Wall clock time and date at job start Tue Mar 31 2020 15:24:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86796 * 120.00217 * 2 1 4 4 H 1.48499 * 109.47369 * 264.71381 * 3 2 1 5 5 H 1.48500 * 109.47154 * 24.71139 * 3 2 1 6 6 H 1.48501 * 109.47145 * 144.71758 * 3 2 1 7 7 C 1.38813 * 119.99721 * 179.72660 * 2 1 3 8 8 H 1.08002 * 119.99897 * 186.70668 * 7 2 1 9 9 N 1.36935 * 120.00278 * 6.70578 * 7 2 1 10 10 C 1.47068 * 136.05369 * 6.13250 * 9 7 2 11 11 C 1.53756 * 87.88782 * 152.96113 * 10 9 7 12 12 O 1.42901 * 114.57162 * 272.66138 * 11 10 9 13 13 C 1.52995 * 114.08863 * 139.77904 * 11 10 9 14 14 N 1.46497 * 109.47453 * 86.55742 * 13 11 10 15 15 C 1.34781 * 120.00378 * 180.02562 * 14 13 11 16 16 O 1.21557 * 119.99918 * 359.97438 * 15 14 13 17 17 C 1.47791 * 120.00274 * 180.02562 * 15 14 13 18 18 C 1.39626 * 120.11991 * 359.72288 * 17 15 14 19 19 C 1.37896 * 119.91573 * 179.72149 * 18 17 15 20 20 C 1.38476 * 120.15938 * 0.55759 * 19 18 17 21 21 Cl 1.73602 * 119.87807 * 179.69843 * 20 19 18 22 22 C 1.38703 * 120.24164 * 359.71996 * 20 19 18 23 23 F 1.35102 * 119.95556 * 179.97438 * 22 20 19 24 24 C 1.38133 * 120.08209 * 359.97438 * 22 20 19 25 25 C 1.47063 * 136.06032 * 186.49512 * 9 7 2 26 26 H 0.97002 * 119.99507 * 0.02562 * 1 2 3 27 27 H 1.09006 * 113.46436 * 267.68951 * 10 9 7 28 28 H 1.08994 * 113.47260 * 38.13232 * 10 9 7 29 29 H 0.96705 * 113.99953 * 273.67112 * 12 11 10 30 30 H 1.09005 * 109.47485 * 206.56308 * 13 11 10 31 31 H 1.09005 * 109.47416 * 326.55751 * 13 11 10 32 32 H 0.96998 * 120.00025 * 0.02562 * 14 13 11 33 33 H 1.08007 * 120.04110 * 0.02562 * 18 17 15 34 34 H 1.08000 * 119.91587 * 180.25320 * 19 18 17 35 35 H 1.07993 * 120.07598 * 180.02562 * 24 22 20 36 36 H 1.08999 * 113.46825 * 321.87151 * 25 9 7 37 37 H 1.09007 * 113.46628 * 92.25327 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.6095 1.9819 -1.3941 5 1 1.3963 2.6823 0.5853 6 1 3.4875 1.4749 0.8087 7 6 2.0102 -1.2022 0.0057 8 1 3.0847 -1.2049 0.1150 9 7 1.3326 -2.3847 -0.1271 10 6 -0.0563 -2.7843 -0.3998 11 6 0.4968 -4.0862 -1.0027 12 8 0.8323 -4.0033 -2.3893 13 6 -0.3177 -5.3326 -0.6510 14 7 -1.4065 -5.4934 -1.6179 15 6 -2.2601 -6.5303 -1.5055 16 8 -2.1263 -7.3325 -0.6020 17 6 -3.3581 -6.6928 -2.4813 18 6 -3.5171 -5.7703 -3.5172 19 6 -4.5396 -5.9292 -4.4287 20 6 -5.4160 -6.9950 -4.3123 21 17 -6.7054 -7.1835 -5.4593 22 6 -5.2678 -7.9121 -3.2823 23 9 -6.1265 -8.9494 -3.1739 24 6 -4.2432 -7.7661 -2.3674 25 6 1.6719 -3.8137 -0.0535 26 1 -0.4849 0.8401 -0.0004 27 1 -0.6480 -2.9409 0.5022 28 1 -0.5569 -2.1457 -1.1274 29 1 0.0899 -4.1755 -2.9846 30 1 0.3285 -6.2098 -0.6823 31 1 -0.7343 -5.2239 0.3504 32 1 -1.5131 -4.8535 -2.3391 33 1 -2.8370 -4.9361 -3.6075 34 1 -4.6600 -5.2179 -5.2324 35 1 -4.1276 -8.4804 -1.5658 36 1 2.6436 -4.0519 -0.4861 37 1 1.5367 -4.2414 0.9400 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754775181.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:24:00 Heat of formation + Delta-G solvation = -38.776115 kcal Electronic energy + Delta-G solvation = -24679.104002 eV Core-core repulsion = 20592.436001 eV Total energy + Delta-G solvation = -4086.668001 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 328.078 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -49.38721 -40.61055 -39.26948 -38.41206 -36.96498 -35.20569 -34.22067 -32.14913 -31.65480 -31.17900 -28.65318 -26.32653 -24.89681 -24.23036 -23.38713 -22.05681 -20.89467 -19.56548 -19.02704 -17.28561 -17.26191 -16.90955 -16.63744 -16.24277 -15.88745 -15.66959 -15.37676 -14.87501 -14.53081 -14.17228 -14.04377 -13.87716 -13.63334 -13.53435 -13.22784 -12.88449 -12.83160 -12.31790 -12.25195 -12.05975 -11.82829 -11.42448 -11.21651 -10.90380 -10.80586 -10.55707 -10.29993 -9.92172 -9.59446 -9.57507 -9.38245 -9.21901 -8.99805 -8.86720 -6.97249 -5.85082 -3.15517 0.04326 0.54279 1.46136 2.31541 2.79656 3.23360 3.36686 3.41225 3.42776 3.56003 4.08244 4.21861 4.37873 4.39239 4.40766 4.57745 4.84579 4.96672 5.09413 5.22617 5.25994 5.34936 5.43763 5.52141 5.59305 5.64487 5.89954 6.04522 6.14417 6.30814 6.42440 6.46129 6.92527 6.99840 7.20495 7.40342 7.87610 7.90453 8.01854 8.96463 9.63103 10.53891 11.33792 Molecular weight = 328.08amu Principal moments of inertia in cm(-1) A = 0.020602 B = 0.002425 C = 0.002254 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1358.754011 B =11543.579874 C =12420.443490 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C -0.007 4.007 3 Si 0.915 3.085 4 H -0.287 1.287 5 H -0.290 1.290 6 H -0.281 1.281 7 C -0.215 4.215 8 H 0.083 0.917 9 N -0.599 5.599 10 C 0.144 3.856 11 C 0.054 3.946 12 O -0.520 6.520 13 C 0.107 3.893 14 N -0.715 5.715 15 C 0.559 3.441 16 O -0.529 6.529 17 C -0.096 4.096 18 C -0.083 4.083 19 C -0.086 4.086 20 C -0.055 4.055 21 Cl -0.043 7.043 22 C 0.104 3.896 23 F -0.122 7.122 24 C -0.084 4.084 25 C 0.134 3.866 26 H 0.254 0.746 27 H 0.039 0.961 28 H 0.065 0.935 29 H 0.358 0.642 30 H 0.076 0.924 31 H 0.085 0.915 32 H 0.398 0.602 33 H 0.147 0.853 34 H 0.153 0.847 35 H 0.160 0.840 36 H 0.052 0.948 37 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.642 -15.009 -10.248 21.583 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.568 5.568 2 C -0.204 4.204 3 Si 0.745 3.255 4 H -0.214 1.214 5 H -0.216 1.216 6 H -0.206 1.206 7 C -0.343 4.343 8 H 0.100 0.900 9 N -0.324 5.324 10 C 0.017 3.983 11 C 0.011 3.989 12 O -0.323 6.323 13 C -0.017 4.017 14 N -0.368 5.368 15 C 0.345 3.655 16 O -0.406 6.406 17 C -0.100 4.100 18 C -0.102 4.102 19 C -0.105 4.105 20 C -0.083 4.083 21 Cl -0.014 7.014 22 C 0.083 3.917 23 F -0.101 7.101 24 C -0.104 4.104 25 C 0.007 3.993 26 H 0.064 0.936 27 H 0.056 0.944 28 H 0.083 0.917 29 H 0.204 0.796 30 H 0.094 0.906 31 H 0.103 0.897 32 H 0.234 0.766 33 H 0.164 0.836 34 H 0.170 0.830 35 H 0.177 0.823 36 H 0.071 0.929 37 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -11.005 -15.090 -9.388 20.904 hybrid contribution -0.581 0.949 -0.556 1.244 sum -11.586 -14.141 -9.944 20.811 Atomic orbital electron populations 1.69831 1.05062 1.25532 1.56363 1.24812 0.95719 0.97672 1.02182 0.86095 0.78560 0.83053 0.77775 1.21398 1.21642 1.20628 1.18903 0.90488 0.81257 1.43611 0.89950 1.45359 1.05257 0.99178 1.82584 1.22695 0.89212 0.89466 0.96921 1.23528 0.98707 0.93438 0.83192 1.86672 1.37367 1.93784 1.14499 1.22036 0.87613 0.99085 0.93010 1.45843 1.30728 1.27937 1.32275 1.17966 0.81532 0.81476 0.84535 1.90811 1.72975 1.42897 1.33911 1.19916 0.96991 0.96199 0.96866 1.21421 0.97524 0.98414 0.92885 1.20962 0.93243 0.96226 1.00058 1.21274 0.94940 0.98135 0.93936 1.98411 1.47815 1.97167 1.58038 1.17219 0.91279 0.86921 0.96236 1.91573 1.67872 1.55075 1.95557 1.21219 0.92109 0.98573 0.98511 1.22381 0.95375 0.87191 0.94375 0.93601 0.94358 0.91654 0.79590 0.90565 0.89701 0.76598 0.83588 0.82964 0.82283 0.92941 0.93248 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.74 11.81 55.49 0.66 -26.09 16 2 C -0.01 -0.20 5.50 -17.43 -0.10 -0.30 16 3 Si 0.92 21.87 29.56 -169.99 -5.02 16.85 16 4 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 5 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 6 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 7 C -0.22 -5.99 10.73 -15.06 -0.16 -6.15 16 8 H 0.08 2.22 7.84 -52.49 -0.41 1.80 16 9 N -0.60 -15.04 3.76 -184.58 -0.69 -15.73 16 10 C 0.14 3.13 6.67 -8.37 -0.06 3.07 16 11 C 0.05 0.92 1.74 -89.97 -0.16 0.76 16 12 O -0.52 -8.63 13.56 -35.23 -0.48 -9.11 16 13 C 0.11 1.46 5.42 -4.05 -0.02 1.44 16 14 N -0.71 -7.99 5.29 -61.27 -0.32 -8.31 16 15 C 0.56 6.76 7.77 -12.35 -0.10 6.67 16 16 O -0.53 -8.22 16.35 5.32 0.09 -8.13 16 17 C -0.10 -0.92 5.87 -104.97 -0.62 -1.54 16 18 C -0.08 -0.59 9.54 -39.19 -0.37 -0.97 16 19 C -0.09 -0.59 9.81 -39.62 -0.39 -0.97 16 20 C -0.05 -0.46 6.33 -39.32 -0.25 -0.71 16 21 Cl -0.04 -0.36 28.60 -51.86 -1.48 -1.84 16 22 C 0.10 0.98 7.27 -39.45 -0.29 0.69 16 23 F -0.12 -1.25 16.83 2.25 0.04 -1.21 16 24 C -0.08 -0.81 9.57 -39.12 -0.37 -1.19 16 25 C 0.13 2.65 8.10 -8.51 -0.07 2.58 16 26 H 0.25 7.16 8.31 -40.82 -0.34 6.82 16 27 H 0.04 0.86 7.93 -51.93 -0.41 0.44 16 28 H 0.07 1.56 7.58 -51.93 -0.39 1.17 16 29 H 0.36 4.10 7.21 45.56 0.33 4.43 16 30 H 0.08 1.03 8.14 -51.93 -0.42 0.60 16 31 H 0.08 1.23 7.89 -51.93 -0.41 0.82 16 32 H 0.40 3.46 4.98 -40.82 -0.20 3.25 16 33 H 0.15 0.69 6.40 -52.48 -0.34 0.36 16 34 H 0.15 0.69 8.06 -52.49 -0.42 0.27 16 35 H 0.16 1.53 7.65 -52.49 -0.40 1.13 16 36 H 0.05 1.03 8.14 -51.93 -0.42 0.60 16 37 H 0.05 0.90 8.11 -51.93 -0.42 0.48 16 LS Contribution 339.62 15.07 5.12 5.12 Total: -1.00 -33.91 339.62 -8.11 -42.02 By element: Atomic # 1 Polarization: 6.11 SS G_CDS: -3.06 Total: 3.05 kcal Atomic # 6 Polarization: 6.32 SS G_CDS: -2.95 Total: 3.38 kcal Atomic # 7 Polarization: -49.76 SS G_CDS: -0.36 Total: -50.13 kcal Atomic # 8 Polarization: -16.85 SS G_CDS: -0.39 Total: -17.24 kcal Atomic # 9 Polarization: -1.25 SS G_CDS: 0.04 Total: -1.21 kcal Atomic # 14 Polarization: 21.87 SS G_CDS: -5.02 Total: 16.85 kcal Atomic # 17 Polarization: -0.36 SS G_CDS: -1.48 Total: -1.84 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -33.91 -8.11 -42.02 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754775181.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.245 kcal (2) G-P(sol) polarization free energy of solvation -33.907 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.662 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.114 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.021 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.776 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds