37 H 0.21 1.12 8.06 -2.91 -0.02 1.10 16 38 H 0.05 2.35 6.20 -2.39 -0.01 2.34 16 39 H 0.08 2.54 8.14 -2.38 -0.02 2.52 16 Total: -1.00 -80.34 345.93 2.09 -78.25 By element: Atomic # 1 Polarization: 22.44 SS G_CDS: 0.38 Total: 22.81 kcal Atomic # 6 Polarization: -7.62 SS G_CDS: 4.94 Total: -2.68 kcal Atomic # 7 Polarization: -120.28 SS G_CDS: -4.00 Total: -124.28 kcal Atomic # 8 Polarization: -26.13 SS G_CDS: -0.07 Total: -26.20 kcal Atomic # 14 Polarization: 47.90 SS G_CDS: 2.03 Total: 49.92 kcal Atomic # 16 Polarization: 4.24 SS G_CDS: -1.09 Total: 3.15 kcal Atomic # 17 Polarization: -0.89 SS G_CDS: -0.08 Total: -0.96 kcal Total: -80.34 2.09 -78.25 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001752807717.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.363 kcal (2) G-P(sol) polarization free energy of solvation -80.340 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.977 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.093 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.247 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.884 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds