Wall clock time and date at job start Tue Mar 31 2020 15:21:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86807 * 119.99426 * 2 1 4 4 H 1.48501 * 109.46631 * 180.02562 * 3 2 1 5 5 H 1.48501 * 109.47088 * 299.99934 * 3 2 1 6 6 H 1.48497 * 109.46923 * 60.00141 * 3 2 1 7 7 C 1.38810 * 120.00356 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00150 * 180.02562 * 7 2 1 9 9 N 1.36941 * 120.00010 * 359.97438 * 7 2 1 10 10 C 1.47569 * 134.49184 * 179.97438 * 9 7 2 11 11 C 1.53944 * 86.11910 * 155.36006 * 10 9 7 12 12 O 1.42897 * 113.74368 * 269.15869 * 11 10 9 13 13 C 1.52999 * 113.74348 * 137.94691 * 11 10 9 14 14 N 1.46500 * 109.47528 * 185.00351 * 13 11 10 15 15 C 1.34773 * 120.00431 * 180.02562 * 14 13 11 16 16 O 1.21583 * 119.99900 * 359.97438 * 15 14 13 17 17 C 1.47629 * 119.99962 * 179.72724 * 15 14 13 18 18 C 1.39698 * 120.15698 * 359.97438 * 17 15 14 19 19 C 1.37788 * 119.89450 * 179.69802 * 18 17 15 20 20 C 1.38617 * 120.20062 * 0.60799 * 19 18 17 21 21 Cl 1.73602 * 119.84107 * 179.69462 * 20 19 18 22 22 C 1.38355 * 120.31674 * 359.66993 * 20 19 18 23 23 C 1.38260 * 120.09812 * 0.02600 * 22 20 19 24 24 F 1.35104 * 120.09846 * 179.97438 * 23 22 20 25 25 C 1.47580 * 134.49100 * 0.02562 * 9 7 2 26 26 H 0.96999 * 120.00906 * 359.97438 * 1 2 3 27 27 H 1.09007 * 113.77355 * 41.05957 * 10 9 7 28 28 H 1.09006 * 113.77299 * 269.66052 * 10 9 7 29 29 H 0.96703 * 114.00122 * 178.07842 * 12 11 10 30 30 H 1.09009 * 109.47054 * 65.00646 * 13 11 10 31 31 H 1.08998 * 109.47782 * 305.01108 * 13 11 10 32 32 H 0.97000 * 119.99456 * 0.02562 * 14 13 11 33 33 H 1.08005 * 120.04829 * 0.02562 * 18 17 15 34 34 H 1.07998 * 119.90179 * 180.27593 * 19 18 17 35 35 H 1.07996 * 119.94929 * 180.02562 * 22 20 19 36 36 H 1.08997 * 113.77512 * 90.33297 * 25 9 7 37 37 H 1.09002 * 113.76914 * 318.93218 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6179 0.0000 4 1 3.7101 1.3466 -0.0006 5 1 1.8913 2.3965 -1.2125 6 1 1.8913 2.3965 1.2125 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2020 -0.0001 9 7 1.3257 -2.3881 -0.0005 10 6 1.7204 -3.8100 -0.0015 11 6 0.3478 -4.0833 0.6398 12 8 0.3651 -4.0589 2.0685 13 6 -0.3632 -5.3137 0.0727 14 7 -1.7018 -5.4176 0.6587 15 6 -2.5156 -6.4319 0.3047 16 8 -2.1388 -7.2606 -0.5013 17 6 -3.8623 -6.5399 0.8998 18 6 -4.2964 -5.5928 1.8305 19 6 -5.5567 -5.6953 2.3778 20 6 -6.3905 -6.7424 2.0172 21 17 -7.9736 -6.8669 2.7186 22 6 -5.9672 -7.6884 1.1006 23 6 -4.7074 -7.5943 0.5388 24 9 -4.2938 -8.5184 -0.3559 25 6 -0.1031 -2.7575 -0.0005 26 1 -0.4851 0.8400 0.0004 27 1 2.5632 -4.0326 0.6530 28 1 1.8314 -4.2346 -0.9993 29 1 -0.5008 -4.2010 2.4748 30 1 0.2101 -6.2085 0.3154 31 1 -0.4468 -5.2183 -1.0098 32 1 -2.0025 -4.7562 1.3015 33 1 -3.6470 -4.7786 2.1165 34 1 -5.8940 -4.9607 3.0939 35 1 -6.6218 -8.5014 0.8236 36 1 -0.5271 -2.8730 -0.9980 37 1 -0.7167 -2.1393 0.6548 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754770220.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:21:14 Heat of formation + Delta-G solvation = -42.883566 kcal Electronic energy + Delta-G solvation = -24949.084631 eV Core-core repulsion = 20862.238518 eV Total energy + Delta-G solvation = -4086.846113 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 328.078 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -49.19270 -40.41354 -39.19963 -38.40685 -36.92744 -35.01748 -34.17099 -32.13167 -31.69890 -31.05509 -28.56369 -26.20635 -25.06833 -24.24051 -23.24867 -21.94322 -20.83809 -19.45533 -18.82910 -17.74779 -17.18642 -16.78072 -16.14929 -16.11826 -15.74696 -15.56748 -15.20696 -14.98915 -14.67715 -14.07202 -13.99592 -13.81894 -13.69977 -13.48953 -13.18078 -12.87340 -12.73127 -12.31360 -12.08481 -11.90776 -11.70780 -11.54349 -11.11365 -10.97900 -10.80194 -10.47646 -10.17897 -9.82776 -9.58668 -9.56919 -9.35258 -9.21584 -9.00010 -8.86793 -6.94349 -5.81546 -3.13208 0.08550 0.57342 1.45533 2.40388 2.90696 3.25104 3.37005 3.42518 3.44858 3.71740 4.07671 4.29916 4.38988 4.39764 4.45887 4.57544 4.88586 4.93220 5.14965 5.20888 5.27051 5.41442 5.49115 5.53303 5.54665 5.67906 5.95819 6.10166 6.20914 6.32281 6.45790 6.50566 6.95203 7.10494 7.28733 7.45387 7.91702 7.99508 8.07607 8.99707 9.66006 10.51325 11.35900 Molecular weight = 328.08amu Principal moments of inertia in cm(-1) A = 0.017942 B = 0.002638 C = 0.002394 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1560.179662 B =10610.209679 C =11693.351459 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.923 5.923 2 C -0.008 4.008 3 Si 0.914 3.086 4 H -0.279 1.279 5 H -0.291 1.291 6 H -0.290 1.290 7 C -0.218 4.218 8 H 0.082 0.918 9 N -0.602 5.602 10 C 0.136 3.864 11 C 0.062 3.938 12 O -0.524 6.524 13 C 0.103 3.897 14 N -0.715 5.715 15 C 0.557 3.443 16 O -0.523 6.523 17 C -0.165 4.165 18 C -0.043 4.043 19 C -0.127 4.127 20 C 0.014 3.986 21 Cl -0.050 7.050 22 C -0.159 4.159 23 C 0.174 3.826 24 F -0.106 7.106 25 C 0.144 3.856 26 H 0.253 0.747 27 H 0.056 0.944 28 H 0.051 0.949 29 H 0.360 0.640 30 H 0.074 0.926 31 H 0.083 0.917 32 H 0.398 0.602 33 H 0.150 0.850 34 H 0.150 0.850 35 H 0.153 0.847 36 H 0.035 0.965 37 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.150 -14.708 6.032 21.960 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.205 4.205 3 Si 0.744 3.256 4 H -0.204 1.204 5 H -0.218 1.218 6 H -0.217 1.217 7 C -0.345 4.345 8 H 0.100 0.900 9 N -0.328 5.328 10 C 0.010 3.990 11 C 0.020 3.980 12 O -0.328 6.328 13 C -0.021 4.021 14 N -0.368 5.368 15 C 0.343 3.657 16 O -0.399 6.399 17 C -0.170 4.170 18 C -0.062 4.062 19 C -0.146 4.146 20 C -0.013 4.013 21 Cl -0.021 7.021 22 C -0.179 4.179 23 C 0.153 3.847 24 F -0.084 7.084 25 C 0.018 3.982 26 H 0.063 0.937 27 H 0.074 0.926 28 H 0.069 0.931 29 H 0.206 0.794 30 H 0.092 0.908 31 H 0.101 0.899 32 H 0.234 0.766 33 H 0.167 0.833 34 H 0.167 0.833 35 H 0.171 0.829 36 H 0.052 0.948 37 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -14.258 -14.869 5.361 21.287 hybrid contribution -0.487 1.010 0.158 1.132 sum -14.745 -13.859 5.520 20.975 Atomic orbital electron populations 1.69798 1.05028 1.25228 1.56996 1.24767 0.95724 0.97546 1.02427 0.86017 0.78780 0.83557 0.77233 1.20424 1.21759 1.21675 1.19049 0.90340 0.81680 1.43471 0.90029 1.45665 1.01941 0.99195 1.85981 1.22554 0.93298 0.86630 0.96550 1.23798 0.99337 0.93277 0.81628 1.86641 1.33412 1.95144 1.17576 1.22131 0.81219 0.99595 0.99198 1.45809 1.16417 1.28240 1.46359 1.17847 0.83990 0.81877 0.82003 1.90860 1.75266 1.40441 1.33376 1.20244 0.96246 0.97949 1.02523 1.21253 0.95434 0.96755 0.92733 1.21091 0.93384 0.98160 1.01950 1.20848 0.88078 0.96206 0.96200 1.98411 1.23357 1.97713 1.82645 1.20969 0.95780 1.01743 0.99395 1.17420 0.91766 0.86867 0.88669 1.91639 1.90046 1.62794 1.63955 1.22916 0.89021 0.89060 0.97224 0.93734 0.92565 0.93143 0.79409 0.90765 0.89925 0.76647 0.83270 0.83275 0.82930 0.94758 0.90353 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.69 11.38 55.49 0.63 -26.06 16 2 C -0.01 -0.24 5.50 -17.43 -0.10 -0.33 16 3 Si 0.91 21.98 29.55 -169.99 -5.02 16.95 16 4 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 5 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 6 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 7 C -0.22 -6.08 10.70 -15.06 -0.16 -6.24 16 8 H 0.08 2.21 7.83 -52.49 -0.41 1.80 16 9 N -0.60 -15.18 3.70 -177.80 -0.66 -15.83 16 10 C 0.14 2.73 8.34 -2.98 -0.02 2.71 16 11 C 0.06 1.09 1.52 -89.67 -0.14 0.95 16 12 O -0.52 -9.01 13.51 -35.23 -0.48 -9.48 16 13 C 0.10 1.50 5.28 -4.04 -0.02 1.47 16 14 N -0.72 -8.76 5.29 -61.32 -0.32 -9.08 16 15 C 0.56 7.57 7.77 -12.43 -0.10 7.47 16 16 O -0.52 -9.09 15.34 5.29 0.08 -9.00 16 17 C -0.17 -1.78 5.88 -104.91 -0.62 -2.40 16 18 C -0.04 -0.33 9.54 -39.20 -0.37 -0.70 16 19 C -0.13 -0.87 9.81 -39.61 -0.39 -1.26 16 20 C 0.01 0.11 6.32 -39.40 -0.25 -0.14 16 21 Cl -0.05 -0.35 28.95 -51.86 -1.50 -1.85 16 22 C -0.16 -1.34 9.79 -39.53 -0.39 -1.72 16 23 C 0.17 1.90 7.28 -38.97 -0.28 1.62 16 24 F -0.11 -1.42 15.55 2.25 0.04 -1.38 16 25 C 0.14 3.16 6.92 -2.95 -0.02 3.14 16 26 H 0.25 7.08 8.31 -40.82 -0.34 6.74 16 27 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 28 H 0.05 0.93 8.10 -51.93 -0.42 0.51 16 29 H 0.36 4.41 7.61 45.56 0.35 4.75 16 30 H 0.07 1.07 8.14 -51.92 -0.42 0.65 16 31 H 0.08 1.27 8.04 -51.93 -0.42 0.86 16 32 H 0.40 3.85 5.34 -40.82 -0.22 3.64 16 33 H 0.15 0.81 6.40 -52.48 -0.34 0.47 16 34 H 0.15 0.71 8.06 -52.49 -0.42 0.29 16 35 H 0.15 1.01 8.06 -52.49 -0.42 0.58 16 36 H 0.03 0.77 8.03 -51.93 -0.42 0.36 16 37 H 0.08 1.89 7.15 -51.93 -0.37 1.52 16 LS Contribution 338.44 15.07 5.10 5.10 Total: -1.00 -34.50 338.44 -8.06 -42.56 By element: Atomic # 1 Polarization: 6.59 SS G_CDS: -3.07 Total: 3.52 kcal Atomic # 6 Polarization: 7.41 SS G_CDS: -2.86 Total: 4.55 kcal Atomic # 7 Polarization: -50.62 SS G_CDS: -0.35 Total: -50.97 kcal Atomic # 8 Polarization: -18.09 SS G_CDS: -0.39 Total: -18.49 kcal Atomic # 9 Polarization: -1.42 SS G_CDS: 0.04 Total: -1.38 kcal Atomic # 14 Polarization: 21.98 SS G_CDS: -5.02 Total: 16.95 kcal Atomic # 17 Polarization: -0.35 SS G_CDS: -1.50 Total: -1.85 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -34.50 -8.06 -42.56 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754770220.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.320 kcal (2) G-P(sol) polarization free energy of solvation -34.503 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.823 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.060 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.563 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.884 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds