Wall clock time and date at job start Tue Mar 31 2020 15:46:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86800 * 120.00259 * 2 1 4 4 H 1.48501 * 109.47055 * 0.02562 * 3 2 1 5 5 H 1.48505 * 109.46653 * 119.99764 * 3 2 1 6 6 H 1.48495 * 109.47483 * 240.00126 * 3 2 1 7 7 C 1.38816 * 119.99569 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99460 * 180.02562 * 7 2 1 9 9 N 1.36935 * 120.00401 * 0.02562 * 7 2 1 10 10 C 1.46490 * 120.00121 * 180.02562 * 9 7 2 11 11 C 1.53001 * 109.47264 * 179.97438 * 10 9 7 12 12 H 1.08999 * 110.67279 * 51.76463 * 11 10 9 13 13 C 1.54889 * 110.75493 * 288.32759 * 11 10 9 14 14 C 1.54267 * 104.19467 * 203.73936 * 13 11 10 15 15 C 1.53882 * 106.59905 * 23.60979 * 14 13 11 16 16 H 1.08995 * 110.03267 * 240.71710 * 15 14 13 17 17 N 1.46496 * 110.07309 * 119.30308 * 15 14 13 18 18 C 1.34783 * 119.99709 * 87.81040 * 17 15 14 19 19 O 1.21698 * 119.99930 * 359.97438 * 18 17 15 20 20 C 1.46574 * 119.99849 * 180.02562 * 18 17 15 21 21 C 1.36675 * 125.44981 * 179.71784 * 20 18 17 22 22 C 1.37533 * 113.28536 * 179.83679 * 21 20 18 23 23 Cl 1.73598 * 122.46081 * 180.22348 * 22 21 20 24 24 C 1.33875 * 115.07892 * 0.46017 * 22 21 20 25 25 S 1.70614 * 110.96126 * 359.74248 * 24 22 21 26 26 C 1.54271 * 106.59787 * 0.02562 * 15 14 13 27 27 H 0.97001 * 119.99885 * 179.97438 * 1 2 3 28 28 H 0.97000 * 119.99302 * 359.97438 * 9 7 2 29 29 H 1.09003 * 109.47433 * 299.99456 * 10 9 7 30 30 H 1.08999 * 109.47686 * 59.99159 * 10 9 7 31 31 H 1.08991 * 110.48509 * 322.41625 * 13 11 10 32 32 H 1.09000 * 110.48667 * 85.06464 * 13 11 10 33 33 H 1.09004 * 110.03497 * 264.33095 * 14 13 11 34 34 H 1.09002 * 110.07586 * 142.91642 * 14 13 11 35 35 H 0.97005 * 120.00517 * 267.81603 * 17 15 14 36 36 H 1.07999 * 123.35919 * 0.02562 * 21 20 18 37 37 H 1.08007 * 124.52297 * 179.72887 * 24 22 21 38 38 H 1.08998 * 110.48457 * 217.71095 * 26 15 14 39 39 H 1.08995 * 110.59975 * 95.12098 * 26 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 1.2853 2.7465 0.0006 5 1 3.1040 1.6962 1.2126 6 1 3.1040 1.6964 -1.2124 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0001 9 7 1.3256 -2.3881 -0.0016 10 6 2.0580 -3.6568 -0.0016 11 6 1.0637 -4.8197 -0.0022 12 1 0.3343 -4.7019 -0.8035 13 6 0.3603 -4.9413 1.3724 14 6 -0.0929 -6.4144 1.4364 15 6 0.8249 -7.1986 0.4821 16 1 0.2332 -7.6652 -0.3055 17 7 1.5666 -8.2207 1.2245 18 6 1.0296 -9.4434 1.4074 19 8 -0.0715 -9.6980 0.9562 20 6 1.7715 -10.4659 2.1507 21 6 1.3329 -11.7350 2.4058 22 6 2.2335 -12.4876 3.1228 23 17 1.9215 -14.1350 3.5727 24 6 3.3663 -11.8550 3.4525 25 16 3.3649 -10.2538 2.8633 26 6 1.8042 -6.1746 -0.1281 27 1 -0.4850 -0.8401 -0.0004 28 1 0.3556 -2.3880 -0.0016 29 1 2.6853 -3.7142 -0.8912 30 1 2.6841 -3.7150 0.8887 31 1 1.0594 -4.7218 2.1793 32 1 -0.5008 -4.2748 1.4205 33 1 -1.1299 -6.5006 1.1119 34 1 0.0129 -6.7946 2.4525 35 1 2.4442 -8.0176 1.5846 36 1 0.3760 -12.1104 2.0747 37 1 4.1735 -12.2989 4.0164 38 1 1.9965 -6.4080 -1.1753 39 1 2.7373 -6.1539 0.4348 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001755743272.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:46:26 Heat of formation + Delta-G solvation = -10.978062 kcal Electronic energy + Delta-G solvation = -22175.732106 eV Core-core repulsion = 18656.482695 eV Total energy + Delta-G solvation = -3519.249411 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 328.075 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.32649 -38.75960 -37.92317 -36.44573 -35.08682 -33.69721 -31.27376 -30.31742 -28.79437 -27.79075 -25.50106 -24.11332 -22.43265 -22.13985 -20.60308 -19.78835 -19.72104 -18.96402 -17.22257 -16.87467 -16.51621 -15.96097 -15.66208 -15.14080 -14.79965 -14.19089 -14.01416 -13.75136 -13.71098 -13.48138 -13.34808 -13.26141 -13.13455 -12.29645 -11.97459 -11.87068 -11.74575 -11.69561 -11.37218 -10.97996 -10.79728 -10.66753 -10.56024 -10.36962 -10.35361 -10.27526 -9.97025 -9.56288 -9.29466 -9.15188 -9.01870 -8.86761 -6.98663 -6.09467 -3.08695 -0.13331 0.67588 1.00892 1.63187 1.98699 2.78731 2.81375 3.51560 3.55302 3.72902 4.22180 4.43689 4.58536 4.62632 4.65107 4.71843 4.93211 5.06650 5.32489 5.35047 5.47214 5.50589 5.53129 5.55576 5.63947 5.73462 5.79641 5.93419 6.03102 6.06684 6.19926 6.31414 6.45630 6.46597 6.70681 6.82697 7.12224 7.81177 7.81670 8.77080 9.24937 10.11287 10.26549 11.39222 Molecular weight = 328.08amu Principal moments of inertia in cm(-1) A = 0.035085 B = 0.001931 C = 0.001870 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 797.860657 B =14497.577967 C =14965.999187 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.944 5.944 2 C -0.047 4.047 3 Si 1.080 2.920 4 H -0.285 1.285 5 H -0.296 1.296 6 H -0.295 1.295 7 C -0.331 4.331 8 H 0.063 0.937 9 N -0.743 5.743 10 C 0.167 3.833 11 C -0.097 4.097 12 H 0.079 0.921 13 C -0.112 4.112 14 C -0.134 4.134 15 C 0.142 3.858 16 H 0.095 0.905 17 N -0.716 5.716 18 C 0.590 3.410 19 O -0.523 6.523 20 C -0.255 4.255 21 C -0.052 4.052 22 C -0.060 4.060 23 Cl -0.045 7.045 24 C -0.232 4.232 25 S 0.254 5.746 26 C -0.121 4.121 27 H 0.255 0.745 28 H 0.367 0.633 29 H 0.018 0.982 30 H 0.019 0.981 31 H 0.067 0.933 32 H 0.069 0.931 33 H 0.070 0.930 34 H 0.065 0.935 35 H 0.397 0.603 36 H 0.164 0.836 37 H 0.181 0.819 38 H 0.074 0.926 39 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.465 -27.625 7.198 29.507 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.590 5.590 2 C -0.244 4.244 3 Si 0.911 3.089 4 H -0.210 1.210 5 H -0.223 1.223 6 H -0.223 1.223 7 C -0.462 4.462 8 H 0.081 0.919 9 N -0.388 5.388 10 C 0.040 3.960 11 C -0.116 4.116 12 H 0.097 0.903 13 C -0.150 4.150 14 C -0.173 4.173 15 C 0.038 3.962 16 H 0.113 0.887 17 N -0.367 5.367 18 C 0.375 3.625 19 O -0.400 6.400 20 C -0.376 4.376 21 C -0.085 4.085 22 C -0.100 4.100 23 Cl -0.017 7.017 24 C -0.371 4.371 25 S 0.521 5.479 26 C -0.160 4.160 27 H 0.066 0.934 28 H 0.200 0.800 29 H 0.036 0.964 30 H 0.037 0.963 31 H 0.086 0.914 32 H 0.088 0.912 33 H 0.089 0.911 34 H 0.084 0.916 35 H 0.231 0.769 36 H 0.182 0.818 37 H 0.198 0.802 38 H 0.092 0.908 39 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 7.768 -25.068 6.975 27.155 hybrid contribution -0.541 -3.146 0.315 3.207 sum 7.227 -28.213 7.291 30.023 Atomic orbital electron populations 1.70883 1.06016 1.28391 1.53688 1.25781 0.97086 1.01002 1.00556 0.83238 0.74203 0.75629 0.75817 1.21033 1.22311 1.22298 1.20027 0.91987 0.85904 1.48310 0.91861 1.42346 1.04890 1.00913 1.90689 1.20563 0.92904 0.84794 0.97751 1.22298 0.97980 0.93644 0.97726 0.90299 1.22357 1.00637 0.94633 0.97368 1.22601 0.99492 0.95837 0.99334 1.21800 0.93209 0.87316 0.93859 0.88729 1.46112 1.21683 1.11983 1.56906 1.16839 0.85213 0.81194 0.79277 1.90858 1.19427 1.80103 1.49654 1.24623 1.01308 0.99725 1.11987 1.20529 1.00665 0.91184 0.96167 1.19557 0.96037 0.89237 1.05209 1.98384 1.95699 1.16156 1.91420 1.25284 1.02850 1.00578 1.08344 1.83215 1.11991 1.07096 1.45636 1.22638 0.98035 0.94190 1.01111 0.93416 0.79984 0.96382 0.96294 0.91428 0.91212 0.91101 0.91620 0.76854 0.81830 0.80183 0.90763 0.90834 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -29.30 13.70 55.49 0.76 -28.54 16 2 C -0.05 -1.37 5.50 -17.43 -0.10 -1.46 16 3 Si 1.08 25.94 29.92 -169.99 -5.09 20.85 16 4 H -0.28 -6.94 7.11 56.52 0.40 -6.54 16 5 H -0.30 -6.76 7.11 56.52 0.40 -6.36 16 6 H -0.30 -6.77 7.11 56.52 0.40 -6.37 16 7 C -0.33 -9.39 9.99 -15.06 -0.15 -9.54 16 8 H 0.06 1.76 7.83 -52.49 -0.41 1.35 16 9 N -0.74 -18.60 5.52 -59.91 -0.33 -18.93 16 10 C 0.17 3.28 5.70 -4.05 -0.02 3.25 16 11 C -0.10 -1.47 2.91 -88.61 -0.26 -1.73 16 12 H 0.08 1.26 8.14 -51.93 -0.42 0.83 16 13 C -0.11 -1.63 6.20 -25.07 -0.16 -1.79 16 14 C -0.13 -1.67 6.59 -25.61 -0.17 -1.84 16 15 C 0.14 1.63 3.24 -66.81 -0.22 1.42 16 16 H 0.09 1.19 7.56 -51.93 -0.39 0.79 16 17 N -0.72 -7.18 4.98 -54.06 -0.27 -7.45 16 18 C 0.59 6.80 7.78 -12.90 -0.10 6.70 16 19 O -0.52 -7.88 16.49 5.19 0.09 -7.80 16 20 C -0.26 -2.34 6.45 -36.79 -0.24 -2.58 16 21 C -0.05 -0.47 9.89 -40.40 -0.40 -0.87 16 22 C -0.06 -0.47 6.25 -41.37 -0.26 -0.72 16 23 Cl -0.04 -0.34 29.10 -51.86 -1.51 -1.85 16 24 C -0.23 -1.42 10.77 29.20 0.31 -1.10 16 25 S 0.25 1.52 22.15 -107.50 -2.38 -0.86 16 26 C -0.12 -1.41 5.97 -25.05 -0.15 -1.56 16 27 H 0.25 7.77 6.77 -40.82 -0.28 7.49 16 28 H 0.37 9.39 6.50 -40.82 -0.27 9.12 16 29 H 0.02 0.37 8.14 -51.93 -0.42 -0.06 16 30 H 0.02 0.38 7.99 -51.93 -0.41 -0.04 16 31 H 0.07 1.01 7.93 -51.93 -0.41 0.60 16 32 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 33 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 34 H 0.07 0.80 7.92 -51.93 -0.41 0.39 16 35 H 0.40 3.08 7.47 -40.82 -0.31 2.78 16 36 H 0.16 1.48 8.06 -52.49 -0.42 1.06 16 37 H 0.18 0.70 8.06 -52.48 -0.42 0.28 16 38 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 39 H 0.07 0.77 7.65 -51.93 -0.40 0.38 16 LS Contribution 354.89 15.07 5.35 5.35 Total: -1.00 -33.47 354.89 -10.32 -43.79 By element: Atomic # 1 Polarization: 12.30 SS G_CDS: -5.04 Total: 7.26 kcal Atomic # 6 Polarization: -9.92 SS G_CDS: -1.90 Total: -11.82 kcal Atomic # 7 Polarization: -55.08 SS G_CDS: 0.16 Total: -54.92 kcal Atomic # 8 Polarization: -7.88 SS G_CDS: 0.09 Total: -7.80 kcal Atomic # 14 Polarization: 25.94 SS G_CDS: -5.09 Total: 20.85 kcal Atomic # 16 Polarization: 1.52 SS G_CDS: -2.38 Total: -0.86 kcal Atomic # 17 Polarization: -0.34 SS G_CDS: -1.51 Total: -1.85 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -33.47 -10.32 -43.79 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755743272.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.811 kcal (2) G-P(sol) polarization free energy of solvation -33.467 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.656 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.322 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.789 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.978 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds