Wall clock time and date at job start Tue Mar 31 2020 15:46:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31612 * 1 3 3 Si 1.86799 * 120.00435 * 2 1 4 4 H 1.48500 * 109.47178 * 270.00282 * 3 2 1 5 5 H 1.48503 * 109.46668 * 30.00087 * 3 2 1 6 6 H 1.48494 * 109.47286 * 149.99710 * 3 2 1 7 7 C 1.38814 * 119.99982 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00372 * 180.02562 * 7 2 1 9 9 N 1.36941 * 119.99834 * 0.02562 * 7 2 1 10 10 C 1.46501 * 119.99927 * 179.97438 * 9 7 2 11 11 C 1.53004 * 109.47140 * 179.97438 * 10 9 7 12 12 H 1.08995 * 110.43202 * 303.92088 * 11 10 9 13 13 C 1.54268 * 110.47974 * 66.45922 * 11 10 9 14 14 C 1.53878 * 106.59451 * 142.28925 * 13 11 10 15 15 C 1.54263 * 106.59963 * 359.97438 * 14 13 11 16 16 H 1.08998 * 110.49183 * 95.20286 * 15 14 13 17 17 N 1.46501 * 110.48367 * 217.71298 * 15 14 13 18 18 C 1.34780 * 119.99965 * 273.54122 * 17 15 14 19 19 O 1.21700 * 119.99776 * 0.02562 * 18 17 15 20 20 C 1.46573 * 120.00089 * 180.02562 * 18 17 15 21 21 C 1.36672 * 125.45273 * 180.02562 * 20 18 17 22 22 C 1.37534 * 113.28759 * 180.02562 * 21 20 18 23 23 Cl 1.73595 * 122.45872 * 179.97438 * 22 21 20 24 24 C 1.33879 * 115.07597 * 0.02562 * 22 21 20 25 25 S 1.70612 * 110.96211 * 359.97438 * 24 22 21 26 26 C 1.54883 * 110.48657 * 181.23432 * 11 10 9 27 27 H 0.96997 * 120.00000 * 0.02562 * 1 2 3 28 28 H 0.96996 * 119.99690 * 0.02562 * 9 7 2 29 29 H 1.09005 * 109.46998 * 60.00580 * 10 9 7 30 30 H 1.09000 * 109.47584 * 300.00624 * 10 9 7 31 31 H 1.08996 * 110.03726 * 23.00121 * 13 11 10 32 32 H 1.09006 * 110.03078 * 261.56870 * 13 11 10 33 33 H 1.08993 * 110.03023 * 240.71083 * 14 13 11 34 34 H 1.09004 * 110.07474 * 119.30227 * 14 13 11 35 35 H 0.97004 * 120.00340 * 93.54761 * 17 15 14 36 36 H 1.08001 * 123.35643 * 359.97438 * 21 20 18 37 37 H 1.07999 * 124.51234 * 180.02562 * 24 22 21 38 38 H 1.08992 * 110.75992 * 85.06491 * 26 11 10 39 39 H 1.09003 * 110.75295 * 321.69248 * 26 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4477 2.6526 0.7001 6 1 3.5477 1.4401 0.7001 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2022 0.0010 9 7 1.3254 -2.3881 0.0005 10 6 2.0579 -3.6568 0.0005 11 6 1.0636 -4.8198 0.0012 12 1 0.3835 -4.7384 0.8490 13 6 0.2737 -4.8552 -1.3234 14 6 0.0909 -6.3393 -1.6865 15 6 0.7767 -7.1538 -0.5703 16 1 0.0499 -7.4540 0.1846 17 7 1.4466 -8.3297 -1.1314 18 6 0.7591 -9.4748 -1.3120 19 8 -0.4183 -9.5318 -1.0094 20 6 1.4295 -10.6514 -1.8728 21 6 0.8422 -11.8639 -2.1029 22 6 1.7046 -12.7933 -2.6359 23 17 1.2084 -14.4118 -3.0205 24 6 2.9550 -12.3585 -2.8353 25 16 3.1183 -10.7292 -2.3562 26 6 1.8139 -6.1744 0.0324 27 1 -0.4850 0.8400 -0.0004 28 1 0.3555 -2.3880 -0.0002 29 1 2.6845 -3.7146 0.8906 30 1 2.6847 -3.7146 -0.8894 31 1 0.8347 -4.3455 -2.1066 32 1 -0.6987 -4.3807 -1.1910 33 1 0.5633 -6.5499 -2.6459 34 1 -0.9700 -6.5857 -1.7309 35 1 2.3850 -8.2841 -1.3728 36 1 -0.1953 -12.0717 -1.8870 37 1 3.7535 -12.9588 -3.2455 38 1 2.0615 -6.4554 1.0560 39 1 2.7107 -6.1336 -0.5858 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001755743270.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:46:22 Heat of formation + Delta-G solvation = -32.377447 kcal Electronic energy + Delta-G solvation = -22101.775269 eV Core-core repulsion = 18581.597912 eV Total energy + Delta-G solvation = -3520.177358 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 328.075 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.16856 -39.54390 -38.79693 -37.02078 -36.45444 -34.91436 -32.99871 -31.12254 -30.11964 -28.97622 -26.54488 -25.71832 -23.92332 -22.87073 -21.77142 -20.59944 -20.47733 -19.71616 -19.05495 -17.59035 -17.29026 -16.80546 -16.63845 -16.46937 -16.03328 -15.45088 -15.10728 -14.96466 -14.71398 -14.52942 -14.26660 -14.25436 -13.89472 -13.38608 -13.27946 -12.91518 -12.77162 -12.59721 -12.44413 -12.40045 -12.16467 -12.06791 -11.91407 -11.78524 -11.70050 -11.50200 -11.32077 -11.27820 -10.89736 -10.30754 -10.00065 -9.50834 -8.95778 -7.92730 -5.20922 -0.72052 0.18379 0.44514 1.02253 1.45383 1.48502 1.50272 1.58696 1.99383 2.01035 2.58155 3.40800 3.49913 3.60422 3.69507 3.88184 3.93773 4.09929 4.19069 4.37736 4.47075 4.49421 4.54038 4.58732 4.66559 4.79885 4.82714 4.89475 4.92655 5.03131 5.11578 5.17303 5.23815 5.37297 5.48101 5.53109 5.57084 6.29815 6.36276 7.02631 7.35963 8.14410 8.36259 9.31002 Molecular weight = 328.08amu Principal moments of inertia in cm(-1) A = 0.040056 B = 0.001878 C = 0.001826 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 698.850352 B =14908.002079 C =15329.771046 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.971 5.971 2 C -0.079 4.079 3 Si 0.974 3.026 4 H -0.287 1.287 5 H -0.297 1.297 6 H -0.268 1.268 7 C -0.243 4.243 8 H 0.077 0.923 9 N -0.746 5.746 10 C 0.160 3.840 11 C -0.090 4.090 12 H 0.067 0.933 13 C -0.108 4.108 14 C -0.125 4.125 15 C 0.148 3.852 16 H 0.084 0.916 17 N -0.703 5.703 18 C 0.590 3.410 19 O -0.568 6.568 20 C -0.287 4.287 21 C -0.058 4.058 22 C -0.079 4.079 23 Cl -0.048 7.048 24 C -0.221 4.221 25 S 0.325 5.675 26 C -0.106 4.106 27 H 0.250 0.750 28 H 0.373 0.627 29 H 0.022 0.978 30 H 0.026 0.974 31 H 0.058 0.942 32 H 0.047 0.953 33 H 0.074 0.926 34 H 0.057 0.943 35 H 0.412 0.588 36 H 0.151 0.849 37 H 0.207 0.793 38 H 0.089 0.911 39 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.663 -29.903 -6.532 32.097 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.622 5.622 2 C -0.271 4.271 3 Si 0.803 3.197 4 H -0.215 1.215 5 H -0.224 1.224 6 H -0.193 1.193 7 C -0.375 4.375 8 H 0.095 0.905 9 N -0.389 5.389 10 C 0.034 3.966 11 C -0.109 4.109 12 H 0.086 0.914 13 C -0.146 4.146 14 C -0.163 4.163 15 C 0.044 3.956 16 H 0.102 0.898 17 N -0.354 5.354 18 C 0.377 3.623 19 O -0.449 6.449 20 C -0.408 4.408 21 C -0.092 4.092 22 C -0.119 4.119 23 Cl -0.020 7.020 24 C -0.360 4.360 25 S 0.592 5.408 26 C -0.144 4.144 27 H 0.059 0.941 28 H 0.205 0.795 29 H 0.040 0.960 30 H 0.043 0.957 31 H 0.077 0.923 32 H 0.066 0.934 33 H 0.093 0.907 34 H 0.076 0.924 35 H 0.249 0.751 36 H 0.169 0.831 37 H 0.224 0.776 38 H 0.108 0.892 39 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 10.191 -28.943 -6.336 31.332 hybrid contribution -1.387 -0.091 -0.186 1.403 sum 8.803 -29.035 -6.521 31.033 Atomic orbital electron populations 1.69821 1.06660 1.25971 1.59733 1.25585 0.96399 1.01187 1.03971 0.85132 0.77721 0.79478 0.77388 1.21457 1.22401 1.19292 1.19670 0.91567 0.85423 1.40813 0.90483 1.42596 1.05681 1.01277 1.89308 1.20857 0.93611 0.84378 0.97786 1.21979 0.96972 0.94220 0.97777 0.91447 1.22003 0.99738 0.95591 0.97242 1.22465 1.00740 0.94107 0.99038 1.21777 0.95051 0.83782 0.95029 0.89806 1.45790 1.14521 1.10657 1.64474 1.17144 0.85692 0.82187 0.77314 1.90838 1.17018 1.84432 1.52594 1.24432 1.01589 0.98589 1.16205 1.20545 1.01541 0.90415 0.96708 1.19514 0.94312 0.89282 1.08756 1.98380 1.91592 1.19057 1.92980 1.25704 1.00873 1.02671 1.06723 1.82910 1.01935 1.03176 1.52769 1.22653 0.97635 0.91626 1.02509 0.94121 0.79514 0.96003 0.95653 0.92286 0.93428 0.90682 0.92410 0.75119 0.83133 0.77558 0.89237 0.88703 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -59.87 13.06 21.65 0.28 -59.59 16 2 C -0.08 -4.58 5.50 84.86 0.47 -4.11 16 3 Si 0.97 46.07 29.55 68.60 2.03 48.09 16 4 H -0.29 -13.35 7.11 99.48 0.71 -12.64 16 5 H -0.30 -14.22 7.11 99.48 0.71 -13.52 16 6 H -0.27 -11.91 7.11 99.48 0.71 -11.20 16 7 C -0.24 -13.49 9.99 84.03 0.84 -12.65 16 8 H 0.08 4.07 7.83 -2.91 -0.02 4.05 16 9 N -0.75 -37.53 5.44 -343.43 -1.87 -39.40 16 10 C 0.16 6.03 5.57 86.38 0.48 6.51 16 11 C -0.09 -2.69 2.93 -9.72 -0.03 -2.72 16 12 H 0.07 2.17 8.14 -2.39 -0.02 2.15 16 13 C -0.11 -3.26 6.05 31.32 0.19 -3.07 16 14 C -0.12 -3.12 6.53 31.32 0.20 -2.92 16 15 C 0.15 3.25 3.16 46.06 0.15 3.40 16 16 H 0.08 2.12 7.66 -2.39 -0.02 2.11 16 17 N -0.70 -12.66 5.11 -441.55 -2.26 -14.92 16 18 C 0.59 13.20 7.78 86.42 0.67 13.87 16 19 O -0.57 -17.66 16.55 -4.35 -0.07 -17.73 16 20 C -0.29 -4.85 6.45 24.08 0.16 -4.69 16 21 C -0.06 -1.02 9.89 21.74 0.21 -0.80 16 22 C -0.08 -1.09 6.25 21.11 0.13 -0.96 16 23 Cl -0.05 -0.68 29.10 -2.72 -0.08 -0.76 16 24 C -0.22 -1.96 10.78 66.83 0.72 -1.24 16 25 S 0.32 2.69 22.15 -56.49 -1.25 1.44 16 26 C -0.11 -2.19 5.92 31.88 0.19 -2.00 16 27 H 0.25 14.97 8.31 -92.71 -0.77 14.20 16 28 H 0.37 20.17 7.52 -92.71 -0.70 19.47 16 29 H 0.02 0.82 8.14 -2.38 -0.02 0.80 16 30 H 0.03 0.94 8.05 -2.39 -0.02 0.92 16 31 H 0.06 1.93 7.77 -2.39 -0.02 1.91 16 32 H 0.05 1.61 8.14 -2.38 -0.02 1.59 16 33 H 0.07 1.72 8.04 -2.39 -0.02 1.70 16 34 H 0.06 1.57 8.14 -2.38 -0.02 1.55 16 35 H 0.41 4.84 7.64 -92.71 -0.71 4.13 16 36 H 0.15 2.90 8.06 -2.91 -0.02 2.88 16 37 H 0.21 0.69 8.06 -2.91 -0.02 0.67 16 38 H 0.09 1.63 8.14 -2.39 -0.02 1.61 16 39 H 0.09 1.62 7.94 -2.39 -0.02 1.60 16 Total: -1.00 -71.13 356.67 0.85 -70.28 By element: Atomic # 1 Polarization: 24.28 SS G_CDS: -0.32 Total: 23.96 kcal Atomic # 6 Polarization: -15.77 SS G_CDS: 4.38 Total: -11.38 kcal Atomic # 7 Polarization: -110.07 SS G_CDS: -3.84 Total: -113.91 kcal Atomic # 8 Polarization: -17.66 SS G_CDS: -0.07 Total: -17.73 kcal Atomic # 14 Polarization: 46.07 SS G_CDS: 2.03 Total: 48.09 kcal Atomic # 16 Polarization: 2.69 SS G_CDS: -1.25 Total: 1.44 kcal Atomic # 17 Polarization: -0.68 SS G_CDS: -0.08 Total: -0.76 kcal Total: -71.13 0.85 -70.28 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755743270.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.900 kcal (2) G-P(sol) polarization free energy of solvation -71.125 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.225 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.848 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.278 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.377 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds