Wall clock time and date at job start Tue Mar 31 2020 15:23:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86796 * 120.00217 * 2 1 4 4 H 1.48499 * 109.47369 * 264.71381 * 3 2 1 5 5 H 1.48500 * 109.47154 * 24.71139 * 3 2 1 6 6 H 1.48501 * 109.47145 * 144.71758 * 3 2 1 7 7 C 1.38813 * 119.99721 * 179.72660 * 2 1 3 8 8 H 1.08002 * 119.99897 * 186.70668 * 7 2 1 9 9 N 1.36935 * 120.00278 * 6.70578 * 7 2 1 10 10 C 1.47068 * 136.05369 * 6.13250 * 9 7 2 11 11 C 1.53756 * 87.88782 * 152.96113 * 10 9 7 12 12 O 1.42901 * 114.57162 * 272.66138 * 11 10 9 13 13 C 1.52995 * 114.08863 * 139.77904 * 11 10 9 14 14 N 1.46497 * 109.47453 * 86.55742 * 13 11 10 15 15 C 1.34781 * 120.00378 * 180.02562 * 14 13 11 16 16 O 1.21557 * 119.99918 * 359.97438 * 15 14 13 17 17 C 1.47791 * 120.00274 * 180.02562 * 15 14 13 18 18 C 1.39626 * 120.11991 * 359.72288 * 17 15 14 19 19 C 1.37896 * 119.91573 * 179.72149 * 18 17 15 20 20 C 1.38476 * 120.15938 * 0.55759 * 19 18 17 21 21 Cl 1.73602 * 119.87807 * 179.69843 * 20 19 18 22 22 C 1.38703 * 120.24164 * 359.71996 * 20 19 18 23 23 F 1.35102 * 119.95556 * 179.97438 * 22 20 19 24 24 C 1.38133 * 120.08209 * 359.97438 * 22 20 19 25 25 C 1.47063 * 136.06032 * 186.49512 * 9 7 2 26 26 H 0.97002 * 119.99507 * 0.02562 * 1 2 3 27 27 H 1.09006 * 113.46436 * 267.68951 * 10 9 7 28 28 H 1.08994 * 113.47260 * 38.13232 * 10 9 7 29 29 H 0.96705 * 113.99953 * 273.67112 * 12 11 10 30 30 H 1.09005 * 109.47485 * 206.56308 * 13 11 10 31 31 H 1.09005 * 109.47416 * 326.55751 * 13 11 10 32 32 H 0.96998 * 120.00025 * 0.02562 * 14 13 11 33 33 H 1.08007 * 120.04110 * 0.02562 * 18 17 15 34 34 H 1.08000 * 119.91587 * 180.25320 * 19 18 17 35 35 H 1.07993 * 120.07598 * 180.02562 * 24 22 20 36 36 H 1.08999 * 113.46825 * 321.87151 * 25 9 7 37 37 H 1.09007 * 113.46628 * 92.25327 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.6095 1.9819 -1.3941 5 1 1.3963 2.6823 0.5853 6 1 3.4875 1.4749 0.8087 7 6 2.0102 -1.2022 0.0057 8 1 3.0847 -1.2049 0.1150 9 7 1.3326 -2.3847 -0.1271 10 6 -0.0563 -2.7843 -0.3998 11 6 0.4968 -4.0862 -1.0027 12 8 0.8323 -4.0033 -2.3893 13 6 -0.3177 -5.3326 -0.6510 14 7 -1.4065 -5.4934 -1.6179 15 6 -2.2601 -6.5303 -1.5055 16 8 -2.1263 -7.3325 -0.6020 17 6 -3.3581 -6.6928 -2.4813 18 6 -3.5171 -5.7703 -3.5172 19 6 -4.5396 -5.9292 -4.4287 20 6 -5.4160 -6.9950 -4.3123 21 17 -6.7054 -7.1835 -5.4593 22 6 -5.2678 -7.9121 -3.2823 23 9 -6.1265 -8.9494 -3.1739 24 6 -4.2432 -7.7661 -2.3674 25 6 1.6719 -3.8137 -0.0535 26 1 -0.4849 0.8401 -0.0004 27 1 -0.6480 -2.9409 0.5022 28 1 -0.5569 -2.1457 -1.1274 29 1 0.0899 -4.1755 -2.9846 30 1 0.3285 -6.2098 -0.6823 31 1 -0.7343 -5.2239 0.3504 32 1 -1.5131 -4.8535 -2.3391 33 1 -2.8370 -4.9361 -3.6075 34 1 -4.6600 -5.2179 -5.2324 35 1 -4.1276 -8.4804 -1.5658 36 1 2.6436 -4.0519 -0.4861 37 1 1.5367 -4.2414 0.9400 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001754775181.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:23:59 Heat of formation + Delta-G solvation = -63.449774 kcal Electronic energy + Delta-G solvation = -24680.173932 eV Core-core repulsion = 20592.436001 eV Total energy + Delta-G solvation = -4087.737931 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 328.078 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -50.12607 -41.57343 -40.55856 -39.35668 -37.63180 -36.64647 -35.39235 -34.08571 -32.40541 -31.92117 -30.17114 -27.86929 -26.54448 -25.22901 -24.07286 -23.62429 -21.83311 -21.06445 -19.93846 -18.79503 -18.05256 -17.99166 -17.57811 -17.15669 -16.98018 -16.86518 -16.45982 -16.39173 -15.77417 -15.50629 -15.12429 -15.02255 -14.74604 -14.59970 -14.38519 -14.09963 -13.88855 -13.54876 -13.47442 -13.04871 -12.93322 -12.78551 -12.60614 -12.51331 -12.24146 -12.06569 -11.79855 -11.43887 -11.16762 -10.91607 -10.68729 -10.31983 -10.18116 -9.89396 -8.94210 -7.93700 -5.24427 -0.66562 -0.09830 0.81316 1.46678 1.48910 1.50847 1.56480 1.84709 2.46246 2.46981 2.87838 3.04701 3.30067 3.31365 3.42580 3.47363 3.59458 3.79778 3.90808 3.91399 4.32605 4.38907 4.54380 4.71796 4.76561 4.78140 4.79570 4.83901 4.94574 4.95236 5.15859 5.17396 5.29347 5.41503 5.46977 5.89932 6.30546 6.82934 6.90258 7.01859 7.57955 8.57244 9.24884 Molecular weight = 328.08amu Principal moments of inertia in cm(-1) A = 0.020602 B = 0.002425 C = 0.002254 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1358.754011 B =11543.579874 C =12420.443490 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.951 5.951 2 C -0.064 4.064 3 Si 0.979 3.021 4 H -0.284 1.284 5 H -0.294 1.294 6 H -0.270 1.270 7 C -0.229 4.229 8 H 0.082 0.918 9 N -0.635 5.635 10 C 0.141 3.859 11 C 0.095 3.905 12 O -0.534 6.534 13 C 0.121 3.879 14 N -0.705 5.705 15 C 0.563 3.437 16 O -0.567 6.567 17 C -0.107 4.107 18 C -0.069 4.069 19 C -0.078 4.078 20 C -0.056 4.056 21 Cl -0.042 7.042 22 C 0.090 3.910 23 F -0.131 7.131 24 C -0.090 4.090 25 C 0.125 3.875 26 H 0.249 0.751 27 H 0.029 0.971 28 H 0.038 0.962 29 H 0.383 0.617 30 H 0.088 0.912 31 H 0.079 0.921 32 H 0.411 0.589 33 H 0.175 0.825 34 H 0.182 0.818 35 H 0.151 0.849 36 H 0.055 0.945 37 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.446 -14.997 -11.695 22.196 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.599 5.599 2 C -0.258 4.258 3 Si 0.807 3.193 4 H -0.211 1.211 5 H -0.220 1.220 6 H -0.195 1.195 7 C -0.357 4.357 8 H 0.100 0.900 9 N -0.361 5.361 10 C 0.015 3.985 11 C 0.052 3.948 12 O -0.340 6.340 13 C -0.004 4.004 14 N -0.359 5.359 15 C 0.350 3.650 16 O -0.447 6.447 17 C -0.110 4.110 18 C -0.088 4.088 19 C -0.096 4.096 20 C -0.084 4.084 21 Cl -0.013 7.013 22 C 0.070 3.930 23 F -0.110 7.110 24 C -0.110 4.110 25 C 0.000 4.000 26 H 0.058 0.942 27 H 0.047 0.953 28 H 0.057 0.943 29 H 0.232 0.768 30 H 0.106 0.894 31 H 0.097 0.903 32 H 0.250 0.750 33 H 0.192 0.808 34 H 0.199 0.801 35 H 0.169 0.831 36 H 0.073 0.927 37 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -10.812 -15.104 -10.872 21.523 hybrid contribution -0.655 0.894 -0.153 1.119 sum -11.467 -14.210 -11.025 21.330 Atomic orbital electron populations 1.69991 1.06319 1.25762 1.57850 1.25614 0.96623 1.00796 1.02722 0.85089 0.77543 0.78904 0.77739 1.21082 1.21998 1.19541 1.19264 0.90979 0.82862 1.42598 0.89977 1.45728 1.06893 1.00470 1.82965 1.22711 0.87903 0.91572 0.96302 1.22855 0.96512 0.92323 0.83075 1.86623 1.39162 1.93814 1.14438 1.21720 0.88003 0.97454 0.93214 1.45665 1.29973 1.28163 1.32114 1.18252 0.81657 0.80741 0.84308 1.90797 1.73998 1.44299 1.35640 1.19722 0.96573 0.97283 0.97461 1.21709 0.97569 0.98073 0.91440 1.21294 0.92120 0.95823 1.00349 1.21460 0.95178 0.98243 0.93522 1.98415 1.47845 1.97191 1.57813 1.17294 0.91456 0.87308 0.96921 1.91547 1.68156 1.55592 1.95688 1.21173 0.92494 0.98766 0.98569 1.22621 0.96713 0.84554 0.96141 0.94185 0.95318 0.94310 0.76783 0.89423 0.90305 0.74995 0.80808 0.80081 0.83086 0.92676 0.91359 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -55.98 11.81 21.65 0.26 -55.73 16 2 C -0.06 -3.61 5.50 84.86 0.47 -3.15 16 3 Si 0.98 45.13 29.56 68.60 2.03 47.15 16 4 H -0.28 -12.83 7.11 99.48 0.71 -12.13 16 5 H -0.29 -13.56 7.11 99.48 0.71 -12.85 16 6 H -0.27 -11.86 7.11 99.48 0.71 -11.15 16 7 C -0.23 -12.79 10.73 84.03 0.90 -11.89 16 8 H 0.08 4.42 7.84 -2.91 -0.02 4.40 16 9 N -0.64 -31.88 3.76 -738.37 -2.78 -34.65 16 10 C 0.14 6.15 6.67 83.27 0.55 6.70 16 11 C 0.10 3.08 1.74 -10.37 -0.02 3.06 16 12 O -0.53 -16.43 13.56 -148.98 -2.02 -18.45 16 13 C 0.12 3.07 5.42 86.38 0.47 3.54 16 14 N -0.71 -14.15 5.29 -466.02 -2.47 -16.61 16 15 C 0.56 12.77 7.77 86.77 0.67 13.45 16 16 O -0.57 -17.31 16.35 -3.90 -0.06 -17.37 16 17 C -0.11 -1.87 5.87 -20.09 -0.12 -1.98 16 18 C -0.07 -0.77 9.54 22.52 0.21 -0.55 16 19 C -0.08 -0.81 9.81 22.25 0.22 -0.59 16 20 C -0.06 -0.84 6.33 22.44 0.14 -0.70 16 21 Cl -0.04 -0.62 28.60 -2.72 -0.08 -0.70 16 22 C 0.09 1.63 7.27 22.36 0.16 1.79 16 23 F -0.13 -2.66 16.83 44.97 0.76 -1.90 16 24 C -0.09 -1.69 9.57 22.57 0.22 -1.48 16 25 C 0.13 4.83 8.10 83.18 0.67 5.50 16 26 H 0.25 14.26 8.31 -92.71 -0.77 13.49 16 27 H 0.03 1.30 7.93 -2.38 -0.02 1.28 16 28 H 0.04 1.87 7.58 -2.39 -0.02 1.85 16 29 H 0.38 7.50 7.21 -74.05 -0.53 6.97 16 30 H 0.09 2.13 8.14 -2.38 -0.02 2.11 16 31 H 0.08 2.17 7.89 -2.38 -0.02 2.15 16 32 H 0.41 5.87 4.98 -92.71 -0.46 5.41 16 33 H 0.17 0.90 6.40 -2.91 -0.02 0.88 16 34 H 0.18 0.87 8.06 -2.91 -0.02 0.84 16 35 H 0.15 3.00 7.65 -2.91 -0.02 2.98 16 36 H 0.05 2.08 8.14 -2.39 -0.02 2.06 16 37 H 0.07 2.39 8.11 -2.38 -0.02 2.37 16 Total: -1.00 -74.22 339.62 0.34 -73.87 By element: Atomic # 1 Polarization: 10.52 SS G_CDS: 0.15 Total: 10.67 kcal Atomic # 6 Polarization: 9.15 SS G_CDS: 4.56 Total: 13.71 kcal Atomic # 7 Polarization: -102.01 SS G_CDS: -4.99 Total: -106.99 kcal Atomic # 8 Polarization: -33.73 SS G_CDS: -2.08 Total: -35.82 kcal Atomic # 9 Polarization: -2.66 SS G_CDS: 0.76 Total: -1.90 kcal Atomic # 14 Polarization: 45.13 SS G_CDS: 2.03 Total: 47.15 kcal Atomic # 17 Polarization: -0.62 SS G_CDS: -0.08 Total: -0.70 kcal Total: -74.22 0.34 -73.87 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754775181.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.422 kcal (2) G-P(sol) polarization free energy of solvation -74.216 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.794 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.344 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.872 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.450 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds