Wall clock time and date at job start Tue Mar 31 2020 15:43:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86807 * 120.00149 * 2 1 4 4 H 1.48495 * 109.46983 * 239.99581 * 3 2 1 5 5 H 1.48500 * 109.46952 * 359.97438 * 3 2 1 6 6 H 1.48493 * 109.47160 * 119.99400 * 3 2 1 7 7 C 1.38812 * 119.99983 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99993 * 180.02562 * 7 2 1 9 9 N 1.36939 * 120.00028 * 0.02562 * 7 2 1 10 10 C 1.46499 * 119.99581 * 179.97438 * 9 7 2 11 11 C 1.53005 * 109.46823 * 179.97438 * 10 9 7 12 12 H 1.09003 * 110.01500 * 306.39440 * 11 10 9 13 13 C 1.54274 * 110.07300 * 67.80648 * 11 10 9 14 14 C 1.54889 * 104.19620 * 142.91890 * 13 11 10 15 15 C 1.54890 * 102.74582 * 322.05850 * 14 13 11 16 16 H 1.09002 * 110.60282 * 279.20639 * 15 14 13 17 17 N 1.46506 * 110.48693 * 156.62250 * 15 14 13 18 18 C 1.34773 * 119.99968 * 90.21986 * 17 15 14 19 19 O 1.21638 * 119.99901 * 359.73137 * 18 17 15 20 20 C 1.47186 * 119.99999 * 180.02562 * 18 17 15 21 21 C 1.35967 * 123.45227 * 359.74811 * 20 18 17 22 22 S 1.70445 * 110.84425 * 180.02562 * 21 20 18 23 23 C 1.75502 * 92.45491 * 0.02562 * 22 21 20 24 24 Cl 1.73602 * 124.72119 * 180.02562 * 23 22 21 25 25 C 1.32891 * 110.55979 * 359.71978 * 23 22 21 26 26 C 1.53870 * 110.03502 * 184.99813 * 11 10 9 27 27 H 0.97003 * 119.99968 * 0.02562 * 1 2 3 28 28 H 0.96994 * 119.99957 * 359.97438 * 9 7 2 29 29 H 1.08996 * 109.47679 * 59.99820 * 10 9 7 30 30 H 1.08999 * 109.47295 * 299.99454 * 10 9 7 31 31 H 1.08997 * 110.48487 * 261.60124 * 13 11 10 32 32 H 1.09002 * 110.48090 * 24.23740 * 13 11 10 33 33 H 1.08996 * 110.75512 * 203.74659 * 14 13 11 34 34 H 1.08996 * 110.75467 * 80.36743 * 14 13 11 35 35 H 0.96998 * 119.99507 * 270.22841 * 17 15 14 36 36 H 1.08005 * 124.58153 * 0.02562 * 21 20 18 37 37 H 1.08009 * 123.47351 * 180.26779 * 25 23 22 38 38 H 1.09000 * 110.03296 * 121.37989 * 26 11 10 39 39 H 1.08997 * 110.03165 * 359.94982 * 26 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1040 1.6963 -1.2124 5 1 1.2852 2.7465 -0.0006 6 1 3.1038 1.6965 1.2125 7 6 2.0102 -1.2022 0.0005 8 1 3.0903 -1.2022 0.0010 9 7 1.3255 -2.3881 0.0005 10 6 2.0581 -3.6567 0.0005 11 6 1.0639 -4.8197 0.0012 12 1 0.3598 -4.7082 0.8259 13 6 0.3032 -4.8668 -1.3402 14 6 0.1400 -6.3793 -1.6314 15 6 1.4862 -6.9687 -1.1420 16 1 2.2618 -6.8309 -1.8955 17 7 1.3359 -8.3893 -0.8167 18 6 1.5476 -9.3237 -1.7646 19 8 1.8586 -8.9874 -2.8914 20 6 1.3960 -10.7508 -1.4379 21 6 1.0505 -11.2046 -0.2036 22 16 0.9680 -12.9070 -0.1845 23 6 1.4095 -13.0227 -1.8791 24 17 1.5730 -14.5103 -2.7589 25 6 1.5947 -11.8129 -2.3968 26 6 1.8160 -6.1562 0.1271 27 1 -0.4850 0.8401 -0.0004 28 1 0.3556 -2.3881 0.0005 29 1 2.6848 -3.7145 0.8904 30 1 2.6847 -3.7145 -0.8895 31 1 -0.6719 -4.3897 -1.2427 32 1 0.8866 -4.3876 -2.1264 33 1 0.0068 -6.5549 -2.6989 34 1 -0.6925 -6.7944 -1.0635 35 1 1.0840 -8.6572 0.0809 36 1 0.8548 -10.5719 0.6495 37 1 1.8687 -11.6414 -3.4274 38 1 1.4771 -6.6933 1.0130 39 1 2.8893 -5.9763 0.1869 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001755742550.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:43:43 Heat of formation + Delta-G solvation = -11.784775 kcal Electronic energy + Delta-G solvation = -22122.771172 eV Core-core repulsion = 18603.486780 eV Total energy + Delta-G solvation = -3519.284392 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 328.075 amu Computer time = 1.74 seconds Orbital eigenvalues (eV) -40.32915 -38.43226 -37.58727 -36.67635 -34.88504 -33.49530 -31.18453 -30.09757 -28.80060 -27.65634 -25.42703 -24.29959 -22.16456 -22.10831 -20.61096 -19.85445 -19.46506 -18.67513 -17.51048 -16.99829 -16.33494 -15.44430 -15.23121 -14.93693 -14.54103 -14.24038 -14.10874 -14.00737 -13.65378 -13.31037 -13.24315 -13.14056 -12.76194 -12.20173 -12.09702 -12.08007 -11.71706 -11.44571 -11.27300 -11.06248 -10.83254 -10.70952 -10.63992 -10.34172 -10.17324 -10.14772 -9.91524 -9.65149 -9.41840 -9.21688 -8.95260 -8.83756 -6.88779 -5.74099 -3.02225 0.11843 0.50150 1.19887 1.39948 1.64984 2.96413 3.04559 3.45753 3.49969 3.51053 4.25459 4.51357 4.59970 4.70425 4.74860 4.81397 5.02832 5.11137 5.26586 5.49705 5.54606 5.57036 5.59347 5.61996 5.67687 5.85971 5.90621 6.09795 6.15323 6.27644 6.29763 6.46054 6.55566 6.65391 6.82138 6.95095 7.28019 7.71823 7.99044 8.45239 9.56241 10.15152 10.49868 11.48810 Molecular weight = 328.08amu Principal moments of inertia in cm(-1) A = 0.044928 B = 0.001796 C = 0.001776 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 623.072229 B =15583.749251 C =15765.576485 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.015 4.015 3 Si 0.907 3.093 4 H -0.286 1.286 5 H -0.291 1.291 6 H -0.287 1.287 7 C -0.239 4.239 8 H 0.069 0.931 9 N -0.732 5.732 10 C 0.159 3.841 11 C -0.096 4.096 12 H 0.074 0.926 13 C -0.111 4.111 14 C -0.133 4.133 15 C 0.139 3.861 16 H 0.098 0.902 17 N -0.715 5.715 18 C 0.576 3.424 19 O -0.530 6.530 20 C -0.142 4.142 21 C -0.209 4.209 22 S 0.239 5.761 23 C -0.174 4.174 24 Cl -0.009 7.009 25 C -0.068 4.068 26 C -0.121 4.121 27 H 0.255 0.745 28 H 0.384 0.616 29 H 0.016 0.984 30 H 0.020 0.980 31 H 0.070 0.930 32 H 0.073 0.927 33 H 0.068 0.932 34 H 0.066 0.934 35 H 0.397 0.603 36 H 0.179 0.821 37 H 0.164 0.836 38 H 0.065 0.935 39 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.426 -31.364 0.522 31.371 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.583 5.583 2 C -0.211 4.211 3 Si 0.738 3.262 4 H -0.213 1.213 5 H -0.217 1.217 6 H -0.213 1.213 7 C -0.370 4.370 8 H 0.087 0.913 9 N -0.376 5.376 10 C 0.031 3.969 11 C -0.115 4.115 12 H 0.092 0.908 13 C -0.149 4.149 14 C -0.172 4.172 15 C 0.035 3.965 16 H 0.116 0.884 17 N -0.365 5.365 18 C 0.361 3.639 19 O -0.408 6.408 20 C -0.160 4.160 21 C -0.348 4.348 22 S 0.503 5.497 23 C -0.317 4.317 24 Cl 0.019 6.981 25 C -0.098 4.098 26 C -0.159 4.159 27 H 0.065 0.935 28 H 0.217 0.783 29 H 0.034 0.966 30 H 0.038 0.962 31 H 0.088 0.912 32 H 0.092 0.908 33 H 0.086 0.914 34 H 0.084 0.916 35 H 0.231 0.769 36 H 0.196 0.804 37 H 0.181 0.819 38 H 0.084 0.916 39 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 0.468 -32.188 0.738 32.200 hybrid contribution 0.357 1.811 -0.641 1.954 sum 0.825 -30.377 0.096 30.388 Atomic orbital electron populations 1.69647 1.05086 1.25693 1.57882 1.24734 0.95528 0.97660 1.03150 0.86267 0.78511 0.83584 0.77827 1.21291 1.21713 1.21332 1.19198 0.91000 0.84271 1.42547 0.91306 1.42341 1.05866 0.99947 1.89432 1.20796 0.93046 0.85381 0.97653 1.21885 0.97703 0.93717 0.98187 0.90755 1.22323 1.01059 0.94132 0.97361 1.22896 0.96464 0.96588 1.01248 1.22022 0.98696 0.77655 0.98079 0.88403 1.45975 1.70410 1.06721 1.13404 1.17475 0.77226 0.84214 0.85012 1.90827 1.47185 1.82069 1.20704 1.20101 1.08300 0.94693 0.92894 1.25820 1.05795 1.01451 1.01742 1.83221 1.64542 0.98696 1.03200 1.25112 1.15752 0.92094 0.98745 1.98387 1.96457 1.29437 1.73808 1.21181 0.98670 0.88521 1.01472 1.22409 1.01535 0.95882 0.96119 0.93519 0.78262 0.96577 0.96225 0.91168 0.90797 0.91368 0.91555 0.76851 0.80375 0.81857 0.91616 0.90710 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 37. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.35 13.06 55.49 0.72 -27.63 16 2 C -0.01 -0.43 5.50 -17.43 -0.10 -0.53 16 3 Si 0.91 22.58 29.55 -169.99 -5.02 17.55 16 4 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 5 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 6 H -0.29 -7.01 7.11 56.52 0.40 -6.60 16 7 C -0.24 -6.74 9.99 -15.06 -0.15 -6.89 16 8 H 0.07 1.89 7.83 -52.48 -0.41 1.47 16 9 N -0.73 -18.49 5.45 -59.91 -0.33 -18.81 16 10 C 0.16 3.15 5.32 -4.04 -0.02 3.12 16 11 C -0.10 -1.47 2.96 -89.50 -0.26 -1.73 16 12 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 13 C -0.11 -1.68 6.09 -25.07 -0.15 -1.84 16 14 C -0.13 -1.69 6.58 -24.74 -0.16 -1.86 16 15 C 0.14 1.66 3.22 -66.27 -0.21 1.45 16 16 H 0.10 1.35 7.56 -51.93 -0.39 0.96 16 17 N -0.71 -6.96 5.13 -53.34 -0.27 -7.24 16 18 C 0.58 6.71 7.79 -12.63 -0.10 6.61 16 19 O -0.53 -8.29 16.45 5.24 0.09 -8.20 16 20 C -0.14 -1.28 5.98 -104.63 -0.63 -1.91 16 21 C -0.21 -1.27 10.38 29.92 0.31 -0.96 16 22 S 0.24 1.31 23.02 -107.50 -2.47 -1.16 16 23 C -0.17 -1.33 7.01 28.89 0.20 -1.13 16 24 Cl -0.01 -0.07 29.27 -51.86 -1.52 -1.59 16 25 C -0.07 -0.61 10.04 -38.98 -0.39 -1.00 16 26 C -0.12 -1.42 6.19 -25.62 -0.16 -1.58 16 27 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 28 H 0.38 10.14 7.55 -40.82 -0.31 9.83 16 29 H 0.02 0.33 8.14 -51.93 -0.42 -0.10 16 30 H 0.02 0.40 8.01 -51.93 -0.42 -0.01 16 31 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 32 H 0.07 1.25 7.76 -51.93 -0.40 0.85 16 33 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 34 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 35 H 0.40 2.64 6.86 -40.82 -0.28 2.36 16 36 H 0.18 0.58 7.01 -52.48 -0.37 0.22 16 37 H 0.16 1.52 8.06 -52.48 -0.42 1.09 16 38 H 0.07 0.63 7.73 -51.93 -0.40 0.23 16 39 H 0.07 0.89 7.67 -51.93 -0.40 0.49 16 LS Contribution 355.33 15.07 5.35 5.35 Total: -1.00 -32.90 355.33 -10.32 -43.23 By element: Atomic # 1 Polarization: 11.79 SS G_CDS: -5.05 Total: 6.74 kcal Atomic # 6 Polarization: -6.42 SS G_CDS: -1.82 Total: -8.24 kcal Atomic # 7 Polarization: -53.80 SS G_CDS: 0.12 Total: -53.68 kcal Atomic # 8 Polarization: -8.29 SS G_CDS: 0.09 Total: -8.20 kcal Atomic # 14 Polarization: 22.58 SS G_CDS: -5.02 Total: 17.55 kcal Atomic # 16 Polarization: 1.31 SS G_CDS: -2.47 Total: -1.16 kcal Atomic # 17 Polarization: -0.07 SS G_CDS: -1.52 Total: -1.59 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -32.90 -10.32 -43.23 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755742550.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.441 kcal (2) G-P(sol) polarization free energy of solvation -32.903 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.462 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.323 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.226 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.785 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.74 seconds