Wall clock time and date at job start Tue Mar 31 2020 15:23:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86795 * 120.00107 * 2 1 4 4 H 1.48498 * 109.47397 * 235.08466 * 3 2 1 5 5 H 1.48501 * 109.47238 * 355.08147 * 3 2 1 6 6 H 1.48502 * 109.47311 * 115.08342 * 3 2 1 7 7 C 1.38815 * 119.99778 * 179.72251 * 2 1 3 8 8 H 1.07993 * 119.99977 * 352.53261 * 7 2 1 9 9 N 1.36930 * 119.99694 * 172.52700 * 7 2 1 10 10 C 1.47069 * 136.06266 * 6.44515 * 9 7 2 11 11 C 1.53755 * 87.88849 * 152.95924 * 10 9 7 12 12 O 1.42901 * 114.57796 * 272.66178 * 11 10 9 13 13 C 1.53000 * 114.08295 * 139.78275 * 11 10 9 14 14 N 1.46506 * 109.47164 * 86.56312 * 13 11 10 15 15 C 1.34779 * 119.99876 * 179.97438 * 14 13 11 16 16 O 1.21572 * 119.99931 * 0.02562 * 15 14 13 17 17 C 1.47718 * 120.00069 * 179.97438 * 15 14 13 18 18 C 1.39666 * 120.11530 * 359.72590 * 17 15 14 19 19 C 1.37830 * 119.90603 * 179.79260 * 18 17 15 20 20 C 1.38637 * 120.13507 * 0.48168 * 19 18 17 21 21 F 1.35105 * 119.88864 * 179.72574 * 20 19 18 22 22 C 1.38742 * 120.22649 * 359.74858 * 20 19 18 23 23 Cl 1.73602 * 119.95296 * 180.02562 * 22 20 19 24 24 C 1.37964 * 120.09741 * 0.02562 * 22 20 19 25 25 C 1.47074 * 136.05482 * 186.80721 * 9 7 2 26 26 H 0.96996 * 119.99886 * 184.77407 * 1 2 3 27 27 H 1.08992 * 113.46878 * 267.69605 * 10 9 7 28 28 H 1.09002 * 113.46558 * 38.13037 * 10 9 7 29 29 H 0.96698 * 114.00651 * 273.67882 * 12 11 10 30 30 H 1.09001 * 109.46898 * 206.55720 * 13 11 10 31 31 H 1.09002 * 109.47563 * 326.55919 * 13 11 10 32 32 H 0.96993 * 120.00149 * 359.97438 * 14 13 11 33 33 H 1.08007 * 120.04215 * 0.02562 * 18 17 15 34 34 H 1.08000 * 119.93564 * 180.23135 * 19 18 17 35 35 H 1.07998 * 120.06896 * 180.02562 * 24 22 20 36 36 H 1.08994 * 113.47170 * 321.87267 * 25 9 7 37 37 H 1.09001 * 113.46026 * 92.25391 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1918 1.6457 -1.1480 5 1 1.2898 2.7439 -0.1200 6 1 3.0118 1.7496 1.2680 7 6 2.0103 -1.2022 0.0058 8 1 1.4771 -2.1328 0.1319 9 7 3.3708 -1.2079 -0.1484 10 6 4.4323 -0.1929 -0.2249 11 6 5.4046 -1.2503 0.3233 12 8 5.4623 -1.3222 1.7493 13 6 6.7844 -1.2320 -0.3375 14 7 7.6430 -0.2652 0.3513 15 6 8.9127 -0.0785 -0.0603 16 8 9.3454 -0.7119 -1.0034 17 6 9.7783 0.8967 0.6339 18 6 9.2816 1.6306 1.7134 19 6 10.0944 2.5363 2.3607 20 6 11.4002 2.7272 1.9360 21 9 12.1908 3.6203 2.5706 22 6 11.8979 2.0046 0.8613 23 17 13.5344 2.2488 0.3359 24 6 11.0941 1.0922 0.2094 25 6 4.4132 -2.2318 -0.3168 26 1 -0.4850 -0.8371 0.0699 27 1 4.6608 0.1202 -1.2436 28 1 4.2777 0.6486 0.4505 29 1 6.0877 -0.7026 2.1495 30 1 7.2309 -2.2244 -0.2739 31 1 6.6822 -0.9460 -1.3844 32 1 7.2977 0.2404 1.1036 33 1 8.2633 1.4859 2.0428 34 1 9.7119 3.1014 3.1978 35 1 11.4821 0.5297 -0.6269 36 1 4.2423 -3.1275 0.2804 37 1 4.6359 -2.4569 -1.3598 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754772397.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:23:58 Heat of formation + Delta-G solvation = -32.968949 kcal Electronic energy + Delta-G solvation = -24845.965463 eV Core-core repulsion = 20759.549280 eV Total energy + Delta-G solvation = -4086.416183 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 328.078 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -49.55333 -40.75435 -39.56555 -38.53224 -37.02724 -35.46936 -34.41562 -32.36709 -31.65254 -31.46960 -28.95174 -26.28907 -25.62014 -24.12924 -23.65259 -21.61814 -21.00880 -19.75435 -19.07652 -18.10739 -17.59568 -17.32978 -16.57779 -16.36148 -15.98429 -15.92382 -15.50820 -15.09293 -14.60575 -14.55302 -14.07368 -13.98229 -13.91063 -13.55217 -13.42546 -13.30059 -13.14146 -12.77017 -12.22091 -12.04027 -11.98890 -11.70593 -11.52639 -11.09877 -10.62963 -10.51325 -10.21496 -10.16586 -9.68751 -9.50293 -9.28129 -9.26666 -9.02260 -8.92074 -7.22395 -6.36881 -3.27384 -0.00928 0.41024 1.41819 2.20705 2.71918 3.13226 3.30672 3.36051 3.39563 3.57854 3.96055 4.07715 4.17216 4.29723 4.45639 4.49216 4.53423 4.66212 4.83763 4.93895 5.12318 5.25181 5.34740 5.39814 5.45533 5.49209 5.70923 5.89107 5.94794 6.02587 6.04689 6.15983 6.26568 6.44114 7.00748 7.06063 7.70857 7.82979 8.19171 8.92601 9.44087 10.27686 11.16082 Molecular weight = 328.08amu Principal moments of inertia in cm(-1) A = 0.021484 B = 0.002675 C = 0.002504 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1302.975308 B =10464.212345 C =11180.476660 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C -0.026 4.026 3 Si 1.073 2.927 4 H -0.288 1.288 5 H -0.294 1.294 6 H -0.294 1.294 7 C -0.301 4.301 8 H 0.084 0.916 9 N -0.617 5.617 10 C 0.077 3.923 11 C 0.069 3.931 12 O -0.517 6.517 13 C 0.105 3.895 14 N -0.720 5.720 15 C 0.562 3.438 16 O -0.528 6.528 17 C -0.131 4.131 18 C -0.052 4.052 19 C -0.146 4.146 20 C 0.134 3.866 21 F -0.121 7.121 22 C -0.084 4.084 23 Cl -0.041 7.041 24 C -0.023 4.023 25 C 0.140 3.860 26 H 0.261 0.739 27 H 0.055 0.945 28 H 0.055 0.945 29 H 0.361 0.639 30 H 0.081 0.919 31 H 0.087 0.913 32 H 0.397 0.603 33 H 0.146 0.854 34 H 0.155 0.845 35 H 0.158 0.842 36 H 0.058 0.942 37 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 26.143 5.096 4.228 26.968 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.225 4.225 3 Si 0.906 3.094 4 H -0.215 1.215 5 H -0.222 1.222 6 H -0.223 1.223 7 C -0.427 4.427 8 H 0.102 0.898 9 N -0.345 5.345 10 C -0.049 4.049 11 C 0.026 3.974 12 O -0.320 6.320 13 C -0.019 4.019 14 N -0.373 5.373 15 C 0.349 3.651 16 O -0.405 6.405 17 C -0.134 4.134 18 C -0.071 4.071 19 C -0.164 4.164 20 C 0.114 3.886 21 F -0.099 7.099 22 C -0.112 4.112 23 Cl -0.012 7.012 24 C -0.042 4.042 25 C 0.013 3.987 26 H 0.072 0.928 27 H 0.073 0.927 28 H 0.073 0.927 29 H 0.207 0.793 30 H 0.100 0.900 31 H 0.105 0.895 32 H 0.233 0.767 33 H 0.163 0.837 34 H 0.173 0.827 35 H 0.176 0.824 36 H 0.076 0.924 37 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 25.637 5.838 3.387 26.510 hybrid contribution 0.694 -0.754 0.613 1.194 sum 26.331 5.084 4.000 27.114 Atomic orbital electron populations 1.70917 1.05277 1.29463 1.51921 1.25742 0.96492 1.00969 0.99279 0.83652 0.73857 0.76003 0.75853 1.21498 1.22166 1.22278 1.20115 0.78117 0.95978 1.48496 0.89793 1.45700 1.02089 1.01275 1.85405 1.23506 0.88456 0.94258 0.98703 1.23354 0.90904 1.01420 0.81712 1.86708 1.65295 1.62540 1.17460 1.22049 0.89457 0.92914 0.97500 1.45852 1.12263 1.43398 1.35837 1.17928 0.81535 0.82186 0.83472 1.90822 1.73813 1.47948 1.27886 1.19959 0.94741 1.00168 0.98571 1.21337 1.00074 0.92829 0.92877 1.21115 0.91499 1.01174 1.02650 1.17670 0.89416 0.89740 0.91818 1.91578 1.73301 1.64789 1.80244 1.20884 0.89365 1.02140 0.98763 1.98411 1.17084 1.96049 1.89638 1.21079 0.91355 0.93799 0.98006 1.22335 0.85624 0.93681 0.97103 0.92848 0.92745 0.92696 0.79323 0.90031 0.89495 0.76738 0.83662 0.82739 0.82401 0.92386 0.92557 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -29.31 13.70 55.49 0.76 -28.55 16 2 C -0.03 -0.77 5.50 -17.43 -0.10 -0.87 16 3 Si 1.07 26.12 25.13 -169.99 -4.27 21.85 16 4 H -0.29 -6.44 6.13 56.52 0.35 -6.09 16 5 H -0.29 -7.32 7.11 56.52 0.40 -6.92 16 6 H -0.29 -6.67 6.65 56.52 0.38 -6.30 16 7 C -0.30 -8.63 11.08 -15.06 -0.17 -8.80 16 8 H 0.08 2.54 8.05 -52.49 -0.42 2.12 16 9 N -0.62 -14.82 3.70 -184.58 -0.68 -15.50 16 10 C 0.08 1.50 5.15 -8.37 -0.04 1.46 16 11 C 0.07 1.08 1.74 -89.97 -0.16 0.92 16 12 O -0.52 -7.95 13.56 -35.23 -0.48 -8.43 16 13 C 0.11 1.29 5.42 -4.04 -0.02 1.26 16 14 N -0.72 -7.11 5.29 -61.28 -0.32 -7.44 16 15 C 0.56 6.15 7.77 -12.39 -0.10 6.05 16 16 O -0.53 -7.59 16.34 5.30 0.09 -7.50 16 17 C -0.13 -1.12 5.87 -104.97 -0.62 -1.73 16 18 C -0.05 -0.32 9.54 -39.20 -0.37 -0.69 16 19 C -0.15 -0.88 10.01 -39.58 -0.40 -1.27 16 20 C 0.13 1.05 7.28 -39.25 -0.29 0.77 16 21 F -0.12 -1.04 16.83 2.25 0.04 -1.00 16 22 C -0.08 -0.71 6.32 -39.50 -0.25 -0.96 16 23 Cl -0.04 -0.34 28.60 -51.86 -1.48 -1.83 16 24 C -0.02 -0.20 9.37 -39.16 -0.37 -0.57 16 25 C 0.14 2.62 8.10 -8.50 -0.07 2.55 16 26 H 0.26 8.11 8.73 -40.82 -0.36 7.76 16 27 H 0.06 1.03 7.51 -51.93 -0.39 0.64 16 28 H 0.06 1.10 4.65 -51.93 -0.24 0.86 16 29 H 0.36 3.63 7.21 45.56 0.33 3.95 16 30 H 0.08 0.98 8.14 -51.93 -0.42 0.56 16 31 H 0.09 1.10 7.89 -51.93 -0.41 0.69 16 32 H 0.40 2.88 4.98 -40.82 -0.20 2.68 16 33 H 0.15 0.52 6.40 -52.48 -0.34 0.18 16 34 H 0.15 0.58 8.06 -52.49 -0.42 0.15 16 35 H 0.16 1.38 7.65 -52.49 -0.40 0.98 16 36 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 37 H 0.06 0.95 8.10 -51.93 -0.42 0.53 16 LS Contribution 331.69 15.07 5.00 5.00 Total: -1.00 -35.51 331.69 -7.29 -42.80 By element: Atomic # 1 Polarization: 5.48 SS G_CDS: -3.00 Total: 2.48 kcal Atomic # 6 Polarization: 1.07 SS G_CDS: -2.94 Total: -1.87 kcal Atomic # 7 Polarization: -51.24 SS G_CDS: -0.25 Total: -51.49 kcal Atomic # 8 Polarization: -15.54 SS G_CDS: -0.39 Total: -15.93 kcal Atomic # 9 Polarization: -1.04 SS G_CDS: 0.04 Total: -1.00 kcal Atomic # 14 Polarization: 26.12 SS G_CDS: -4.27 Total: 21.85 kcal Atomic # 17 Polarization: -0.34 SS G_CDS: -1.48 Total: -1.83 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -35.51 -7.29 -42.80 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754772397.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.831 kcal (2) G-P(sol) polarization free energy of solvation -35.508 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.678 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.291 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.800 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.969 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds