Wall clock time and date at job start Tue Mar 31 2020 15:41:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86800 * 120.00259 * 2 1 4 4 H 1.48508 * 109.46685 * 89.99762 * 3 2 1 5 5 H 1.48494 * 109.47357 * 209.99841 * 3 2 1 6 6 H 1.48502 * 109.47120 * 330.00560 * 3 2 1 7 7 C 1.38816 * 119.99569 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99460 * 180.02562 * 7 2 1 9 9 N 1.36935 * 120.00401 * 0.02562 * 7 2 1 10 10 C 1.46490 * 120.00121 * 180.02562 * 9 7 2 11 11 C 1.53001 * 109.47264 * 179.97438 * 10 9 7 12 12 H 1.09007 * 110.88434 * 51.11772 * 11 10 9 13 13 C 1.55155 * 111.00412 * 287.19518 * 11 10 9 14 14 C 1.54327 * 102.94065 * 206.41899 * 13 11 10 15 15 N 1.47025 * 107.27126 * 22.19595 * 14 13 11 16 16 C 1.34777 * 125.65018 * 181.09053 * 15 14 13 17 17 O 1.21273 * 120.00178 * 179.97438 * 16 15 14 18 18 C 1.50702 * 119.99376 * 359.95742 * 16 15 14 19 19 C 1.50703 * 109.46717 * 179.97438 * 18 16 15 20 20 C 1.33347 * 125.18945 * 89.72283 * 19 18 16 21 21 C 1.38471 * 114.93285 * 179.79661 * 20 19 18 22 22 C 1.33500 * 114.88448 * 0.49594 * 21 20 19 23 23 Cl 1.73592 * 125.20997 * 179.71484 * 22 21 20 24 24 S 1.75878 * 125.19149 * 270.02849 * 19 18 16 25 25 C 1.47425 * 108.70149 * 1.05494 * 15 14 13 26 26 H 0.97001 * 119.99885 * 179.97438 * 1 2 3 27 27 H 0.97000 * 119.99302 * 359.97438 * 9 7 2 28 28 H 1.09003 * 109.47433 * 299.99456 * 10 9 7 29 29 H 1.08999 * 109.47686 * 59.99159 * 10 9 7 30 30 H 1.08996 * 110.71895 * 324.78612 * 13 11 10 31 31 H 1.09001 * 110.72006 * 88.05773 * 13 11 10 32 32 H 1.09000 * 109.88574 * 262.77402 * 14 13 11 33 33 H 1.09001 * 110.00464 * 141.68047 * 14 13 11 34 34 H 1.08991 * 109.47628 * 299.99386 * 18 16 15 35 35 H 1.09004 * 109.47361 * 60.00359 * 18 16 15 36 36 H 1.08005 * 122.53138 * 359.97266 * 20 19 18 37 37 H 1.08001 * 122.55872 * 180.23156 * 21 20 19 38 38 H 1.09001 * 110.36548 * 217.02965 * 25 15 14 39 39 H 1.09001 * 110.46206 * 94.75830 * 25 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4977 2.0463 1.4002 5 1 3.5478 1.4401 -0.7000 6 1 1.4477 2.6527 -0.6999 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0001 9 7 1.3256 -2.3881 -0.0016 10 6 2.0580 -3.6568 -0.0016 11 6 1.0637 -4.8197 -0.0022 12 1 0.3256 -4.6995 -0.7953 13 6 0.3763 -4.9645 1.3812 14 6 0.0006 -6.4606 1.4255 15 7 0.8814 -7.1602 0.4788 16 6 0.8550 -8.4806 0.2099 17 8 1.6319 -8.9516 -0.5934 18 6 -0.1399 -9.3717 0.9079 19 6 0.0373 -10.7910 0.4329 20 6 0.8511 -11.6906 0.9865 21 6 0.8444 -12.9353 0.3797 22 6 0.0316 -13.0422 -0.6740 23 17 -0.1796 -14.4729 -1.6340 24 16 -0.7920 -11.5111 -0.9407 25 6 1.7979 -6.1779 -0.1284 26 1 -0.4850 -0.8401 -0.0004 27 1 0.3556 -2.3880 -0.0016 28 1 2.6853 -3.7142 -0.8912 29 1 2.6841 -3.7150 0.8887 30 1 1.0704 -4.7171 2.1844 31 1 -0.5161 -4.3409 1.4355 32 1 -1.0402 -6.5905 1.1288 33 1 0.1510 -6.8532 2.4312 34 1 0.0236 -9.3256 1.9845 35 1 -1.1515 -9.0361 0.6792 36 1 1.4668 -11.4663 1.8451 37 1 1.4536 -13.7557 0.7294 38 1 1.9720 -6.4192 -1.1770 39 1 2.7421 -6.1507 0.4156 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001752957235.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:41:47 Heat of formation + Delta-G solvation = -16.316476 kcal Electronic energy + Delta-G solvation = -22164.765680 eV Core-core repulsion = 18645.284778 eV Total energy + Delta-G solvation = -3519.480902 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 328.075 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.24434 -39.33050 -38.62601 -37.59366 -36.73985 -34.18069 -33.12304 -31.63893 -30.27636 -28.28903 -26.63132 -24.94811 -24.22089 -23.82403 -21.47669 -20.75436 -20.23003 -19.37359 -18.49353 -18.24800 -17.61056 -16.82106 -16.46506 -16.30205 -15.90937 -15.60723 -15.09405 -14.93632 -14.67631 -14.59521 -14.19574 -14.05771 -13.95739 -13.75127 -13.64675 -13.07989 -12.81165 -12.74521 -12.60440 -12.50140 -12.21324 -12.08573 -11.88271 -11.86580 -11.73332 -11.69554 -11.27461 -11.04931 -10.92829 -9.72775 -9.60357 -9.53884 -9.10989 -8.39761 -5.33746 -0.26581 0.08122 0.78907 1.19253 1.52685 1.55440 1.59721 1.69865 1.84237 1.98791 2.71067 3.29984 3.40289 3.51561 3.58676 3.71490 3.84163 4.07937 4.16106 4.26503 4.29699 4.33714 4.45434 4.49895 4.55053 4.60654 4.74447 4.79174 4.91131 4.93589 5.00661 5.06408 5.16029 5.19365 5.32517 5.33734 5.59025 6.45232 6.51060 7.05128 7.09704 8.00034 8.10334 9.12636 Molecular weight = 328.08amu Principal moments of inertia in cm(-1) A = 0.043423 B = 0.001838 C = 0.001832 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 644.666103 B =15231.783030 C =15277.902474 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.974 5.974 2 C -0.102 4.102 3 Si 1.129 2.871 4 H -0.283 1.283 5 H -0.276 1.276 6 H -0.293 1.293 7 C -0.336 4.336 8 H 0.064 0.936 9 N -0.753 5.753 10 C 0.170 3.830 11 C -0.099 4.099 12 H 0.074 0.926 13 C -0.119 4.119 14 C 0.102 3.898 15 N -0.616 5.616 16 C 0.524 3.476 17 O -0.578 6.578 18 C -0.060 4.060 19 C -0.159 4.159 20 C -0.124 4.124 21 C -0.116 4.116 22 C -0.165 4.165 23 Cl -0.016 7.016 24 S 0.138 5.862 25 C 0.120 3.880 26 H 0.246 0.754 27 H 0.363 0.637 28 H 0.014 0.986 29 H 0.027 0.973 30 H 0.076 0.924 31 H 0.080 0.920 32 H 0.091 0.909 33 H 0.102 0.898 34 H 0.151 0.849 35 H 0.128 0.872 36 H 0.167 0.833 37 H 0.166 0.834 38 H 0.063 0.937 39 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.881 -28.139 5.471 28.810 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.622 5.622 2 C -0.294 4.294 3 Si 0.954 3.046 4 H -0.209 1.209 5 H -0.201 1.201 6 H -0.220 1.220 7 C -0.468 4.468 8 H 0.082 0.918 9 N -0.397 5.397 10 C 0.043 3.957 11 C -0.118 4.118 12 H 0.093 0.907 13 C -0.157 4.157 14 C -0.019 4.019 15 N -0.350 5.350 16 C 0.314 3.686 17 O -0.457 6.457 18 C -0.101 4.101 19 C -0.278 4.278 20 C -0.154 4.154 21 C -0.148 4.148 22 C -0.309 4.309 23 Cl 0.012 6.988 24 S 0.402 5.598 25 C -0.003 4.003 26 H 0.056 0.944 27 H 0.196 0.804 28 H 0.032 0.968 29 H 0.045 0.955 30 H 0.094 0.906 31 H 0.099 0.901 32 H 0.110 0.890 33 H 0.120 0.880 34 H 0.168 0.832 35 H 0.146 0.854 36 H 0.184 0.816 37 H 0.184 0.816 38 H 0.082 0.918 39 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -3.458 -26.493 3.879 26.998 hybrid contribution 0.970 -2.121 0.447 2.375 sum -2.488 -28.614 4.325 29.046 Atomic orbital electron populations 1.70966 1.07055 1.28006 1.56135 1.27172 0.97179 1.04552 1.00489 0.82594 0.73464 0.71597 0.76927 1.20935 1.20141 1.21962 1.20400 0.92360 0.87163 1.46842 0.91767 1.42474 1.04877 1.01691 1.90700 1.20583 0.93364 0.84046 0.97732 1.22361 0.97646 0.92823 0.99019 0.90736 1.22615 1.01434 0.95514 0.96109 1.22304 0.94628 0.91110 0.93870 1.48588 1.36660 1.06461 1.43275 1.20728 0.84838 0.80958 0.82120 1.90729 1.43511 1.74416 1.37067 1.20271 1.00029 0.86541 1.03300 1.24123 1.04019 0.99633 1.00001 1.20209 1.00136 0.91821 1.03254 1.20436 0.99714 0.99780 0.94872 1.25348 1.09053 0.94272 1.02205 1.98361 1.96438 1.34210 1.69772 1.84435 1.43367 1.01368 1.30661 1.22017 0.93161 0.86519 0.98607 0.94367 0.80443 0.96837 0.95532 0.90555 0.90126 0.89048 0.87988 0.83180 0.85377 0.81566 0.81608 0.91831 0.90918 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -59.72 13.70 21.65 0.30 -59.42 16 2 C -0.10 -5.87 5.50 84.86 0.47 -5.41 16 3 Si 1.13 51.38 29.92 68.60 2.05 53.43 16 4 H -0.28 -12.20 7.11 99.48 0.71 -11.49 16 5 H -0.28 -11.57 7.11 99.48 0.71 -10.86 16 6 H -0.29 -13.52 7.11 99.48 0.71 -12.82 16 7 C -0.34 -18.75 9.99 84.03 0.84 -17.91 16 8 H 0.06 3.52 7.83 -2.91 -0.02 3.50 16 9 N -0.75 -36.90 5.55 -343.47 -1.90 -38.80 16 10 C 0.17 6.52 5.71 86.38 0.49 7.01 16 11 C -0.10 -2.88 3.05 -9.40 -0.03 -2.91 16 12 H 0.07 2.33 8.14 -2.38 -0.02 2.31 16 13 C -0.12 -2.77 6.37 31.78 0.20 -2.57 16 14 C 0.10 1.62 6.49 86.73 0.56 2.18 16 15 N -0.62 -13.31 3.33 -811.78 -2.70 -16.01 16 16 C 0.52 11.80 7.84 87.66 0.69 12.49 16 17 O -0.58 -18.34 16.29 -3.01 -0.05 -18.39 16 18 C -0.06 -0.80 5.39 29.10 0.16 -0.65 16 19 C -0.16 -2.71 5.00 24.58 0.12 -2.59 16 20 C -0.12 -1.94 10.05 21.22 0.21 -1.73 16 21 C -0.12 -1.86 10.13 21.25 0.22 -1.64 16 22 C -0.17 -3.04 7.10 66.75 0.47 -2.57 16 23 Cl -0.02 -0.28 29.29 -2.72 -0.08 -0.36 16 24 S 0.14 2.60 23.33 -56.49 -1.32 1.28 16 25 C 0.12 3.18 6.38 86.85 0.55 3.73 16 26 H 0.25 14.88 6.77 -92.71 -0.63 14.25 16 27 H 0.36 18.14 6.50 -92.71 -0.60 17.54 16 28 H 0.01 0.55 8.14 -2.39 -0.02 0.53 16 29 H 0.03 1.02 7.97 -2.39 -0.02 1.00 16 30 H 0.08 1.85 7.91 -2.39 -0.02 1.84 16 31 H 0.08 1.98 8.14 -2.39 -0.02 1.96 16 32 H 0.09 1.10 8.14 -2.39 -0.02 1.08 16 33 H 0.10 1.04 8.14 -2.39 -0.02 1.02 16 34 H 0.15 0.99 8.14 -2.39 -0.02 0.98 16 35 H 0.13 1.19 8.14 -2.38 -0.02 1.17 16 36 H 0.17 1.85 8.06 -2.91 -0.02 1.82 16 37 H 0.17 1.95 8.06 -2.91 -0.02 1.93 16 38 H 0.06 1.86 8.04 -2.39 -0.02 1.84 16 39 H 0.07 1.89 8.03 -2.39 -0.02 1.87 16 Total: -1.00 -73.22 357.86 1.86 -71.35 By element: Atomic # 1 Polarization: 18.86 SS G_CDS: 0.61 Total: 19.46 kcal Atomic # 6 Polarization: -17.50 SS G_CDS: 4.96 Total: -12.54 kcal Atomic # 7 Polarization: -109.92 SS G_CDS: -4.31 Total: -114.23 kcal Atomic # 8 Polarization: -18.34 SS G_CDS: -0.05 Total: -18.39 kcal Atomic # 14 Polarization: 51.38 SS G_CDS: 2.05 Total: 53.43 kcal Atomic # 16 Polarization: 2.60 SS G_CDS: -1.32 Total: 1.28 kcal Atomic # 17 Polarization: -0.28 SS G_CDS: -0.08 Total: -0.36 kcal Total: -73.22 1.86 -71.35 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001752957235.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.034 kcal (2) G-P(sol) polarization free energy of solvation -73.215 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.181 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.865 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.351 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.316 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds