Wall clock time and date at job start Tue Mar 31 2020 15:21:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86807 * 119.99426 * 2 1 4 4 H 1.48501 * 109.46631 * 180.02562 * 3 2 1 5 5 H 1.48501 * 109.47088 * 299.99934 * 3 2 1 6 6 H 1.48497 * 109.46923 * 60.00141 * 3 2 1 7 7 C 1.38810 * 120.00356 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00150 * 180.02562 * 7 2 1 9 9 N 1.36941 * 120.00010 * 359.97438 * 7 2 1 10 10 C 1.47569 * 134.49184 * 179.97438 * 9 7 2 11 11 C 1.53944 * 86.11910 * 155.36006 * 10 9 7 12 12 O 1.42897 * 113.74368 * 269.15869 * 11 10 9 13 13 C 1.52999 * 113.74348 * 137.94691 * 11 10 9 14 14 N 1.46500 * 109.47528 * 185.00351 * 13 11 10 15 15 C 1.34773 * 120.00431 * 180.02562 * 14 13 11 16 16 O 1.21583 * 119.99900 * 359.97438 * 15 14 13 17 17 C 1.47629 * 119.99962 * 179.72724 * 15 14 13 18 18 C 1.39698 * 120.15698 * 359.97438 * 17 15 14 19 19 C 1.37788 * 119.89450 * 179.69802 * 18 17 15 20 20 C 1.38617 * 120.20062 * 0.60799 * 19 18 17 21 21 Cl 1.73602 * 119.84107 * 179.69462 * 20 19 18 22 22 C 1.38355 * 120.31674 * 359.66993 * 20 19 18 23 23 C 1.38260 * 120.09812 * 0.02600 * 22 20 19 24 24 F 1.35104 * 120.09846 * 179.97438 * 23 22 20 25 25 C 1.47580 * 134.49100 * 0.02562 * 9 7 2 26 26 H 0.96999 * 120.00906 * 359.97438 * 1 2 3 27 27 H 1.09007 * 113.77355 * 41.05957 * 10 9 7 28 28 H 1.09006 * 113.77299 * 269.66052 * 10 9 7 29 29 H 0.96703 * 114.00122 * 178.07842 * 12 11 10 30 30 H 1.09009 * 109.47054 * 65.00646 * 13 11 10 31 31 H 1.08998 * 109.47782 * 305.01108 * 13 11 10 32 32 H 0.97000 * 119.99456 * 0.02562 * 14 13 11 33 33 H 1.08005 * 120.04829 * 0.02562 * 18 17 15 34 34 H 1.07998 * 119.90179 * 180.27593 * 19 18 17 35 35 H 1.07996 * 119.94929 * 180.02562 * 22 20 19 36 36 H 1.08997 * 113.77512 * 90.33297 * 25 9 7 37 37 H 1.09002 * 113.76914 * 318.93218 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6179 0.0000 4 1 3.7101 1.3466 -0.0006 5 1 1.8913 2.3965 -1.2125 6 1 1.8913 2.3965 1.2125 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2020 -0.0001 9 7 1.3257 -2.3881 -0.0005 10 6 1.7204 -3.8100 -0.0015 11 6 0.3478 -4.0833 0.6398 12 8 0.3651 -4.0589 2.0685 13 6 -0.3632 -5.3137 0.0727 14 7 -1.7018 -5.4176 0.6587 15 6 -2.5156 -6.4319 0.3047 16 8 -2.1388 -7.2606 -0.5013 17 6 -3.8623 -6.5399 0.8998 18 6 -4.2964 -5.5928 1.8305 19 6 -5.5567 -5.6953 2.3778 20 6 -6.3905 -6.7424 2.0172 21 17 -7.9736 -6.8669 2.7186 22 6 -5.9672 -7.6884 1.1006 23 6 -4.7074 -7.5943 0.5388 24 9 -4.2938 -8.5184 -0.3559 25 6 -0.1031 -2.7575 -0.0005 26 1 -0.4851 0.8400 0.0004 27 1 2.5632 -4.0326 0.6530 28 1 1.8314 -4.2346 -0.9993 29 1 -0.5008 -4.2010 2.4748 30 1 0.2101 -6.2085 0.3154 31 1 -0.4468 -5.2183 -1.0098 32 1 -2.0025 -4.7562 1.3015 33 1 -3.6470 -4.7786 2.1165 34 1 -5.8940 -4.9607 3.0939 35 1 -6.6218 -8.5014 0.8236 36 1 -0.5271 -2.8730 -0.9980 37 1 -0.7167 -2.1393 0.6548 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001754770220.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:21:13 Heat of formation + Delta-G solvation = -68.163275 kcal Electronic energy + Delta-G solvation = -24950.180842 eV Core-core repulsion = 20862.238518 eV Total energy + Delta-G solvation = -4087.942324 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 328.078 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -50.06695 -41.45166 -40.42745 -39.46156 -37.54460 -36.53445 -35.40938 -34.02134 -32.56747 -31.74445 -30.13666 -27.80488 -26.74138 -25.16039 -24.12767 -23.45085 -21.85456 -20.99521 -19.77941 -18.81280 -18.49337 -18.02450 -17.35410 -17.02980 -16.95432 -16.72007 -16.29777 -16.21704 -15.81278 -15.73365 -15.31507 -14.83811 -14.64050 -14.59944 -14.34180 -14.26876 -13.87895 -13.58604 -13.44667 -12.96333 -12.85213 -12.76072 -12.54801 -12.42927 -12.18257 -12.11029 -11.77982 -11.47686 -11.11213 -10.96962 -10.72700 -10.34713 -10.18160 -9.87201 -8.92499 -7.90720 -5.22953 -0.65039 -0.07415 0.84951 1.46809 1.47143 1.54819 1.57359 1.87798 2.43016 2.46874 2.99835 3.05813 3.28078 3.33069 3.42592 3.47178 3.62601 3.80579 3.88609 3.91247 4.28692 4.35978 4.56064 4.69733 4.73966 4.78548 4.79890 4.87698 4.94007 4.95644 5.17614 5.18860 5.33566 5.43521 5.50550 5.93236 6.29713 6.83382 6.92900 7.01406 7.59870 8.52975 9.26006 Molecular weight = 328.08amu Principal moments of inertia in cm(-1) A = 0.017942 B = 0.002638 C = 0.002394 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1560.179662 B =10610.209679 C =11693.351459 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.950 5.950 2 C -0.064 4.064 3 Si 0.977 3.023 4 H -0.268 1.268 5 H -0.292 1.292 6 H -0.290 1.290 7 C -0.233 4.233 8 H 0.081 0.919 9 N -0.636 5.636 10 C 0.128 3.872 11 C 0.100 3.900 12 O -0.538 6.538 13 C 0.117 3.883 14 N -0.705 5.705 15 C 0.557 3.443 16 O -0.567 6.567 17 C -0.181 4.181 18 C -0.034 4.034 19 C -0.117 4.117 20 C 0.015 3.985 21 Cl -0.040 7.040 22 C -0.154 4.154 23 C 0.149 3.851 24 F -0.128 7.128 25 C 0.143 3.857 26 H 0.249 0.751 27 H 0.058 0.942 28 H 0.071 0.929 29 H 0.383 0.617 30 H 0.083 0.917 31 H 0.075 0.925 32 H 0.411 0.589 33 H 0.174 0.826 34 H 0.178 0.822 35 H 0.167 0.833 36 H 0.026 0.974 37 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.958 -14.680 7.445 22.925 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.599 5.599 2 C -0.258 4.258 3 Si 0.806 3.194 4 H -0.193 1.193 5 H -0.219 1.219 6 H -0.217 1.217 7 C -0.361 4.361 8 H 0.099 0.901 9 N -0.362 5.362 10 C 0.003 3.997 11 C 0.057 3.943 12 O -0.344 6.344 13 C -0.007 4.007 14 N -0.358 5.358 15 C 0.345 3.655 16 O -0.447 6.447 17 C -0.186 4.186 18 C -0.052 4.052 19 C -0.135 4.135 20 C -0.012 4.012 21 Cl -0.011 7.011 22 C -0.174 4.174 23 C 0.129 3.871 24 F -0.106 7.106 25 C 0.017 3.983 26 H 0.058 0.942 27 H 0.076 0.924 28 H 0.089 0.911 29 H 0.233 0.767 30 H 0.101 0.899 31 H 0.093 0.907 32 H 0.250 0.750 33 H 0.191 0.809 34 H 0.195 0.805 35 H 0.185 0.815 36 H 0.044 0.956 37 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -15.081 -14.858 6.809 22.238 hybrid contribution -0.308 0.970 -0.215 1.040 sum -15.388 -13.888 6.594 21.752 Atomic orbital electron populations 1.69958 1.06170 1.25517 1.58207 1.25560 0.96674 1.00599 1.02926 0.85026 0.78129 0.79504 0.76750 1.19292 1.21945 1.21703 1.19393 0.90773 0.83265 1.42683 0.90145 1.46049 1.03583 1.00356 1.86224 1.22799 0.94830 0.84158 0.97925 1.23124 0.97307 0.92150 0.81725 1.86593 1.35611 1.95109 1.17108 1.21806 0.82203 0.98113 0.98627 1.45635 1.15481 1.28416 1.46301 1.18238 0.84855 0.81107 0.81265 1.90836 1.76330 1.42078 1.35452 1.20119 0.94950 0.99373 1.04116 1.21504 0.96092 0.96277 0.91370 1.21426 0.92585 0.98039 1.01496 1.20991 0.88546 0.96022 0.95650 1.98423 1.22662 1.97671 1.82340 1.21077 0.94915 1.02316 0.99051 1.17721 0.92961 0.87083 0.89365 1.91579 1.90432 1.63675 1.64950 1.22872 0.87498 0.91191 0.96735 0.94218 0.92352 0.91122 0.76750 0.89884 0.90655 0.75030 0.80865 0.80502 0.81546 0.95614 0.92775 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -55.54 11.38 21.65 0.25 -55.29 16 2 C -0.06 -3.63 5.50 84.86 0.47 -3.17 16 3 Si 0.98 45.36 29.55 68.60 2.03 47.39 16 4 H -0.27 -11.83 7.11 99.48 0.71 -11.12 16 5 H -0.29 -13.54 7.11 99.48 0.71 -12.83 16 6 H -0.29 -13.36 7.11 99.48 0.71 -12.66 16 7 C -0.23 -13.06 10.70 84.03 0.90 -12.16 16 8 H 0.08 4.37 7.83 -2.91 -0.02 4.34 16 9 N -0.64 -32.10 3.70 -720.26 -2.66 -34.76 16 10 C 0.13 5.04 8.34 86.48 0.72 5.76 16 11 C 0.10 3.37 1.52 -10.12 -0.02 3.35 16 12 O -0.54 -17.44 13.51 -148.98 -2.01 -19.45 16 13 C 0.12 3.26 5.28 86.38 0.46 3.72 16 14 N -0.70 -16.23 5.29 -466.17 -2.46 -18.70 16 15 C 0.56 14.81 7.77 86.72 0.67 15.49 16 16 O -0.57 -19.92 15.34 -3.98 -0.06 -19.98 16 17 C -0.18 -3.72 5.88 -20.05 -0.12 -3.84 16 18 C -0.03 -0.43 9.54 22.52 0.21 -0.22 16 19 C -0.12 -1.23 9.81 22.25 0.22 -1.02 16 20 C 0.02 0.20 6.32 22.39 0.14 0.34 16 21 Cl -0.04 -0.46 28.95 -2.72 -0.08 -0.54 16 22 C -0.15 -2.38 9.79 22.30 0.22 -2.16 16 23 C 0.15 3.21 7.28 22.67 0.17 3.38 16 24 F -0.13 -3.52 15.55 44.97 0.70 -2.82 16 25 C 0.14 6.29 6.92 86.49 0.60 6.89 16 26 H 0.25 14.10 8.31 -92.71 -0.77 13.33 16 27 H 0.06 2.26 8.14 -2.38 -0.02 2.24 16 28 H 0.07 2.51 8.10 -2.38 -0.02 2.49 16 29 H 0.38 8.38 7.61 -74.06 -0.56 7.81 16 30 H 0.08 2.25 8.14 -2.38 -0.02 2.23 16 31 H 0.08 2.26 8.04 -2.39 -0.02 2.24 16 32 H 0.41 7.07 5.34 -92.71 -0.49 6.57 16 33 H 0.17 1.28 6.40 -2.91 -0.02 1.26 16 34 H 0.18 0.92 8.06 -2.91 -0.02 0.89 16 35 H 0.17 1.98 8.06 -2.91 -0.02 1.96 16 36 H 0.03 1.18 8.03 -2.39 -0.02 1.16 16 37 H 0.05 2.63 7.15 -2.39 -0.02 2.62 16 Total: -1.00 -75.68 338.44 0.42 -75.26 By element: Atomic # 1 Polarization: 12.44 SS G_CDS: 0.09 Total: 12.53 kcal Atomic # 6 Polarization: 11.72 SS G_CDS: 4.64 Total: 16.36 kcal Atomic # 7 Polarization: -103.87 SS G_CDS: -4.88 Total: -108.75 kcal Atomic # 8 Polarization: -37.36 SS G_CDS: -2.07 Total: -39.44 kcal Atomic # 9 Polarization: -3.52 SS G_CDS: 0.70 Total: -2.82 kcal Atomic # 14 Polarization: 45.36 SS G_CDS: 2.03 Total: 47.39 kcal Atomic # 17 Polarization: -0.46 SS G_CDS: -0.08 Total: -0.54 kcal Total: -75.68 0.42 -75.26 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754770220.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.096 kcal (2) G-P(sol) polarization free energy of solvation -75.683 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.587 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.424 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.260 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.163 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds