Wall clock time and date at job start Tue Mar 31 2020 15:43:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86800 * 119.99867 * 2 1 4 4 H 1.48497 * 109.47297 * 239.99785 * 3 2 1 5 5 H 1.48507 * 109.46946 * 0.02562 * 3 2 1 6 6 H 1.48504 * 109.47104 * 119.99101 * 3 2 1 7 7 C 1.38810 * 119.99869 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99523 * 180.02562 * 7 2 1 9 9 N 1.36932 * 120.00188 * 0.02562 * 7 2 1 10 10 C 1.46504 * 119.99955 * 180.02562 * 9 7 2 11 11 C 1.52993 * 109.47185 * 179.97438 * 10 9 7 12 12 H 1.08999 * 110.01769 * 306.38718 * 11 10 9 13 13 C 1.53876 * 110.03447 * 67.83291 * 11 10 9 14 14 C 1.54461 * 106.69029 * 119.44335 * 13 11 10 15 15 C 1.54894 * 104.09901 * 23.33952 * 14 13 11 16 16 H 1.09001 * 110.74841 * 80.71088 * 15 14 13 17 17 N 1.46500 * 110.75648 * 203.89233 * 15 14 13 18 18 C 1.34773 * 120.00431 * 271.06997 * 17 15 14 19 19 O 1.21643 * 119.99862 * 359.97438 * 18 17 15 20 20 C 1.47185 * 120.00084 * 179.72617 * 18 17 15 21 21 C 1.35968 * 123.45618 * 359.97437 * 20 18 17 22 22 S 1.70441 * 110.84661 * 179.91585 * 21 20 18 23 23 C 1.75510 * 92.45287 * 0.30319 * 22 21 20 24 24 Cl 1.73605 * 124.71649 * 179.83354 * 23 22 21 25 25 C 1.32892 * 110.56235 * 359.82576 * 23 22 21 26 26 C 1.54264 * 110.03166 * 184.99496 * 11 10 9 27 27 H 0.96996 * 120.00230 * 0.02562 * 1 2 3 28 28 H 0.96993 * 120.00542 * 359.97438 * 9 7 2 29 29 H 1.09002 * 109.47436 * 59.99274 * 10 9 7 30 30 H 1.09010 * 109.46888 * 299.99723 * 10 9 7 31 31 H 1.09003 * 110.03146 * 238.57499 * 13 11 10 32 32 H 1.09001 * 110.03010 * 359.94366 * 13 11 10 33 33 H 1.08999 * 110.40298 * 264.75901 * 14 13 11 34 34 H 1.08995 * 110.66388 * 142.05456 * 14 13 11 35 35 H 0.97000 * 119.99456 * 91.06560 * 17 15 14 36 36 H 1.08001 * 124.57882 * 0.02562 * 21 20 18 37 37 H 1.07999 * 123.47264 * 179.97438 * 25 23 22 38 38 H 1.08999 * 110.48494 * 98.42675 * 26 11 10 39 39 H 1.08995 * 110.49022 * 335.78266 * 26 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1040 1.6965 -1.2124 5 1 1.2851 2.7465 0.0006 6 1 3.1038 1.6965 1.2126 7 6 2.0102 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0010 9 7 1.3256 -2.3880 0.0005 10 6 2.0581 -3.6568 0.0017 11 6 1.0640 -4.8197 0.0021 12 1 0.3594 -4.7079 0.8262 13 6 0.3074 -4.8668 -1.3370 14 6 0.6237 -6.2364 -1.9773 15 6 1.0223 -7.1309 -0.7772 16 1 0.1367 -7.5026 -0.2618 17 7 1.8694 -8.2424 -1.2169 18 6 1.3081 -9.4019 -1.6129 19 8 0.0980 -9.5258 -1.6047 20 6 2.1590 -10.5164 -2.0603 21 6 3.5165 -10.4528 -2.1029 22 16 4.1751 -11.9201 -2.6672 23 6 2.5884 -12.6442 -2.8629 24 17 2.3015 -14.2551 -3.4431 25 6 1.6371 -11.7879 -2.5051 26 6 1.8180 -6.1594 0.1294 27 1 -0.4850 0.8400 -0.0004 28 1 0.3557 -2.3881 0.0005 29 1 2.6842 -3.7141 0.8921 30 1 2.6855 -3.7149 -0.8879 31 1 -0.7651 -4.7782 -1.1632 32 1 0.6478 -4.0605 -1.9868 33 1 1.4539 -6.1457 -2.6777 34 1 -0.2566 -6.6395 -2.4779 35 1 2.8344 -8.1436 -1.2231 36 1 4.0990 -9.5897 -1.8162 37 1 0.5828 -12.0187 -2.5435 38 1 1.8071 -6.5066 1.1626 39 1 2.8423 -6.0563 -0.2285 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001755742547.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:43:31 Heat of formation + Delta-G solvation = -33.131719 kcal Electronic energy + Delta-G solvation = -22133.542195 eV Core-core repulsion = 18613.332130 eV Total energy + Delta-G solvation = -3520.210065 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 328.075 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.20087 -39.45845 -38.29765 -37.33037 -36.43880 -34.88300 -32.95943 -30.87815 -30.08316 -28.84618 -26.46512 -25.71319 -23.95037 -22.90861 -21.72466 -20.73993 -20.26876 -19.33356 -19.06662 -18.18863 -17.22844 -16.75492 -16.56008 -16.02212 -15.99976 -15.40402 -15.12614 -14.84699 -14.69119 -14.62441 -14.40157 -14.17923 -13.76587 -13.36859 -13.28686 -12.91421 -12.75461 -12.67585 -12.64008 -12.46803 -12.20950 -12.08434 -11.83805 -11.82517 -11.70611 -11.51343 -11.27303 -11.06489 -10.88727 -10.15339 -9.95288 -9.49706 -8.96380 -7.92920 -5.21336 -0.43237 -0.00713 0.66610 0.70619 1.09787 1.47975 1.51180 1.57298 2.13292 2.24065 2.57983 3.40397 3.56447 3.65923 3.80783 3.83610 3.94333 4.15177 4.22212 4.37300 4.46860 4.50676 4.54289 4.60039 4.67775 4.73534 4.80764 4.93132 4.96093 5.01839 5.14761 5.18125 5.26432 5.42003 5.48397 5.53295 5.58757 6.29380 6.51482 7.17906 7.35451 8.13876 8.35837 9.30556 Molecular weight = 328.08amu Principal moments of inertia in cm(-1) A = 0.036331 B = 0.001851 C = 0.001796 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 770.510068 B =15123.613737 C =15589.284726 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.971 5.971 2 C -0.079 4.079 3 Si 0.974 3.026 4 H -0.277 1.277 5 H -0.297 1.297 6 H -0.277 1.277 7 C -0.245 4.245 8 H 0.077 0.923 9 N -0.746 5.746 10 C 0.160 3.840 11 C -0.089 4.089 12 H 0.064 0.936 13 C -0.112 4.112 14 C -0.123 4.123 15 C 0.148 3.852 16 H 0.082 0.918 17 N -0.700 5.700 18 C 0.577 3.423 19 O -0.581 6.581 20 C -0.172 4.172 21 C -0.191 4.191 22 S 0.305 5.695 23 C -0.189 4.189 24 Cl -0.011 7.011 25 C -0.084 4.084 26 C -0.105 4.105 27 H 0.250 0.750 28 H 0.373 0.627 29 H 0.022 0.978 30 H 0.024 0.976 31 H 0.053 0.947 32 H 0.053 0.947 33 H 0.076 0.924 34 H 0.057 0.943 35 H 0.416 0.584 36 H 0.212 0.788 37 H 0.148 0.852 38 H 0.086 0.914 39 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.839 -29.871 -5.627 32.621 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.622 5.622 2 C -0.271 4.271 3 Si 0.803 3.197 4 H -0.203 1.203 5 H -0.224 1.224 6 H -0.203 1.203 7 C -0.376 4.376 8 H 0.095 0.905 9 N -0.389 5.389 10 C 0.034 3.966 11 C -0.109 4.109 12 H 0.083 0.917 13 C -0.150 4.150 14 C -0.161 4.161 15 C 0.043 3.957 16 H 0.100 0.900 17 N -0.351 5.351 18 C 0.364 3.636 19 O -0.462 6.462 20 C -0.190 4.190 21 C -0.329 4.329 22 S 0.570 5.430 23 C -0.332 4.332 24 Cl 0.018 6.982 25 C -0.115 4.115 26 C -0.143 4.143 27 H 0.059 0.941 28 H 0.205 0.795 29 H 0.040 0.960 30 H 0.042 0.958 31 H 0.072 0.928 32 H 0.072 0.928 33 H 0.095 0.905 34 H 0.076 0.924 35 H 0.254 0.746 36 H 0.228 0.772 37 H 0.166 0.834 38 H 0.105 0.895 39 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 12.604 -30.527 -5.920 33.553 hybrid contribution -1.729 1.689 0.181 2.423 sum 10.876 -28.838 -5.739 31.350 Atomic orbital electron populations 1.69819 1.06660 1.26065 1.59624 1.25595 0.96403 1.01209 1.03907 0.85199 0.77156 0.79109 0.78217 1.20331 1.22357 1.20326 1.19627 0.91552 0.85442 1.41023 0.90519 1.42604 1.05661 1.01291 1.89318 1.20918 0.93618 0.84448 0.97649 1.21761 0.97149 0.94423 0.97551 0.91738 1.22061 0.99682 0.96895 0.96379 1.22673 1.01479 0.94214 0.97771 1.21855 0.93965 0.85260 0.94643 0.90019 1.45665 1.11113 1.12258 1.66031 1.17835 0.86978 0.82362 0.76473 1.90797 1.16189 1.83117 1.56092 1.19798 0.93162 0.95309 1.10742 1.26253 0.97550 1.06004 1.03140 1.83103 1.01259 1.00510 1.58173 1.25292 1.00520 0.93645 1.13718 1.98385 1.95846 1.17152 1.86854 1.21128 1.00948 0.91086 0.98368 1.22498 0.99642 0.91897 1.00309 0.94104 0.79531 0.96005 0.95812 0.92839 0.92820 0.90528 0.92424 0.74646 0.77151 0.83416 0.89544 0.88815 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -59.93 13.06 21.65 0.28 -59.65 16 2 C -0.08 -4.56 5.50 84.86 0.47 -4.09 16 3 Si 0.97 46.07 29.55 68.60 2.03 48.10 16 4 H -0.28 -12.56 7.11 99.48 0.71 -11.86 16 5 H -0.30 -14.23 7.11 99.48 0.71 -13.52 16 6 H -0.28 -12.56 7.11 99.48 0.71 -11.85 16 7 C -0.24 -13.61 9.99 84.03 0.84 -12.77 16 8 H 0.08 4.05 7.83 -2.91 -0.02 4.03 16 9 N -0.75 -37.67 5.39 -343.45 -1.85 -39.52 16 10 C 0.16 6.06 5.27 86.38 0.46 6.51 16 11 C -0.09 -2.70 2.96 -10.07 -0.03 -2.73 16 12 H 0.06 2.09 8.14 -2.39 -0.02 2.08 16 13 C -0.11 -3.47 6.19 31.39 0.19 -3.27 16 14 C -0.12 -3.11 6.53 31.74 0.21 -2.90 16 15 C 0.15 3.26 3.22 46.28 0.15 3.41 16 16 H 0.08 2.13 7.62 -2.39 -0.02 2.11 16 17 N -0.70 -12.17 5.16 -439.90 -2.27 -14.44 16 18 C 0.58 12.91 7.79 86.59 0.67 13.59 16 19 O -0.58 -18.39 16.48 -4.17 -0.07 -18.46 16 20 C -0.17 -2.88 5.98 -19.87 -0.12 -3.00 16 21 C -0.19 -1.71 10.38 67.29 0.70 -1.01 16 22 S 0.30 2.43 23.02 -56.49 -1.30 1.13 16 23 C -0.19 -2.65 7.01 66.64 0.47 -2.18 16 24 Cl -0.01 -0.15 29.27 -2.72 -0.08 -0.23 16 25 C -0.08 -1.50 10.04 22.68 0.23 -1.28 16 26 C -0.11 -2.19 5.98 31.67 0.19 -2.00 16 27 H 0.25 15.03 8.31 -92.71 -0.77 14.26 16 28 H 0.37 20.24 7.55 -92.71 -0.70 19.54 16 29 H 0.02 0.82 8.14 -2.39 -0.02 0.80 16 30 H 0.02 0.89 8.14 -2.38 -0.02 0.87 16 31 H 0.05 1.73 8.14 -2.39 -0.02 1.71 16 32 H 0.05 1.93 7.61 -2.39 -0.02 1.91 16 33 H 0.08 1.78 8.14 -2.39 -0.02 1.76 16 34 H 0.06 1.58 8.14 -2.39 -0.02 1.56 16 35 H 0.42 4.13 7.04 -92.71 -0.65 3.48 16 36 H 0.21 0.39 7.01 -2.91 -0.02 0.37 16 37 H 0.15 2.95 8.06 -2.91 -0.02 2.93 16 38 H 0.09 1.60 8.14 -2.39 -0.02 1.58 16 39 H 0.09 1.60 7.73 -2.39 -0.02 1.58 16 Total: -1.00 -72.37 355.84 0.90 -71.47 By element: Atomic # 1 Polarization: 23.59 SS G_CDS: -0.26 Total: 23.33 kcal Atomic # 6 Polarization: -16.15 SS G_CDS: 4.42 Total: -11.73 kcal Atomic # 7 Polarization: -109.77 SS G_CDS: -3.84 Total: -113.61 kcal Atomic # 8 Polarization: -18.39 SS G_CDS: -0.07 Total: -18.46 kcal Atomic # 14 Polarization: 46.07 SS G_CDS: 2.03 Total: 48.10 kcal Atomic # 16 Polarization: 2.43 SS G_CDS: -1.30 Total: 1.13 kcal Atomic # 17 Polarization: -0.15 SS G_CDS: -0.08 Total: -0.23 kcal Total: -72.37 0.90 -71.47 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755742547.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.341 kcal (2) G-P(sol) polarization free energy of solvation -72.373 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.031 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.900 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.473 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.132 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds