Wall clock time and date at job start Tue Mar 31 2020 15:41:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86800 * 120.00259 * 2 1 4 4 H 1.48508 * 109.46685 * 89.99762 * 3 2 1 5 5 H 1.48494 * 109.47357 * 209.99841 * 3 2 1 6 6 H 1.48502 * 109.47120 * 330.00560 * 3 2 1 7 7 C 1.38816 * 119.99569 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99460 * 180.02562 * 7 2 1 9 9 N 1.36935 * 120.00401 * 0.02562 * 7 2 1 10 10 C 1.46490 * 120.00121 * 180.02562 * 9 7 2 11 11 C 1.53001 * 109.47264 * 179.97438 * 10 9 7 12 12 H 1.09007 * 110.88434 * 51.11772 * 11 10 9 13 13 C 1.55155 * 111.00412 * 287.19518 * 11 10 9 14 14 C 1.54327 * 102.94065 * 206.41899 * 13 11 10 15 15 N 1.47025 * 107.27126 * 22.19595 * 14 13 11 16 16 C 1.34777 * 125.65018 * 181.09053 * 15 14 13 17 17 O 1.21273 * 120.00178 * 179.97438 * 16 15 14 18 18 C 1.50702 * 119.99376 * 359.95742 * 16 15 14 19 19 C 1.50703 * 109.46717 * 179.97438 * 18 16 15 20 20 C 1.33347 * 125.18945 * 89.72283 * 19 18 16 21 21 C 1.38471 * 114.93285 * 179.79661 * 20 19 18 22 22 C 1.33500 * 114.88448 * 0.49594 * 21 20 19 23 23 Cl 1.73592 * 125.20997 * 179.71484 * 22 21 20 24 24 S 1.75878 * 125.19149 * 270.02849 * 19 18 16 25 25 C 1.47425 * 108.70149 * 1.05494 * 15 14 13 26 26 H 0.97001 * 119.99885 * 179.97438 * 1 2 3 27 27 H 0.97000 * 119.99302 * 359.97438 * 9 7 2 28 28 H 1.09003 * 109.47433 * 299.99456 * 10 9 7 29 29 H 1.08999 * 109.47686 * 59.99159 * 10 9 7 30 30 H 1.08996 * 110.71895 * 324.78612 * 13 11 10 31 31 H 1.09001 * 110.72006 * 88.05773 * 13 11 10 32 32 H 1.09000 * 109.88574 * 262.77402 * 14 13 11 33 33 H 1.09001 * 110.00464 * 141.68047 * 14 13 11 34 34 H 1.08991 * 109.47628 * 299.99386 * 18 16 15 35 35 H 1.09004 * 109.47361 * 60.00359 * 18 16 15 36 36 H 1.08005 * 122.53138 * 359.97266 * 20 19 18 37 37 H 1.08001 * 122.55872 * 180.23156 * 21 20 19 38 38 H 1.09001 * 110.36548 * 217.02965 * 25 15 14 39 39 H 1.09001 * 110.46206 * 94.75830 * 25 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4977 2.0463 1.4002 5 1 3.5478 1.4401 -0.7000 6 1 1.4477 2.6527 -0.6999 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0001 9 7 1.3256 -2.3881 -0.0016 10 6 2.0580 -3.6568 -0.0016 11 6 1.0637 -4.8197 -0.0022 12 1 0.3256 -4.6995 -0.7953 13 6 0.3763 -4.9645 1.3812 14 6 0.0006 -6.4606 1.4255 15 7 0.8814 -7.1602 0.4788 16 6 0.8550 -8.4806 0.2099 17 8 1.6319 -8.9516 -0.5934 18 6 -0.1399 -9.3717 0.9079 19 6 0.0373 -10.7910 0.4329 20 6 0.8511 -11.6906 0.9865 21 6 0.8444 -12.9353 0.3797 22 6 0.0316 -13.0422 -0.6740 23 17 -0.1796 -14.4729 -1.6340 24 16 -0.7920 -11.5111 -0.9407 25 6 1.7979 -6.1779 -0.1284 26 1 -0.4850 -0.8401 -0.0004 27 1 0.3556 -2.3880 -0.0016 28 1 2.6853 -3.7142 -0.8912 29 1 2.6841 -3.7150 0.8887 30 1 1.0704 -4.7171 2.1844 31 1 -0.5161 -4.3409 1.4355 32 1 -1.0402 -6.5905 1.1288 33 1 0.1510 -6.8532 2.4312 34 1 0.0236 -9.3256 1.9845 35 1 -1.1515 -9.0361 0.6792 36 1 1.4668 -11.4663 1.8451 37 1 1.4536 -13.7557 0.7294 38 1 1.9720 -6.4192 -1.1770 39 1 2.7421 -6.1507 0.4156 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001752957235.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:41:47 Heat of formation + Delta-G solvation = 3.760522 kcal Electronic energy + Delta-G solvation = -22163.895076 eV Core-core repulsion = 18645.284778 eV Total energy + Delta-G solvation = -3518.610298 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 328.075 amu Computer time = 1.87 seconds Orbital eigenvalues (eV) -40.27787 -38.49850 -37.66398 -36.87972 -34.98642 -32.87407 -32.05118 -30.19142 -29.13096 -27.41068 -25.13314 -23.78974 -22.94675 -22.59642 -20.22088 -19.99444 -19.41476 -17.77391 -17.45337 -17.17306 -16.55569 -15.99227 -15.53331 -14.89215 -14.46673 -14.04393 -13.93090 -13.80160 -13.75172 -13.45983 -13.31206 -13.23536 -12.85938 -12.71081 -12.56788 -12.12324 -11.86313 -11.78470 -11.43506 -11.05898 -11.03853 -10.84593 -10.71601 -10.55234 -10.44778 -10.07862 -10.02619 -9.21902 -8.91980 -8.90205 -8.84090 -8.75921 -7.04762 -6.14268 -3.14230 0.43054 0.76319 1.46881 1.88434 2.23499 2.44013 2.87375 3.49989 3.54665 3.68770 4.17546 4.29807 4.59139 4.61221 4.66575 4.79443 4.89955 4.95359 5.02763 5.15167 5.17841 5.32907 5.48504 5.55830 5.58413 5.70958 5.77360 5.86930 5.88111 5.89232 5.97224 6.06214 6.18896 6.27952 6.59761 6.69990 7.35819 7.77915 7.97628 8.72214 9.18620 10.04961 10.19475 11.34378 Molecular weight = 328.08amu Principal moments of inertia in cm(-1) A = 0.043423 B = 0.001838 C = 0.001832 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 644.666103 B =15231.783030 C =15277.902474 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.944 5.944 2 C -0.045 4.045 3 Si 1.083 2.917 4 H -0.295 1.295 5 H -0.295 1.295 6 H -0.288 1.288 7 C -0.332 4.332 8 H 0.065 0.935 9 N -0.742 5.742 10 C 0.170 3.830 11 C -0.107 4.107 12 H 0.084 0.916 13 C -0.121 4.121 14 C 0.097 3.903 15 N -0.616 5.616 16 C 0.527 3.473 17 O -0.531 6.531 18 C -0.068 4.068 19 C -0.151 4.151 20 C -0.121 4.121 21 C -0.115 4.115 22 C -0.152 4.152 23 Cl -0.018 7.018 24 S 0.165 5.835 25 C 0.114 3.886 26 H 0.254 0.746 27 H 0.367 0.633 28 H 0.023 0.977 29 H 0.024 0.976 30 H 0.080 0.920 31 H 0.085 0.915 32 H 0.068 0.932 33 H 0.069 0.931 34 H 0.116 0.884 35 H 0.106 0.894 36 H 0.147 0.853 37 H 0.149 0.851 38 H 0.078 0.922 39 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.968 -27.264 3.847 27.694 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.590 5.590 2 C -0.243 4.243 3 Si 0.914 3.086 4 H -0.223 1.223 5 H -0.221 1.221 6 H -0.214 1.214 7 C -0.463 4.463 8 H 0.083 0.917 9 N -0.388 5.388 10 C 0.042 3.958 11 C -0.127 4.127 12 H 0.102 0.898 13 C -0.159 4.159 14 C -0.026 4.026 15 N -0.351 5.351 16 C 0.314 3.686 17 O -0.407 6.407 18 C -0.110 4.110 19 C -0.270 4.270 20 C -0.151 4.151 21 C -0.147 4.147 22 C -0.296 4.296 23 Cl 0.011 6.989 24 S 0.428 5.572 25 C -0.008 4.008 26 H 0.066 0.934 27 H 0.200 0.800 28 H 0.041 0.959 29 H 0.042 0.958 30 H 0.099 0.901 31 H 0.104 0.896 32 H 0.087 0.913 33 H 0.087 0.913 34 H 0.134 0.866 35 H 0.125 0.875 36 H 0.165 0.835 37 H 0.166 0.834 38 H 0.097 0.903 39 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -3.546 -25.579 2.236 25.920 hybrid contribution 0.937 -2.329 0.971 2.691 sum -2.609 -27.908 3.207 28.212 Atomic orbital electron populations 1.70865 1.06032 1.28355 1.53729 1.25788 0.97065 1.01023 1.00412 0.83188 0.73902 0.75270 0.76248 1.22301 1.22138 1.21368 1.20062 0.92095 0.85754 1.48377 0.91688 1.42312 1.04839 1.00816 1.90810 1.20482 0.92633 0.84353 0.98330 1.22597 0.98668 0.93916 0.97504 0.89784 1.22660 1.02061 0.93072 0.98139 1.22183 0.94050 0.93711 0.92647 1.48533 1.36813 1.06545 1.43194 1.20018 0.84879 0.80946 0.82752 1.90746 1.41423 1.73644 1.34920 1.20173 1.00395 0.88390 1.02003 1.23902 1.03823 0.98879 1.00353 1.19898 1.00393 0.92019 1.02786 1.20137 1.00098 0.99095 0.95373 1.25214 1.08482 0.94260 1.01629 1.98366 1.96407 1.34418 1.69740 1.84401 1.42608 1.00575 1.29601 1.22247 0.92734 0.86745 0.99118 0.93440 0.80005 0.95909 0.95842 0.90129 0.89637 0.91345 0.91295 0.86603 0.87546 0.83546 0.83377 0.90350 0.91075 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 39. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -28.69 13.70 55.49 0.76 -27.93 16 2 C -0.05 -1.30 5.50 -17.43 -0.10 -1.40 16 3 Si 1.08 25.67 29.92 -169.99 -5.09 20.59 16 4 H -0.30 -6.78 7.11 56.52 0.40 -6.38 16 5 H -0.29 -6.62 7.11 56.52 0.40 -6.22 16 6 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 7 C -0.33 -9.24 9.99 -15.06 -0.15 -9.39 16 8 H 0.07 1.79 7.83 -52.49 -0.41 1.38 16 9 N -0.74 -18.03 5.55 -59.91 -0.33 -18.37 16 10 C 0.17 3.26 5.71 -4.05 -0.02 3.23 16 11 C -0.11 -1.59 3.05 -88.47 -0.27 -1.86 16 12 H 0.08 1.31 8.14 -51.92 -0.42 0.89 16 13 C -0.12 -1.52 6.37 -24.90 -0.16 -1.68 16 14 C 0.10 0.94 6.49 -3.06 -0.02 0.92 16 15 N -0.62 -7.36 3.33 -170.52 -0.57 -7.93 16 16 C 0.53 6.50 7.84 -10.98 -0.09 6.41 16 17 O -0.53 -8.63 16.29 5.56 0.09 -8.54 16 18 C -0.07 -0.57 5.39 -29.03 -0.16 -0.72 16 19 C -0.15 -1.45 5.00 -36.02 -0.18 -1.63 16 20 C -0.12 -1.08 10.05 -41.20 -0.41 -1.50 16 21 C -0.11 -1.02 10.13 -41.15 -0.42 -1.43 16 22 C -0.15 -1.47 7.10 29.07 0.21 -1.26 16 23 Cl -0.02 -0.16 29.29 -51.86 -1.52 -1.68 16 24 S 0.16 1.61 23.33 -107.50 -2.51 -0.89 16 25 C 0.11 1.55 6.38 -2.53 -0.02 1.53 16 26 H 0.25 7.55 6.77 -40.82 -0.28 7.27 16 27 H 0.37 9.01 6.50 -40.82 -0.27 8.74 16 28 H 0.02 0.46 8.14 -51.93 -0.42 0.03 16 29 H 0.02 0.46 7.97 -51.93 -0.41 0.04 16 30 H 0.08 1.05 7.91 -51.93 -0.41 0.64 16 31 H 0.09 1.11 8.14 -51.93 -0.42 0.68 16 32 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 33 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 34 H 0.12 0.68 8.14 -51.93 -0.42 0.25 16 35 H 0.11 0.70 8.14 -51.93 -0.42 0.28 16 36 H 0.15 1.05 8.06 -52.48 -0.42 0.62 16 37 H 0.15 1.02 8.06 -52.49 -0.42 0.60 16 38 H 0.08 1.14 8.04 -51.93 -0.42 0.72 16 39 H 0.07 0.95 8.03 -51.93 -0.42 0.54 16 LS Contribution 357.86 15.07 5.39 5.39 Total: -1.00 -33.53 357.86 -10.76 -44.29 By element: Atomic # 1 Polarization: 9.06 SS G_CDS: -5.21 Total: 3.84 kcal Atomic # 6 Polarization: -7.00 SS G_CDS: -1.78 Total: -8.78 kcal Atomic # 7 Polarization: -54.09 SS G_CDS: -0.14 Total: -54.23 kcal Atomic # 8 Polarization: -8.63 SS G_CDS: 0.09 Total: -8.54 kcal Atomic # 14 Polarization: 25.67 SS G_CDS: -5.09 Total: 20.59 kcal Atomic # 16 Polarization: 1.61 SS G_CDS: -2.51 Total: -0.89 kcal Atomic # 17 Polarization: -0.16 SS G_CDS: -1.52 Total: -1.68 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -33.53 -10.76 -44.29 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001752957235.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.050 kcal (2) G-P(sol) polarization free energy of solvation -33.528 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.522 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.761 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.290 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.761 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.87 seconds