Wall clock time and date at job start Tue Mar 31 2020 15:46:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31612 * 1 3 3 Si 1.86799 * 120.00435 * 2 1 4 4 H 1.48500 * 109.47178 * 270.00282 * 3 2 1 5 5 H 1.48503 * 109.46668 * 30.00087 * 3 2 1 6 6 H 1.48494 * 109.47286 * 149.99710 * 3 2 1 7 7 C 1.38814 * 119.99982 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00372 * 180.02562 * 7 2 1 9 9 N 1.36941 * 119.99834 * 0.02562 * 7 2 1 10 10 C 1.46501 * 119.99927 * 179.97438 * 9 7 2 11 11 C 1.53004 * 109.47140 * 179.97438 * 10 9 7 12 12 H 1.08995 * 110.43202 * 303.92088 * 11 10 9 13 13 C 1.54268 * 110.47974 * 66.45922 * 11 10 9 14 14 C 1.53878 * 106.59451 * 142.28925 * 13 11 10 15 15 C 1.54263 * 106.59963 * 359.97438 * 14 13 11 16 16 H 1.08998 * 110.49183 * 95.20286 * 15 14 13 17 17 N 1.46501 * 110.48367 * 217.71298 * 15 14 13 18 18 C 1.34780 * 119.99965 * 273.54122 * 17 15 14 19 19 O 1.21700 * 119.99776 * 0.02562 * 18 17 15 20 20 C 1.46573 * 120.00089 * 180.02562 * 18 17 15 21 21 C 1.36672 * 125.45273 * 180.02562 * 20 18 17 22 22 C 1.37534 * 113.28759 * 180.02562 * 21 20 18 23 23 Cl 1.73595 * 122.45872 * 179.97438 * 22 21 20 24 24 C 1.33879 * 115.07597 * 0.02562 * 22 21 20 25 25 S 1.70612 * 110.96211 * 359.97438 * 24 22 21 26 26 C 1.54883 * 110.48657 * 181.23432 * 11 10 9 27 27 H 0.96997 * 120.00000 * 0.02562 * 1 2 3 28 28 H 0.96996 * 119.99690 * 0.02562 * 9 7 2 29 29 H 1.09005 * 109.46998 * 60.00580 * 10 9 7 30 30 H 1.09000 * 109.47584 * 300.00624 * 10 9 7 31 31 H 1.08996 * 110.03726 * 23.00121 * 13 11 10 32 32 H 1.09006 * 110.03078 * 261.56870 * 13 11 10 33 33 H 1.08993 * 110.03023 * 240.71083 * 14 13 11 34 34 H 1.09004 * 110.07474 * 119.30227 * 14 13 11 35 35 H 0.97004 * 120.00340 * 93.54761 * 17 15 14 36 36 H 1.08001 * 123.35643 * 359.97438 * 21 20 18 37 37 H 1.07999 * 124.51234 * 180.02562 * 24 22 21 38 38 H 1.08992 * 110.75992 * 85.06491 * 26 11 10 39 39 H 1.09003 * 110.75295 * 321.69248 * 26 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4477 2.6526 0.7001 6 1 3.5477 1.4401 0.7001 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2022 0.0010 9 7 1.3254 -2.3881 0.0005 10 6 2.0579 -3.6568 0.0005 11 6 1.0636 -4.8198 0.0012 12 1 0.3835 -4.7384 0.8490 13 6 0.2737 -4.8552 -1.3234 14 6 0.0909 -6.3393 -1.6865 15 6 0.7767 -7.1538 -0.5703 16 1 0.0499 -7.4540 0.1846 17 7 1.4466 -8.3297 -1.1314 18 6 0.7591 -9.4748 -1.3120 19 8 -0.4183 -9.5318 -1.0094 20 6 1.4295 -10.6514 -1.8728 21 6 0.8422 -11.8639 -2.1029 22 6 1.7046 -12.7933 -2.6359 23 17 1.2084 -14.4118 -3.0205 24 6 2.9550 -12.3585 -2.8353 25 16 3.1183 -10.7292 -2.3562 26 6 1.8139 -6.1744 0.0324 27 1 -0.4850 0.8400 -0.0004 28 1 0.3555 -2.3880 -0.0002 29 1 2.6845 -3.7146 0.8906 30 1 2.6847 -3.7146 -0.8894 31 1 0.8347 -4.3455 -2.1066 32 1 -0.6987 -4.3807 -1.1910 33 1 0.5633 -6.5499 -2.6459 34 1 -0.9700 -6.5857 -1.7309 35 1 2.3850 -8.2841 -1.3728 36 1 -0.1953 -12.0717 -1.8870 37 1 3.7535 -12.9588 -3.2455 38 1 2.0615 -6.4554 1.0560 39 1 2.7107 -6.1336 -0.5858 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001755743270.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:46:23 Heat of formation + Delta-G solvation = -11.980220 kcal Electronic energy + Delta-G solvation = -22100.890779 eV Core-core repulsion = 18581.597912 eV Total energy + Delta-G solvation = -3519.292867 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 328.075 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.25793 -38.71313 -37.87830 -36.42973 -34.90989 -33.52950 -31.24651 -30.32365 -28.80084 -27.81876 -25.52857 -24.29016 -22.19982 -22.07192 -20.75066 -19.80119 -19.41734 -18.90117 -17.08563 -16.82506 -16.41617 -15.88321 -15.62247 -15.16415 -14.60745 -14.28823 -14.04674 -13.72279 -13.56548 -13.36124 -13.22915 -13.21651 -12.85372 -12.08499 -11.91518 -11.86862 -11.81885 -11.59987 -11.36080 -11.08576 -10.85752 -10.77530 -10.49943 -10.38672 -10.34615 -10.11522 -9.93343 -9.67099 -9.53571 -9.23979 -9.00154 -8.85839 -6.90079 -5.75241 -3.03597 -0.11554 0.69032 1.02333 1.65064 2.00153 2.81956 2.84092 3.43884 3.48851 3.50752 4.24020 4.46552 4.57912 4.64237 4.69699 4.76883 5.00978 5.08670 5.35461 5.44418 5.52560 5.54689 5.56533 5.63119 5.67060 5.81612 5.87683 6.04499 6.12865 6.26745 6.32497 6.36471 6.56806 6.62629 6.80766 6.93463 7.16307 7.70598 7.85284 8.43918 9.54988 10.13991 10.48541 11.47674 Molecular weight = 328.08amu Principal moments of inertia in cm(-1) A = 0.040056 B = 0.001878 C = 0.001826 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 698.850352 B =14908.002079 C =15329.771046 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C -0.015 4.015 3 Si 0.907 3.093 4 H -0.290 1.290 5 H -0.292 1.292 6 H -0.282 1.282 7 C -0.239 4.239 8 H 0.069 0.931 9 N -0.732 5.732 10 C 0.161 3.839 11 C -0.095 4.095 12 H 0.078 0.922 13 C -0.112 4.112 14 C -0.133 4.133 15 C 0.140 3.860 16 H 0.097 0.903 17 N -0.716 5.716 18 C 0.589 3.411 19 O -0.522 6.522 20 C -0.254 4.254 21 C -0.053 4.053 22 C -0.060 4.060 23 Cl -0.045 7.045 24 C -0.232 4.232 25 S 0.253 5.747 26 C -0.121 4.121 27 H 0.255 0.745 28 H 0.384 0.616 29 H 0.017 0.983 30 H 0.019 0.981 31 H 0.071 0.929 32 H 0.067 0.933 33 H 0.063 0.937 34 H 0.067 0.933 35 H 0.397 0.603 36 H 0.164 0.836 37 H 0.180 0.820 38 H 0.073 0.927 39 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.630 -28.718 -5.997 30.077 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.211 4.211 3 Si 0.738 3.262 4 H -0.218 1.218 5 H -0.218 1.218 6 H -0.208 1.208 7 C -0.370 4.370 8 H 0.087 0.913 9 N -0.376 5.376 10 C 0.034 3.966 11 C -0.114 4.114 12 H 0.096 0.904 13 C -0.150 4.150 14 C -0.172 4.172 15 C 0.037 3.963 16 H 0.115 0.885 17 N -0.366 5.366 18 C 0.375 3.625 19 O -0.399 6.399 20 C -0.375 4.375 21 C -0.086 4.086 22 C -0.100 4.100 23 Cl -0.017 7.017 24 C -0.371 4.371 25 S 0.520 5.480 26 C -0.160 4.160 27 H 0.065 0.935 28 H 0.218 0.782 29 H 0.035 0.965 30 H 0.036 0.964 31 H 0.090 0.910 32 H 0.086 0.914 33 H 0.082 0.918 34 H 0.086 0.914 35 H 0.231 0.769 36 H 0.182 0.818 37 H 0.198 0.802 38 H 0.091 0.909 39 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 7.080 -27.727 -5.793 29.198 hybrid contribution -0.527 -0.387 -0.319 0.727 sum 6.553 -28.114 -6.112 29.508 Atomic orbital electron populations 1.69656 1.05091 1.25611 1.57815 1.24742 0.95528 0.97683 1.03138 0.86193 0.78631 0.83903 0.77476 1.21775 1.21791 1.20810 1.19231 0.91001 0.84243 1.42565 0.91259 1.42348 1.05919 0.99917 1.89416 1.20671 0.92999 0.85319 0.97631 1.22095 0.97557 0.93542 0.98204 0.90384 1.22105 1.01058 0.94236 0.97610 1.22567 1.00925 0.95695 0.98036 1.22026 0.95156 0.83341 0.95799 0.88538 1.45989 1.13942 1.11610 1.65062 1.16831 0.86168 0.81456 0.78091 1.90864 1.14929 1.83591 1.50528 1.24631 0.99025 0.99516 1.14350 1.20533 1.01655 0.89856 0.96547 1.19560 0.93766 0.89363 1.07319 1.98383 1.91430 1.18971 1.92896 1.25275 1.00969 1.02102 1.08764 1.83183 1.05687 1.04219 1.54958 1.22750 0.97672 0.94558 1.00999 0.93536 0.78206 0.96483 0.96367 0.91033 0.91376 0.91782 0.91442 0.76894 0.81819 0.80213 0.90864 0.90753 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.24 13.06 55.49 0.72 -27.51 16 2 C -0.01 -0.43 5.50 -17.43 -0.10 -0.53 16 3 Si 0.91 22.38 29.55 -169.99 -5.02 17.36 16 4 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 5 H -0.29 -7.26 7.11 56.52 0.40 -6.85 16 6 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 7 C -0.24 -6.67 9.99 -15.06 -0.15 -6.82 16 8 H 0.07 1.87 7.83 -52.48 -0.41 1.46 16 9 N -0.73 -18.31 5.44 -59.90 -0.33 -18.63 16 10 C 0.16 3.13 5.57 -4.04 -0.02 3.10 16 11 C -0.09 -1.45 2.93 -88.96 -0.26 -1.71 16 12 H 0.08 1.25 8.14 -51.93 -0.42 0.83 16 13 C -0.11 -1.69 6.05 -25.61 -0.15 -1.84 16 14 C -0.13 -1.71 6.53 -25.61 -0.17 -1.87 16 15 C 0.14 1.63 3.16 -66.28 -0.21 1.43 16 16 H 0.10 1.24 7.66 -51.93 -0.40 0.85 16 17 N -0.72 -7.12 5.11 -53.55 -0.27 -7.40 16 18 C 0.59 6.82 7.78 -12.90 -0.10 6.72 16 19 O -0.52 -7.94 16.55 5.19 0.09 -7.85 16 20 C -0.25 -2.32 6.45 -36.79 -0.24 -2.55 16 21 C -0.05 -0.47 9.89 -40.40 -0.40 -0.87 16 22 C -0.06 -0.46 6.25 -41.37 -0.26 -0.72 16 23 Cl -0.05 -0.34 29.10 -51.86 -1.51 -1.85 16 24 C -0.23 -1.40 10.78 29.20 0.31 -1.08 16 25 S 0.25 1.47 22.15 -107.50 -2.38 -0.91 16 26 C -0.12 -1.40 5.92 -24.75 -0.15 -1.55 16 27 H 0.25 7.46 8.31 -40.82 -0.34 7.12 16 28 H 0.38 10.12 7.52 -40.82 -0.31 9.81 16 29 H 0.02 0.34 8.14 -51.93 -0.42 -0.08 16 30 H 0.02 0.36 8.05 -51.93 -0.42 -0.06 16 31 H 0.07 1.17 7.77 -51.93 -0.40 0.77 16 32 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 33 H 0.06 0.78 8.04 -51.93 -0.42 0.36 16 34 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 35 H 0.40 2.96 7.64 -40.82 -0.31 2.65 16 36 H 0.16 1.49 8.06 -52.49 -0.42 1.06 16 37 H 0.18 0.68 8.06 -52.49 -0.42 0.26 16 38 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 39 H 0.07 0.78 7.94 -51.93 -0.41 0.36 16 LS Contribution 356.67 15.07 5.37 5.37 Total: -1.00 -32.38 356.67 -10.39 -42.77 By element: Atomic # 1 Polarization: 12.13 SS G_CDS: -5.17 Total: 6.96 kcal Atomic # 6 Polarization: -6.41 SS G_CDS: -1.89 Total: -8.30 kcal Atomic # 7 Polarization: -53.67 SS G_CDS: 0.12 Total: -53.54 kcal Atomic # 8 Polarization: -7.94 SS G_CDS: 0.09 Total: -7.85 kcal Atomic # 14 Polarization: 22.38 SS G_CDS: -5.02 Total: 17.36 kcal Atomic # 16 Polarization: 1.47 SS G_CDS: -2.38 Total: -0.91 kcal Atomic # 17 Polarization: -0.34 SS G_CDS: -1.51 Total: -1.85 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -32.38 -10.39 -42.77 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755743270.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.791 kcal (2) G-P(sol) polarization free energy of solvation -32.380 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.589 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.391 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.771 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.980 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds