Wall clock time and date at job start Tue Mar 31 2020 15:43:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86798 * 119.99771 * 2 1 4 4 H 1.48504 * 109.47305 * 269.99804 * 3 2 1 5 5 H 1.48500 * 109.47327 * 30.00031 * 3 2 1 6 6 H 1.48505 * 109.47437 * 149.99941 * 3 2 1 7 7 C 1.38811 * 120.00674 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99364 * 0.02562 * 7 2 1 9 9 N 1.36932 * 120.00563 * 180.02562 * 7 2 1 10 10 C 1.46504 * 119.99865 * 180.02562 * 9 7 2 11 11 C 1.53001 * 109.46834 * 179.97438 * 10 9 7 12 12 H 1.09001 * 110.67717 * 56.77794 * 11 10 9 13 13 C 1.54891 * 110.75588 * 293.54625 * 11 10 9 14 14 C 1.54263 * 104.19643 * 203.55827 * 13 11 10 15 15 C 1.53873 * 106.59863 * 23.61136 * 14 13 11 16 16 H 1.09004 * 110.03772 * 119.33043 * 15 14 13 17 17 N 1.46505 * 110.03412 * 240.71352 * 15 14 13 18 18 C 1.34773 * 120.00127 * 272.90762 * 17 15 14 19 19 O 1.21639 * 119.99969 * 359.97438 * 18 17 15 20 20 C 1.47184 * 120.00148 * 179.97438 * 18 17 15 21 21 C 1.35974 * 123.45296 * 0.05707 * 20 18 17 22 22 S 1.70439 * 110.84415 * 179.97438 * 21 20 18 23 23 C 1.75509 * 92.45569 * 359.97438 * 22 21 20 24 24 Cl 1.73596 * 124.71739 * 179.97438 * 23 22 21 25 25 C 1.32889 * 110.55993 * 0.02562 * 23 22 21 26 26 C 1.54266 * 106.64023 * 0.02562 * 15 14 13 27 27 H 0.97001 * 120.00168 * 359.97438 * 1 2 3 28 28 H 0.97003 * 119.99820 * 359.97438 * 9 7 2 29 29 H 1.09000 * 109.47353 * 59.99898 * 10 9 7 30 30 H 1.08991 * 109.47142 * 299.99654 * 10 9 7 31 31 H 1.09001 * 110.49246 * 84.88038 * 13 11 10 32 32 H 1.09002 * 110.60115 * 322.29005 * 13 11 10 33 33 H 1.08998 * 110.03466 * 264.32568 * 14 13 11 34 34 H 1.09007 * 110.07389 * 142.91246 * 14 13 11 35 35 H 0.96998 * 119.99789 * 92.90039 * 17 15 14 36 36 H 1.08002 * 124.57706 * 359.97438 * 21 20 18 37 37 H 1.08001 * 123.47314 * 179.97438 * 25 23 22 38 38 H 1.08998 * 110.48719 * 95.04799 * 26 15 14 39 39 H 1.09003 * 110.48960 * 217.69254 * 26 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4976 2.0465 -1.4001 5 1 1.4475 2.6527 0.7000 6 1 3.5477 1.4403 0.7001 7 6 2.0104 -1.2021 -0.0005 8 1 1.4703 -2.1374 -0.0014 9 7 3.3797 -1.2020 0.0000 10 6 4.1122 -2.4708 -0.0011 11 6 5.6164 -2.1911 -0.0009 12 1 5.8927 -1.5722 0.8528 13 6 6.0503 -1.5208 -1.3281 14 6 7.5523 -1.8525 -1.4461 15 6 7.7902 -3.1189 -0.6051 16 1 8.1663 -3.9225 -1.2383 17 7 8.7469 -2.8364 0.4679 18 6 10.0699 -2.9528 0.2390 19 8 10.4697 -3.2928 -0.8583 20 6 11.0311 -2.6685 1.3168 21 6 10.6622 -2.2851 2.5682 22 16 12.0299 -2.0427 3.5560 23 6 13.1348 -2.4669 2.2600 24 17 14.8648 -2.4873 2.4027 25 6 12.4629 -2.7691 1.1541 26 6 6.4248 -3.5138 -0.0054 27 1 -0.4850 0.8400 0.0004 28 1 3.8647 -0.3619 0.0004 29 1 3.8492 -3.0414 -0.8918 30 1 3.8486 -3.0433 0.8881 31 1 5.9007 -0.4423 -1.2776 32 1 5.4994 -1.9424 -2.1688 33 1 8.1486 -1.0277 -1.0560 34 1 7.8130 -2.0415 -2.4875 35 1 8.4280 -2.5655 1.3430 36 1 9.6406 -2.1521 2.8924 37 1 12.9384 -3.0598 0.2289 38 1 5.9343 -4.2591 -0.6315 39 1 6.5486 -3.8893 1.0104 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001755742549.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:43:39 Heat of formation + Delta-G solvation = -29.125888 kcal Electronic energy + Delta-G solvation = -22374.561861 eV Core-core repulsion = 18854.525502 eV Total energy + Delta-G solvation = -3520.036359 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 328.075 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.26115 -39.45005 -38.29634 -37.33980 -36.57808 -34.75878 -33.28368 -30.96472 -30.30071 -28.96412 -26.46620 -25.74505 -23.71059 -22.93035 -21.23625 -21.10753 -20.50944 -19.58047 -19.30423 -18.22817 -17.18163 -16.66118 -16.34612 -16.15016 -15.96316 -15.60057 -15.08077 -14.91740 -14.64975 -14.60065 -14.52454 -14.40616 -13.80633 -13.60852 -13.53784 -12.94631 -12.86231 -12.66309 -12.60472 -12.28106 -12.17438 -11.95511 -11.83262 -11.81395 -11.64595 -11.60206 -11.46189 -11.04239 -10.94762 -10.17956 -9.96501 -9.51339 -9.26207 -8.01458 -5.34119 -0.44237 -0.01824 0.66055 0.70220 1.08815 1.37554 1.41904 1.49075 2.16856 2.24416 2.49358 3.30087 3.47594 3.55286 3.79643 3.84917 3.89591 4.00082 4.14282 4.43217 4.49225 4.51006 4.53624 4.60104 4.69400 4.71066 4.76703 4.86937 4.95743 5.08344 5.09049 5.16693 5.21602 5.34682 5.53827 5.58350 5.77836 6.22947 6.50623 7.10363 7.17165 7.87645 8.06519 9.20241 Molecular weight = 328.08amu Principal moments of inertia in cm(-1) A = 0.021869 B = 0.002213 C = 0.002114 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1280.064110 B =12647.699355 C =13243.005455 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.985 5.985 2 C -0.068 4.068 3 Si 0.956 3.044 4 H -0.280 1.280 5 H -0.297 1.297 6 H -0.248 1.248 7 C -0.233 4.233 8 H 0.055 0.945 9 N -0.757 5.757 10 C 0.160 3.840 11 C -0.093 4.093 12 H 0.084 0.916 13 C -0.116 4.116 14 C -0.125 4.125 15 C 0.148 3.852 16 H 0.083 0.917 17 N -0.703 5.703 18 C 0.577 3.423 19 O -0.579 6.579 20 C -0.171 4.171 21 C -0.193 4.193 22 S 0.300 5.700 23 C -0.189 4.189 24 Cl -0.010 7.010 25 C -0.083 4.083 26 C -0.110 4.110 27 H 0.257 0.743 28 H 0.366 0.634 29 H 0.022 0.978 30 H 0.027 0.973 31 H 0.056 0.944 32 H 0.061 0.939 33 H 0.066 0.934 34 H 0.066 0.934 35 H 0.413 0.587 36 H 0.208 0.792 37 H 0.150 0.850 38 H 0.088 0.912 39 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 31.188 -5.505 8.899 32.897 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.636 5.636 2 C -0.259 4.259 3 Si 0.783 3.217 4 H -0.207 1.207 5 H -0.223 1.223 6 H -0.172 1.172 7 C -0.364 4.364 8 H 0.073 0.927 9 N -0.402 5.402 10 C 0.034 3.966 11 C -0.112 4.112 12 H 0.103 0.897 13 C -0.153 4.153 14 C -0.164 4.164 15 C 0.043 3.957 16 H 0.102 0.898 17 N -0.354 5.354 18 C 0.364 3.636 19 O -0.460 6.460 20 C -0.189 4.189 21 C -0.332 4.332 22 S 0.565 5.435 23 C -0.331 4.331 24 Cl 0.018 6.982 25 C -0.114 4.114 26 C -0.148 4.148 27 H 0.066 0.934 28 H 0.199 0.801 29 H 0.040 0.960 30 H 0.045 0.955 31 H 0.075 0.925 32 H 0.080 0.920 33 H 0.084 0.916 34 H 0.085 0.915 35 H 0.250 0.750 36 H 0.225 0.775 37 H 0.168 0.832 38 H 0.106 0.894 39 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 31.635 -5.434 9.644 33.516 hybrid contribution -0.420 0.717 -1.545 1.755 sum 31.215 -4.717 8.098 32.591 Atomic orbital electron populations 1.69891 1.07198 1.26643 1.59900 1.25545 0.96155 1.01390 1.02846 0.85395 0.78780 0.79488 0.78041 1.20673 1.22347 1.17197 1.19057 0.82971 0.93368 1.40976 0.92708 1.42702 1.02288 1.04377 1.90879 1.20809 0.90471 0.87166 0.98134 1.22288 0.93132 0.97483 0.98259 0.89722 1.22348 0.95090 1.00260 0.97642 1.22512 0.95951 0.97540 1.00375 1.21535 0.88540 0.97164 0.88443 0.89841 1.45904 1.04652 1.68912 1.15954 1.17779 0.82595 0.76439 0.86770 1.90786 1.79602 1.49313 1.26309 1.19840 0.92988 1.11350 0.94754 1.26235 1.07374 1.02546 0.97042 1.83153 0.89942 1.61705 1.08705 1.25291 0.91195 1.15553 1.01109 1.98384 1.04822 1.97313 1.97660 1.21128 0.91734 0.99628 0.98906 1.22606 0.92537 0.96812 1.02883 0.93411 0.80080 0.95967 0.95541 0.92533 0.91971 0.91551 0.91493 0.74956 0.77472 0.83215 0.89378 0.88703 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.99 -63.14 13.97 21.65 0.30 -62.84 16 2 C -0.07 -4.00 5.50 84.86 0.47 -3.53 16 3 Si 0.96 44.85 27.73 68.60 1.90 46.75 16 4 H -0.28 -12.93 7.11 99.48 0.71 -12.22 16 5 H -0.30 -14.13 7.11 99.48 0.71 -13.42 16 6 H -0.25 -10.25 6.52 99.48 0.65 -9.60 16 7 C -0.23 -13.15 10.47 84.03 0.88 -12.27 16 8 H 0.05 3.41 8.06 -2.91 -0.02 3.39 16 9 N -0.76 -34.06 5.25 -343.45 -1.80 -35.86 16 10 C 0.16 5.59 5.71 86.38 0.49 6.08 16 11 C -0.09 -2.28 2.96 -9.46 -0.03 -2.31 16 12 H 0.08 1.95 8.14 -2.39 -0.02 1.93 16 13 C -0.12 -2.93 5.96 31.67 0.19 -2.74 16 14 C -0.13 -2.73 6.59 31.32 0.21 -2.53 16 15 C 0.15 2.86 3.23 45.71 0.15 3.01 16 16 H 0.08 1.84 7.59 -2.38 -0.02 1.82 16 17 N -0.70 -11.58 4.91 -442.58 -2.17 -13.75 16 18 C 0.58 12.28 7.78 86.59 0.67 12.96 16 19 O -0.58 -17.21 16.46 -4.15 -0.07 -17.28 16 20 C -0.17 -2.82 5.98 -19.87 -0.12 -2.94 16 21 C -0.19 -1.86 10.38 67.29 0.70 -1.16 16 22 S 0.30 2.60 23.02 -56.49 -1.30 1.30 16 23 C -0.19 -2.65 7.01 66.64 0.47 -2.18 16 24 Cl -0.01 -0.14 29.27 -2.72 -0.08 -0.22 16 25 C -0.08 -1.44 10.04 22.68 0.23 -1.22 16 26 C -0.11 -2.01 5.89 31.71 0.19 -1.83 16 27 H 0.26 15.69 8.31 -92.71 -0.77 14.91 16 28 H 0.37 15.61 5.39 -92.71 -0.50 15.11 16 29 H 0.02 0.81 8.10 -2.39 -0.02 0.79 16 30 H 0.03 0.93 8.14 -2.39 -0.02 0.92 16 31 H 0.06 1.54 8.14 -2.39 -0.02 1.52 16 32 H 0.06 1.71 8.02 -2.39 -0.02 1.69 16 33 H 0.07 1.46 7.92 -2.39 -0.02 1.44 16 34 H 0.07 1.51 8.14 -2.38 -0.02 1.49 16 35 H 0.41 4.32 7.06 -92.71 -0.65 3.67 16 36 H 0.21 0.67 7.01 -2.91 -0.02 0.65 16 37 H 0.15 2.86 8.06 -2.91 -0.02 2.84 16 38 H 0.09 1.63 8.05 -2.39 -0.02 1.61 16 39 H 0.09 1.36 7.98 -2.39 -0.02 1.34 16 Total: -1.00 -73.84 352.97 1.15 -72.69 By element: Atomic # 1 Polarization: 19.99 SS G_CDS: -0.12 Total: 19.87 kcal Atomic # 6 Polarization: -15.16 SS G_CDS: 4.49 Total: -10.67 kcal Atomic # 7 Polarization: -108.77 SS G_CDS: -3.67 Total: -112.44 kcal Atomic # 8 Polarization: -17.21 SS G_CDS: -0.07 Total: -17.28 kcal Atomic # 14 Polarization: 44.85 SS G_CDS: 1.90 Total: 46.75 kcal Atomic # 16 Polarization: 2.60 SS G_CDS: -1.30 Total: 1.30 kcal Atomic # 17 Polarization: -0.14 SS G_CDS: -0.08 Total: -0.22 kcal Total: -73.84 1.15 -72.69 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755742549.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.560 kcal (2) G-P(sol) polarization free energy of solvation -73.836 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.276 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.150 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.686 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.126 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds