Wall clock time and date at job start Tue Mar 31 2020 15:43:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86798 * 119.99771 * 2 1 4 4 H 1.48504 * 109.47305 * 269.99804 * 3 2 1 5 5 H 1.48500 * 109.47327 * 30.00031 * 3 2 1 6 6 H 1.48505 * 109.47437 * 149.99941 * 3 2 1 7 7 C 1.38811 * 120.00674 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99364 * 0.02562 * 7 2 1 9 9 N 1.36932 * 120.00563 * 180.02562 * 7 2 1 10 10 C 1.46504 * 119.99865 * 180.02562 * 9 7 2 11 11 C 1.53001 * 109.46834 * 179.97438 * 10 9 7 12 12 H 1.09001 * 110.67717 * 56.77794 * 11 10 9 13 13 C 1.54891 * 110.75588 * 293.54625 * 11 10 9 14 14 C 1.54263 * 104.19643 * 203.55827 * 13 11 10 15 15 C 1.53873 * 106.59863 * 23.61136 * 14 13 11 16 16 H 1.09004 * 110.03772 * 119.33043 * 15 14 13 17 17 N 1.46505 * 110.03412 * 240.71352 * 15 14 13 18 18 C 1.34773 * 120.00127 * 272.90762 * 17 15 14 19 19 O 1.21639 * 119.99969 * 359.97438 * 18 17 15 20 20 C 1.47184 * 120.00148 * 179.97438 * 18 17 15 21 21 C 1.35974 * 123.45296 * 0.05707 * 20 18 17 22 22 S 1.70439 * 110.84415 * 179.97438 * 21 20 18 23 23 C 1.75509 * 92.45569 * 359.97438 * 22 21 20 24 24 Cl 1.73596 * 124.71739 * 179.97438 * 23 22 21 25 25 C 1.32889 * 110.55993 * 0.02562 * 23 22 21 26 26 C 1.54266 * 106.64023 * 0.02562 * 15 14 13 27 27 H 0.97001 * 120.00168 * 359.97438 * 1 2 3 28 28 H 0.97003 * 119.99820 * 359.97438 * 9 7 2 29 29 H 1.09000 * 109.47353 * 59.99898 * 10 9 7 30 30 H 1.08991 * 109.47142 * 299.99654 * 10 9 7 31 31 H 1.09001 * 110.49246 * 84.88038 * 13 11 10 32 32 H 1.09002 * 110.60115 * 322.29005 * 13 11 10 33 33 H 1.08998 * 110.03466 * 264.32568 * 14 13 11 34 34 H 1.09007 * 110.07389 * 142.91246 * 14 13 11 35 35 H 0.96998 * 119.99789 * 92.90039 * 17 15 14 36 36 H 1.08002 * 124.57706 * 359.97438 * 21 20 18 37 37 H 1.08001 * 123.47314 * 179.97438 * 25 23 22 38 38 H 1.08998 * 110.48719 * 95.04799 * 26 15 14 39 39 H 1.09003 * 110.48960 * 217.69254 * 26 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4976 2.0465 -1.4001 5 1 1.4475 2.6527 0.7000 6 1 3.5477 1.4403 0.7001 7 6 2.0104 -1.2021 -0.0005 8 1 1.4703 -2.1374 -0.0014 9 7 3.3797 -1.2020 0.0000 10 6 4.1122 -2.4708 -0.0011 11 6 5.6164 -2.1911 -0.0009 12 1 5.8927 -1.5722 0.8528 13 6 6.0503 -1.5208 -1.3281 14 6 7.5523 -1.8525 -1.4461 15 6 7.7902 -3.1189 -0.6051 16 1 8.1663 -3.9225 -1.2383 17 7 8.7469 -2.8364 0.4679 18 6 10.0699 -2.9528 0.2390 19 8 10.4697 -3.2928 -0.8583 20 6 11.0311 -2.6685 1.3168 21 6 10.6622 -2.2851 2.5682 22 16 12.0299 -2.0427 3.5560 23 6 13.1348 -2.4669 2.2600 24 17 14.8648 -2.4873 2.4027 25 6 12.4629 -2.7691 1.1541 26 6 6.4248 -3.5138 -0.0054 27 1 -0.4850 0.8400 0.0004 28 1 3.8647 -0.3619 0.0004 29 1 3.8492 -3.0414 -0.8918 30 1 3.8486 -3.0433 0.8881 31 1 5.9007 -0.4423 -1.2776 32 1 5.4994 -1.9424 -2.1688 33 1 8.1486 -1.0277 -1.0560 34 1 7.8130 -2.0415 -2.4875 35 1 8.4280 -2.5655 1.3430 36 1 9.6406 -2.1521 2.8924 37 1 12.9384 -3.0598 0.2289 38 1 5.9343 -4.2591 -0.6315 39 1 6.5486 -3.8893 1.0104 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001755742549.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:43:39 Heat of formation + Delta-G solvation = -7.593406 kcal Electronic energy + Delta-G solvation = -22373.628143 eV Core-core repulsion = 18854.525502 eV Total energy + Delta-G solvation = -3519.102641 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 328.075 amu Computer time = 1.85 seconds Orbital eigenvalues (eV) -40.42256 -38.51332 -37.60239 -36.68903 -35.02351 -33.49390 -31.41802 -30.16732 -29.10347 -27.94327 -25.49424 -24.47039 -22.22345 -21.89959 -20.31631 -19.89252 -19.80345 -18.71605 -17.63341 -17.47027 -16.31418 -15.48207 -15.35113 -14.93593 -14.63009 -14.40465 -14.14770 -14.08355 -13.83733 -13.43078 -13.31006 -13.16560 -12.64900 -12.36934 -12.14809 -12.09899 -11.88324 -11.67879 -11.30065 -11.21681 -10.98482 -10.88937 -10.56897 -10.44357 -10.37245 -10.17394 -10.07070 -9.60075 -9.42531 -9.30405 -8.97437 -8.90411 -7.23509 -5.77928 -3.13050 0.11803 0.50356 1.20487 1.38255 1.64476 2.93158 3.01541 3.34949 3.37885 3.43462 4.26502 4.45619 4.57263 4.58936 4.64653 4.72885 4.90549 5.10026 5.25490 5.31448 5.42676 5.50414 5.52583 5.54920 5.62560 5.71421 5.75074 5.87237 5.96865 5.98896 6.15790 6.31988 6.40584 6.47316 6.66376 6.78890 7.23998 7.94608 7.98745 8.41335 9.20791 9.93191 10.13288 11.40602 Molecular weight = 328.08amu Principal moments of inertia in cm(-1) A = 0.021869 B = 0.002213 C = 0.002114 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1280.064110 B =12647.699355 C =13243.005455 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C 0.003 3.997 3 Si 0.885 3.115 4 H -0.284 1.284 5 H -0.291 1.291 6 H -0.278 1.278 7 C -0.243 4.243 8 H 0.090 0.910 9 N -0.755 5.755 10 C 0.165 3.835 11 C -0.102 4.102 12 H 0.073 0.927 13 C -0.116 4.116 14 C -0.133 4.133 15 C 0.142 3.858 16 H 0.092 0.908 17 N -0.714 5.714 18 C 0.577 3.423 19 O -0.534 6.534 20 C -0.144 4.144 21 C -0.208 4.208 22 S 0.243 5.757 23 C -0.175 4.175 24 Cl -0.010 7.010 25 C -0.068 4.068 26 C -0.122 4.122 27 H 0.259 0.741 28 H 0.360 0.640 29 H 0.028 0.972 30 H 0.025 0.975 31 H 0.065 0.935 32 H 0.073 0.927 33 H 0.065 0.935 34 H 0.069 0.931 35 H 0.399 0.601 36 H 0.180 0.820 37 H 0.163 0.837 38 H 0.086 0.914 39 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 29.146 -6.198 7.032 30.616 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.583 5.583 2 C -0.193 4.193 3 Si 0.715 3.285 4 H -0.211 1.211 5 H -0.218 1.218 6 H -0.204 1.204 7 C -0.373 4.373 8 H 0.107 0.893 9 N -0.401 5.401 10 C 0.038 3.962 11 C -0.121 4.121 12 H 0.091 0.909 13 C -0.153 4.153 14 C -0.172 4.172 15 C 0.038 3.962 16 H 0.110 0.890 17 N -0.365 5.365 18 C 0.362 3.638 19 O -0.411 6.411 20 C -0.162 4.162 21 C -0.347 4.347 22 S 0.507 5.493 23 C -0.318 4.318 24 Cl 0.019 6.981 25 C -0.099 4.099 26 C -0.161 4.161 27 H 0.069 0.931 28 H 0.193 0.807 29 H 0.046 0.954 30 H 0.043 0.957 31 H 0.084 0.916 32 H 0.092 0.908 33 H 0.084 0.916 34 H 0.088 0.912 35 H 0.234 0.766 36 H 0.197 0.803 37 H 0.181 0.819 38 H 0.104 0.896 39 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 29.546 -6.103 7.744 31.148 hybrid contribution 0.232 1.028 -1.017 1.464 sum 29.778 -5.074 6.728 30.947 Atomic orbital electron populations 1.69700 1.05092 1.25790 1.57696 1.24680 0.95246 0.97203 1.02171 0.86545 0.79133 0.85020 0.77789 1.21067 1.21764 1.20431 1.19067 0.80722 0.94698 1.42803 0.89263 1.42692 1.03968 1.02273 1.91143 1.20614 0.87795 0.89258 0.98565 1.22400 0.96306 0.95550 0.97858 0.90875 1.22384 0.94000 1.00939 0.98008 1.22606 0.97378 0.97045 1.00158 1.21709 0.88324 0.97967 0.88232 0.89029 1.46048 1.05326 1.69542 1.15619 1.17470 0.82031 0.77381 0.86893 1.90811 1.78869 1.47056 1.24390 1.20076 0.93541 1.08380 0.94234 1.25855 1.05512 1.05252 0.98070 1.83267 0.91622 1.63653 1.10732 1.25126 0.90826 1.15500 1.00360 1.98386 1.04757 1.97312 1.97650 1.21156 0.91264 0.98679 0.98762 1.22687 0.93544 0.98445 1.01415 0.93079 0.80702 0.95365 0.95670 0.91642 0.90843 0.91632 0.91204 0.76648 0.80306 0.81918 0.89589 0.90952 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 38. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -29.30 13.97 55.49 0.78 -28.53 16 2 C 0.00 0.08 5.50 -17.43 -0.10 -0.02 16 3 Si 0.88 21.95 27.73 -169.99 -4.71 17.24 16 4 H -0.28 -7.01 7.11 56.52 0.40 -6.61 16 5 H -0.29 -7.33 7.11 56.52 0.40 -6.93 16 6 H -0.28 -6.44 6.52 56.52 0.37 -6.07 16 7 C -0.24 -6.83 10.47 -15.06 -0.16 -6.98 16 8 H 0.09 2.69 8.06 -52.48 -0.42 2.26 16 9 N -0.76 -17.49 5.25 -59.91 -0.31 -17.81 16 10 C 0.16 3.00 5.71 -4.04 -0.02 2.98 16 11 C -0.10 -1.39 2.96 -88.56 -0.26 -1.66 16 12 H 0.07 0.99 8.14 -51.93 -0.42 0.56 16 13 C -0.12 -1.57 5.96 -25.07 -0.15 -1.72 16 14 C -0.13 -1.57 6.59 -25.62 -0.17 -1.74 16 15 C 0.14 1.53 3.23 -66.81 -0.22 1.31 16 16 H 0.09 1.07 7.59 -51.93 -0.39 0.68 16 17 N -0.71 -6.82 4.91 -53.87 -0.26 -7.08 16 18 C 0.58 6.53 7.78 -12.63 -0.10 6.43 16 19 O -0.53 -7.93 16.46 5.24 0.09 -7.84 16 20 C -0.14 -1.31 5.98 -104.63 -0.63 -1.94 16 21 C -0.21 -1.36 10.38 29.92 0.31 -1.05 16 22 S 0.24 1.44 23.02 -107.50 -2.47 -1.04 16 23 C -0.18 -1.36 7.01 28.89 0.20 -1.16 16 24 Cl -0.01 -0.07 29.27 -51.86 -1.52 -1.59 16 25 C -0.07 -0.61 10.04 -38.98 -0.39 -1.00 16 26 C -0.12 -1.30 5.89 -25.00 -0.15 -1.45 16 27 H 0.26 7.73 8.31 -40.82 -0.34 7.39 16 28 H 0.36 8.14 5.39 -40.82 -0.22 7.92 16 29 H 0.03 0.53 8.10 -51.93 -0.42 0.11 16 30 H 0.03 0.47 8.14 -51.93 -0.42 0.05 16 31 H 0.06 0.96 8.14 -51.93 -0.42 0.53 16 32 H 0.07 1.05 8.02 -51.93 -0.42 0.63 16 33 H 0.06 0.79 7.92 -51.93 -0.41 0.38 16 34 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 35 H 0.40 2.87 7.06 -40.82 -0.29 2.58 16 36 H 0.18 0.73 7.01 -52.49 -0.37 0.36 16 37 H 0.16 1.48 8.06 -52.49 -0.42 1.06 16 38 H 0.09 0.90 8.05 -51.93 -0.42 0.48 16 39 H 0.07 0.67 7.98 -51.93 -0.41 0.26 16 LS Contribution 352.97 15.07 5.32 5.32 Total: -1.00 -33.30 352.97 -9.98 -43.28 By element: Atomic # 1 Polarization: 11.10 SS G_CDS: -5.06 Total: 6.05 kcal Atomic # 6 Polarization: -6.18 SS G_CDS: -1.82 Total: -8.00 kcal Atomic # 7 Polarization: -53.61 SS G_CDS: 0.20 Total: -53.42 kcal Atomic # 8 Polarization: -7.93 SS G_CDS: 0.09 Total: -7.84 kcal Atomic # 14 Polarization: 21.95 SS G_CDS: -4.71 Total: 17.24 kcal Atomic # 16 Polarization: 1.44 SS G_CDS: -2.47 Total: -1.04 kcal Atomic # 17 Polarization: -0.07 SS G_CDS: -1.52 Total: -1.59 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -33.30 -9.98 -43.28 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755742549.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.686 kcal (2) G-P(sol) polarization free energy of solvation -33.295 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.390 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.984 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.279 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.593 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.85 seconds