Wall clock time and date at job start Tue Mar 31 2020 15:43:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86800 * 120.00259 * 2 1 4 4 H 1.48501 * 109.47055 * 0.02562 * 3 2 1 5 5 H 1.48505 * 109.46653 * 119.99764 * 3 2 1 6 6 H 1.48495 * 109.47483 * 240.00126 * 3 2 1 7 7 C 1.38816 * 119.99569 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99460 * 180.02562 * 7 2 1 9 9 N 1.36935 * 120.00401 * 0.02562 * 7 2 1 10 10 C 1.46490 * 120.00121 * 180.02562 * 9 7 2 11 11 C 1.53001 * 109.47264 * 179.97438 * 10 9 7 12 12 H 1.08999 * 110.67279 * 51.76463 * 11 10 9 13 13 C 1.54889 * 110.75493 * 288.32759 * 11 10 9 14 14 C 1.54267 * 104.19467 * 203.73936 * 13 11 10 15 15 C 1.53882 * 106.59905 * 23.60979 * 14 13 11 16 16 H 1.08999 * 110.07629 * 240.69085 * 15 14 13 17 17 N 1.46497 * 110.03135 * 119.28141 * 15 14 13 18 18 C 1.34783 * 120.00200 * 87.83540 * 17 15 14 19 19 O 1.21646 * 119.99383 * 0.02562 * 18 17 15 20 20 C 1.47179 * 120.00474 * 180.02562 * 18 17 15 21 21 C 1.35975 * 123.45515 * 0.02562 * 20 18 17 22 22 S 1.70436 * 110.84387 * 179.97438 * 21 20 18 23 23 C 1.75496 * 92.45859 * 359.97438 * 22 21 20 24 24 Cl 1.73601 * 124.72188 * 179.97438 * 23 22 21 25 25 C 1.32889 * 110.55898 * 359.74040 * 23 22 21 26 26 C 1.54271 * 106.59787 * 0.02562 * 15 14 13 27 27 H 0.97001 * 119.99885 * 179.97438 * 1 2 3 28 28 H 0.97000 * 119.99302 * 359.97438 * 9 7 2 29 29 H 1.09003 * 109.47433 * 299.99456 * 10 9 7 30 30 H 1.08999 * 109.47686 * 59.99159 * 10 9 7 31 31 H 1.08991 * 110.48509 * 322.41625 * 13 11 10 32 32 H 1.09000 * 110.48667 * 85.06464 * 13 11 10 33 33 H 1.09004 * 110.03497 * 264.33095 * 14 13 11 34 34 H 1.09002 * 110.07586 * 142.91642 * 14 13 11 35 35 H 0.97002 * 120.00109 * 267.83498 * 17 15 14 36 36 H 1.07999 * 124.57232 * 359.95584 * 21 20 18 37 37 H 1.08005 * 123.47390 * 180.22275 * 25 23 22 38 38 H 1.08998 * 110.48457 * 217.71095 * 26 15 14 39 39 H 1.08997 * 110.48626 * 95.06807 * 26 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 1.2853 2.7465 0.0006 5 1 3.1040 1.6962 1.2126 6 1 3.1040 1.6964 -1.2124 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0001 9 7 1.3256 -2.3881 -0.0016 10 6 2.0580 -3.6568 -0.0016 11 6 1.0637 -4.8197 -0.0022 12 1 0.3343 -4.7019 -0.8035 13 6 0.3603 -4.9413 1.3724 14 6 -0.0929 -6.4144 1.4364 15 6 0.8249 -7.1986 0.4821 16 1 0.2339 -7.6659 -0.3056 17 7 1.5665 -8.2201 1.2255 18 6 1.0299 -9.4429 1.4088 19 8 -0.0700 -9.6983 0.9565 20 6 1.7748 -10.4690 2.1561 21 6 3.0069 -10.2597 2.6917 22 16 3.5686 -11.6591 3.4861 23 6 2.1129 -12.5576 3.0940 24 17 1.8145 -14.2053 3.5518 25 6 1.2688 -11.7995 2.4021 26 6 1.8042 -6.1746 -0.1281 27 1 -0.4850 -0.8401 -0.0004 28 1 0.3556 -2.3880 -0.0016 29 1 2.6853 -3.7142 -0.8912 30 1 2.6841 -3.7150 0.8887 31 1 1.0594 -4.7218 2.1793 32 1 -0.5008 -4.2748 1.4205 33 1 -1.1299 -6.5006 1.1119 34 1 0.0129 -6.7946 2.4525 35 1 2.4438 -8.0165 1.5859 36 1 3.5557 -9.3320 2.6227 37 1 0.3054 -12.1439 2.0559 38 1 1.9965 -6.4080 -1.1753 39 1 2.7362 -6.1547 0.4367 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001755742548.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:43:35 Heat of formation + Delta-G solvation = -32.916434 kcal Electronic energy + Delta-G solvation = -22185.269155 eV Core-core repulsion = 18665.068425 eV Total energy + Delta-G solvation = -3520.200730 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 328.075 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.28279 -39.49803 -38.32110 -37.36071 -36.74485 -34.97605 -32.94377 -30.87624 -30.07516 -28.83756 -26.34722 -25.69399 -24.19940 -22.95791 -21.57716 -20.98302 -20.36196 -19.40302 -19.24542 -18.22189 -17.44331 -16.84441 -16.45339 -16.05133 -15.93031 -15.67931 -15.07079 -15.01767 -14.87114 -14.64186 -14.60716 -14.26707 -13.78225 -13.63168 -12.97819 -12.86488 -12.69731 -12.65611 -12.59874 -12.56742 -12.08846 -11.87745 -11.84389 -11.80315 -11.70569 -11.54224 -11.20174 -11.07328 -10.89657 -10.21976 -9.97855 -9.52550 -9.08819 -8.39113 -5.32401 -0.45917 -0.03021 0.64286 0.68037 1.07581 1.58980 1.69283 1.85600 2.11124 2.20898 2.72785 3.40192 3.48169 3.52003 3.77512 3.78557 3.89822 4.00315 4.12538 4.33237 4.42566 4.44974 4.49543 4.52642 4.56729 4.67882 4.70328 4.84818 4.92762 4.95312 5.05636 5.08062 5.13794 5.28164 5.43740 5.52715 5.59807 6.46819 6.50154 7.11253 7.13808 8.02345 8.13234 9.12998 Molecular weight = 328.08amu Principal moments of inertia in cm(-1) A = 0.034441 B = 0.001875 C = 0.001816 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 812.796859 B =14932.872022 C =15414.389326 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.976 5.976 2 C -0.108 4.108 3 Si 1.129 2.871 4 H -0.294 1.294 5 H -0.276 1.276 6 H -0.277 1.277 7 C -0.334 4.334 8 H 0.068 0.932 9 N -0.757 5.757 10 C 0.166 3.834 11 C -0.093 4.093 12 H 0.066 0.934 13 C -0.107 4.107 14 C -0.125 4.125 15 C 0.150 3.850 16 H 0.081 0.919 17 N -0.702 5.702 18 C 0.577 3.423 19 O -0.580 6.580 20 C -0.172 4.172 21 C -0.192 4.192 22 S 0.305 5.695 23 C -0.188 4.188 24 Cl -0.010 7.010 25 C -0.084 4.084 26 C -0.106 4.106 27 H 0.243 0.757 28 H 0.360 0.640 29 H 0.019 0.981 30 H 0.024 0.976 31 H 0.066 0.934 32 H 0.046 0.954 33 H 0.061 0.939 34 H 0.071 0.929 35 H 0.414 0.586 36 H 0.210 0.790 37 H 0.149 0.851 38 H 0.084 0.916 39 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.530 -29.177 8.379 32.131 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.624 5.624 2 C -0.299 4.299 3 Si 0.953 3.047 4 H -0.220 1.220 5 H -0.202 1.202 6 H -0.203 1.203 7 C -0.466 4.466 8 H 0.086 0.914 9 N -0.402 5.402 10 C 0.040 3.960 11 C -0.112 4.112 12 H 0.085 0.915 13 C -0.145 4.145 14 C -0.164 4.164 15 C 0.045 3.955 16 H 0.099 0.901 17 N -0.354 5.354 18 C 0.363 3.637 19 O -0.461 6.461 20 C -0.190 4.190 21 C -0.331 4.331 22 S 0.570 5.430 23 C -0.331 4.331 24 Cl 0.018 6.982 25 C -0.115 4.115 26 C -0.144 4.144 27 H 0.053 0.947 28 H 0.192 0.808 29 H 0.037 0.963 30 H 0.042 0.958 31 H 0.084 0.916 32 H 0.065 0.935 33 H 0.080 0.920 34 H 0.089 0.911 35 H 0.252 0.748 36 H 0.227 0.773 37 H 0.167 0.833 38 H 0.103 0.897 39 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 11.171 -28.252 8.888 31.654 hybrid contribution -1.766 -1.189 -0.749 2.257 sum 9.405 -29.442 8.139 31.961 Atomic orbital electron populations 1.70996 1.07214 1.27826 1.56402 1.27258 0.97148 1.04810 1.00684 0.82617 0.73357 0.71483 0.77202 1.22044 1.20227 1.20328 1.20416 0.92433 0.87204 1.46501 0.91435 1.42602 1.04839 1.02113 1.90639 1.20742 0.93571 0.84062 0.97625 1.22168 0.97241 0.94120 0.97661 0.91543 1.22259 0.99639 0.95613 0.96962 1.22498 0.99395 0.94441 1.00018 1.21511 0.93054 0.87541 0.93395 0.90108 1.45876 1.22245 1.11120 1.56120 1.17835 0.84861 0.82109 0.78852 1.90794 1.22138 1.81180 1.51993 1.19806 0.96627 0.94957 1.07646 1.26246 0.98749 1.06688 1.01402 1.83110 1.12707 0.97956 1.49220 1.25290 1.03350 0.93286 1.11219 1.98385 1.95420 1.13361 1.90989 1.21124 1.00797 0.91567 0.98012 1.22523 0.98220 0.91406 1.02249 0.94660 0.80841 0.96314 0.95759 0.91564 0.93549 0.91973 0.91065 0.74778 0.77313 0.83341 0.89705 0.88759 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.98 -61.75 13.70 21.65 0.30 -61.46 16 2 C -0.11 -6.32 5.50 84.86 0.47 -5.86 16 3 Si 1.13 51.87 29.92 68.60 2.05 53.92 16 4 H -0.29 -13.88 7.11 99.48 0.71 -13.17 16 5 H -0.28 -11.70 7.11 99.48 0.71 -11.00 16 6 H -0.28 -11.79 7.11 99.48 0.71 -11.09 16 7 C -0.33 -18.89 9.99 84.03 0.84 -18.05 16 8 H 0.07 3.69 7.83 -2.91 -0.02 3.67 16 9 N -0.76 -38.29 5.52 -343.47 -1.90 -40.18 16 10 C 0.17 6.37 5.70 86.38 0.49 6.86 16 11 C -0.09 -2.76 2.91 -9.49 -0.03 -2.79 16 12 H 0.07 2.15 8.14 -2.39 -0.02 2.13 16 13 C -0.11 -3.11 6.20 31.67 0.20 -2.91 16 14 C -0.12 -3.08 6.59 31.32 0.21 -2.88 16 15 C 0.15 3.26 3.25 45.72 0.15 3.41 16 16 H 0.08 2.03 7.56 -2.39 -0.02 2.01 16 17 N -0.70 -12.32 4.95 -442.56 -2.19 -14.51 16 18 C 0.58 12.85 7.79 86.59 0.67 13.53 16 19 O -0.58 -18.11 16.45 -4.18 -0.07 -18.18 16 20 C -0.17 -2.90 5.98 -19.87 -0.12 -3.02 16 21 C -0.19 -1.80 10.38 67.29 0.70 -1.10 16 22 S 0.31 2.52 23.02 -56.49 -1.30 1.22 16 23 C -0.19 -2.66 7.01 66.64 0.47 -2.19 16 24 Cl -0.01 -0.14 29.27 -2.72 -0.08 -0.22 16 25 C -0.08 -1.49 10.04 22.68 0.23 -1.27 16 26 C -0.11 -2.22 5.97 31.68 0.19 -2.03 16 27 H 0.24 15.35 6.77 -92.71 -0.63 14.72 16 28 H 0.36 19.00 6.50 -92.71 -0.60 18.40 16 29 H 0.02 0.73 8.14 -2.39 -0.02 0.71 16 30 H 0.02 0.92 7.99 -2.39 -0.02 0.90 16 31 H 0.07 1.93 7.93 -2.39 -0.02 1.91 16 32 H 0.05 1.55 8.14 -2.39 -0.02 1.53 16 33 H 0.06 1.64 8.14 -2.39 -0.02 1.62 16 34 H 0.07 1.68 7.92 -2.39 -0.02 1.66 16 35 H 0.41 4.41 6.85 -92.71 -0.64 3.77 16 36 H 0.21 0.53 7.01 -2.91 -0.02 0.51 16 37 H 0.15 2.94 8.06 -2.91 -0.02 2.91 16 38 H 0.08 1.65 8.14 -2.39 -0.02 1.63 16 39 H 0.09 1.61 7.64 -2.39 -0.02 1.59 16 Total: -1.00 -74.54 354.23 1.27 -73.27 By element: Atomic # 1 Polarization: 24.43 SS G_CDS: 0.00 Total: 24.43 kcal Atomic # 6 Polarization: -22.74 SS G_CDS: 4.46 Total: -18.28 kcal Atomic # 7 Polarization: -112.36 SS G_CDS: -3.79 Total: -116.15 kcal Atomic # 8 Polarization: -18.11 SS G_CDS: -0.07 Total: -18.18 kcal Atomic # 14 Polarization: 51.87 SS G_CDS: 2.05 Total: 53.92 kcal Atomic # 16 Polarization: 2.52 SS G_CDS: -1.30 Total: 1.22 kcal Atomic # 17 Polarization: -0.14 SS G_CDS: -0.08 Total: -0.22 kcal Total: -74.54 1.27 -73.27 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755742548.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.349 kcal (2) G-P(sol) polarization free energy of solvation -74.536 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.187 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.271 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.265 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.916 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds