Wall clock time and date at job start Tue Mar 31 2020 15:43:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86800 * 119.99867 * 2 1 4 4 H 1.48497 * 109.47297 * 239.99785 * 3 2 1 5 5 H 1.48507 * 109.46946 * 0.02562 * 3 2 1 6 6 H 1.48504 * 109.47104 * 119.99101 * 3 2 1 7 7 C 1.38810 * 119.99869 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99523 * 180.02562 * 7 2 1 9 9 N 1.36932 * 120.00188 * 0.02562 * 7 2 1 10 10 C 1.46504 * 119.99955 * 180.02562 * 9 7 2 11 11 C 1.52993 * 109.47185 * 179.97438 * 10 9 7 12 12 H 1.08999 * 110.01769 * 306.38718 * 11 10 9 13 13 C 1.53876 * 110.03447 * 67.83291 * 11 10 9 14 14 C 1.54461 * 106.69029 * 119.44335 * 13 11 10 15 15 C 1.54894 * 104.09901 * 23.33952 * 14 13 11 16 16 H 1.09001 * 110.74841 * 80.71088 * 15 14 13 17 17 N 1.46500 * 110.75648 * 203.89233 * 15 14 13 18 18 C 1.34773 * 120.00431 * 271.06997 * 17 15 14 19 19 O 1.21643 * 119.99862 * 359.97438 * 18 17 15 20 20 C 1.47185 * 120.00084 * 179.72617 * 18 17 15 21 21 C 1.35968 * 123.45618 * 359.97437 * 20 18 17 22 22 S 1.70441 * 110.84661 * 179.91585 * 21 20 18 23 23 C 1.75510 * 92.45287 * 0.30319 * 22 21 20 24 24 Cl 1.73605 * 124.71649 * 179.83354 * 23 22 21 25 25 C 1.32892 * 110.56235 * 359.82576 * 23 22 21 26 26 C 1.54264 * 110.03166 * 184.99496 * 11 10 9 27 27 H 0.96996 * 120.00230 * 0.02562 * 1 2 3 28 28 H 0.96993 * 120.00542 * 359.97438 * 9 7 2 29 29 H 1.09002 * 109.47436 * 59.99274 * 10 9 7 30 30 H 1.09010 * 109.46888 * 299.99723 * 10 9 7 31 31 H 1.09003 * 110.03146 * 238.57499 * 13 11 10 32 32 H 1.09001 * 110.03010 * 359.94366 * 13 11 10 33 33 H 1.08999 * 110.40298 * 264.75901 * 14 13 11 34 34 H 1.08995 * 110.66388 * 142.05456 * 14 13 11 35 35 H 0.97000 * 119.99456 * 91.06560 * 17 15 14 36 36 H 1.08001 * 124.57882 * 0.02562 * 21 20 18 37 37 H 1.07999 * 123.47264 * 179.97438 * 25 23 22 38 38 H 1.08999 * 110.48494 * 98.42675 * 26 11 10 39 39 H 1.08995 * 110.49022 * 335.78266 * 26 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1040 1.6965 -1.2124 5 1 1.2851 2.7465 0.0006 6 1 3.1038 1.6965 1.2126 7 6 2.0102 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0010 9 7 1.3256 -2.3880 0.0005 10 6 2.0581 -3.6568 0.0017 11 6 1.0640 -4.8197 0.0021 12 1 0.3594 -4.7079 0.8262 13 6 0.3074 -4.8668 -1.3370 14 6 0.6237 -6.2364 -1.9773 15 6 1.0223 -7.1309 -0.7772 16 1 0.1367 -7.5026 -0.2618 17 7 1.8694 -8.2424 -1.2169 18 6 1.3081 -9.4019 -1.6129 19 8 0.0980 -9.5258 -1.6047 20 6 2.1590 -10.5164 -2.0603 21 6 3.5165 -10.4528 -2.1029 22 16 4.1751 -11.9201 -2.6672 23 6 2.5884 -12.6442 -2.8629 24 17 2.3015 -14.2551 -3.4431 25 6 1.6371 -11.7879 -2.5051 26 6 1.8180 -6.1594 0.1294 27 1 -0.4850 0.8400 -0.0004 28 1 0.3557 -2.3881 0.0005 29 1 2.6842 -3.7141 0.8921 30 1 2.6855 -3.7149 -0.8879 31 1 -0.7651 -4.7782 -1.1632 32 1 0.6478 -4.0605 -1.9868 33 1 1.4539 -6.1457 -2.6777 34 1 -0.2566 -6.6395 -2.4779 35 1 2.8344 -8.1436 -1.2231 36 1 4.0990 -9.5897 -1.8162 37 1 0.5828 -12.0187 -2.5435 38 1 1.8071 -6.5066 1.1626 39 1 2.8423 -6.0563 -0.2285 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001755742547.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:43:32 Heat of formation + Delta-G solvation = -12.333563 kcal Electronic energy + Delta-G solvation = -22132.640320 eV Core-core repulsion = 18613.332130 eV Total energy + Delta-G solvation = -3519.308190 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 328.075 amu Computer time = 1.75 seconds Orbital eigenvalues (eV) -40.31673 -38.41847 -37.58547 -36.67377 -34.89387 -33.50513 -31.19379 -30.08834 -28.76980 -27.67600 -25.43881 -24.29297 -22.21508 -22.12149 -20.73447 -19.85916 -19.10323 -18.71906 -17.49494 -17.04415 -16.18063 -15.65820 -15.28889 -15.13336 -14.59061 -14.22942 -14.09839 -14.00081 -13.43953 -13.38283 -13.18078 -13.07219 -12.79218 -12.11106 -12.09755 -12.01096 -11.84073 -11.49185 -11.26836 -11.10452 -10.85416 -10.79552 -10.53794 -10.37951 -10.19035 -10.10070 -9.89234 -9.66123 -9.41318 -9.22117 -8.94857 -8.85510 -6.90418 -5.75214 -3.03757 0.12554 0.50845 1.20699 1.40136 1.65403 2.95719 3.04482 3.44138 3.48383 3.49657 4.26659 4.50809 4.58589 4.70744 4.74952 4.83514 5.01346 5.11732 5.27048 5.49684 5.55365 5.56618 5.58803 5.65333 5.68235 5.82921 5.90175 6.10466 6.14567 6.27694 6.32576 6.41802 6.55322 6.67619 6.82676 6.94015 7.28185 7.69759 7.98577 8.43888 9.54808 10.13821 10.48464 11.47568 Molecular weight = 328.08amu Principal moments of inertia in cm(-1) A = 0.036331 B = 0.001851 C = 0.001796 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 770.510068 B =15123.613737 C =15589.284726 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C -0.015 4.015 3 Si 0.907 3.093 4 H -0.286 1.286 5 H -0.291 1.291 6 H -0.286 1.286 7 C -0.240 4.240 8 H 0.069 0.931 9 N -0.732 5.732 10 C 0.161 3.839 11 C -0.095 4.095 12 H 0.075 0.925 13 C -0.115 4.115 14 C -0.132 4.132 15 C 0.139 3.861 16 H 0.097 0.903 17 N -0.714 5.714 18 C 0.577 3.423 19 O -0.532 6.532 20 C -0.142 4.142 21 C -0.209 4.209 22 S 0.240 5.760 23 C -0.174 4.174 24 Cl -0.010 7.010 25 C -0.068 4.068 26 C -0.120 4.120 27 H 0.255 0.745 28 H 0.384 0.616 29 H 0.016 0.984 30 H 0.018 0.982 31 H 0.062 0.938 32 H 0.079 0.921 33 H 0.065 0.935 34 H 0.066 0.934 35 H 0.398 0.602 36 H 0.179 0.821 37 H 0.164 0.836 38 H 0.070 0.930 39 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.571 -28.880 -5.613 30.643 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.210 4.210 3 Si 0.738 3.262 4 H -0.213 1.213 5 H -0.217 1.217 6 H -0.213 1.213 7 C -0.371 4.371 8 H 0.087 0.913 9 N -0.376 5.376 10 C 0.033 3.967 11 C -0.115 4.115 12 H 0.094 0.906 13 C -0.153 4.153 14 C -0.170 4.170 15 C 0.035 3.965 16 H 0.115 0.885 17 N -0.364 5.364 18 C 0.362 3.638 19 O -0.409 6.409 20 C -0.161 4.161 21 C -0.348 4.348 22 S 0.504 5.496 23 C -0.317 4.317 24 Cl 0.019 6.981 25 C -0.098 4.098 26 C -0.159 4.159 27 H 0.065 0.935 28 H 0.218 0.782 29 H 0.034 0.966 30 H 0.036 0.964 31 H 0.081 0.919 32 H 0.097 0.903 33 H 0.084 0.916 34 H 0.085 0.915 35 H 0.232 0.768 36 H 0.197 0.803 37 H 0.181 0.819 38 H 0.089 0.911 39 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 9.258 -29.497 -5.905 31.475 hybrid contribution -0.805 1.472 0.206 1.690 sum 8.453 -28.025 -5.699 29.822 Atomic orbital electron populations 1.69650 1.05081 1.25736 1.57712 1.24743 0.95528 0.97674 1.03104 0.86270 0.78509 0.83608 0.77795 1.21316 1.21693 1.21324 1.19180 0.90962 0.84263 1.42731 0.91335 1.42358 1.05914 0.99927 1.89415 1.20734 0.93028 0.85398 0.97520 1.21867 0.97815 0.93723 0.98062 0.90644 1.22163 1.00303 0.96296 0.96547 1.22770 1.01426 0.95565 0.97262 1.22140 0.93980 0.84936 0.95475 0.88479 1.45887 1.10401 1.13340 1.66776 1.17469 0.87328 0.81687 0.77362 1.90822 1.13985 1.82230 1.53880 1.20092 0.92311 0.95940 1.07714 1.25832 0.98484 1.04606 1.05828 1.83232 1.03858 1.02203 1.60273 1.25116 0.99146 0.93685 1.13787 1.98387 1.95649 1.17198 1.86875 1.21173 1.01127 0.90307 0.97232 1.22607 0.99334 0.94682 0.99245 0.93476 0.78195 0.96603 0.96386 0.91868 0.90274 0.91599 0.91503 0.76753 0.80331 0.81879 0.91127 0.90954 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 37. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.28 13.06 55.49 0.72 -27.55 16 2 C -0.01 -0.42 5.50 -17.43 -0.10 -0.51 16 3 Si 0.91 22.40 29.55 -169.99 -5.02 17.38 16 4 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 5 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 6 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 7 C -0.24 -6.71 9.99 -15.06 -0.15 -6.87 16 8 H 0.07 1.85 7.83 -52.49 -0.41 1.44 16 9 N -0.73 -18.37 5.39 -59.91 -0.32 -18.70 16 10 C 0.16 3.13 5.27 -4.04 -0.02 3.11 16 11 C -0.10 -1.47 2.96 -89.51 -0.27 -1.74 16 12 H 0.08 1.23 8.14 -51.93 -0.42 0.80 16 13 C -0.11 -1.76 6.19 -25.51 -0.16 -1.92 16 14 C -0.13 -1.71 6.53 -24.97 -0.16 -1.87 16 15 C 0.14 1.63 3.22 -65.93 -0.21 1.42 16 16 H 0.10 1.28 7.62 -51.93 -0.40 0.89 16 17 N -0.71 -7.01 5.16 -53.02 -0.27 -7.28 16 18 C 0.58 6.70 7.79 -12.63 -0.10 6.60 16 19 O -0.53 -8.22 16.48 5.24 0.09 -8.13 16 20 C -0.14 -1.30 5.98 -104.63 -0.63 -1.92 16 21 C -0.21 -1.30 10.38 29.92 0.31 -0.99 16 22 S 0.24 1.35 23.02 -107.50 -2.47 -1.13 16 23 C -0.17 -1.34 7.01 28.89 0.20 -1.14 16 24 Cl -0.01 -0.07 29.27 -51.86 -1.52 -1.59 16 25 C -0.07 -0.61 10.04 -38.98 -0.39 -1.00 16 26 C -0.12 -1.41 5.98 -25.07 -0.15 -1.56 16 27 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 28 H 0.38 10.16 7.55 -40.82 -0.31 9.86 16 29 H 0.02 0.32 8.14 -51.93 -0.42 -0.11 16 30 H 0.02 0.36 8.14 -51.92 -0.42 -0.07 16 31 H 0.06 0.98 8.14 -51.93 -0.42 0.55 16 32 H 0.08 1.40 7.61 -51.93 -0.40 1.00 16 33 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 34 H 0.07 0.91 8.14 -51.93 -0.42 0.48 16 35 H 0.40 2.74 7.04 -40.82 -0.29 2.46 16 36 H 0.18 0.63 7.01 -52.49 -0.37 0.26 16 37 H 0.16 1.51 8.06 -52.49 -0.42 1.08 16 38 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 39 H 0.07 0.77 7.73 -51.93 -0.40 0.37 16 LS Contribution 355.84 15.07 5.36 5.36 Total: -1.00 -32.68 355.84 -10.34 -43.02 By element: Atomic # 1 Polarization: 12.08 SS G_CDS: -5.08 Total: 6.99 kcal Atomic # 6 Polarization: -6.57 SS G_CDS: -1.82 Total: -8.39 kcal Atomic # 7 Polarization: -53.66 SS G_CDS: 0.13 Total: -53.53 kcal Atomic # 8 Polarization: -8.22 SS G_CDS: 0.09 Total: -8.13 kcal Atomic # 14 Polarization: 22.40 SS G_CDS: -5.02 Total: 17.38 kcal Atomic # 16 Polarization: 1.35 SS G_CDS: -2.47 Total: -1.13 kcal Atomic # 17 Polarization: -0.07 SS G_CDS: -1.52 Total: -1.59 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -32.68 -10.34 -43.02 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755742547.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.687 kcal (2) G-P(sol) polarization free energy of solvation -32.680 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.993 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.341 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.021 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.334 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.76 seconds