Wall clock time and date at job start Tue Mar 31 2020 15:46:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86800 * 120.00259 * 2 1 4 4 H 1.48501 * 109.47055 * 0.02562 * 3 2 1 5 5 H 1.48505 * 109.46653 * 119.99764 * 3 2 1 6 6 H 1.48495 * 109.47483 * 240.00126 * 3 2 1 7 7 C 1.38816 * 119.99569 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99460 * 180.02562 * 7 2 1 9 9 N 1.36935 * 120.00401 * 0.02562 * 7 2 1 10 10 C 1.46490 * 120.00121 * 180.02562 * 9 7 2 11 11 C 1.53001 * 109.47264 * 179.97438 * 10 9 7 12 12 H 1.08999 * 110.67279 * 51.76463 * 11 10 9 13 13 C 1.54889 * 110.75493 * 288.32759 * 11 10 9 14 14 C 1.54267 * 104.19467 * 203.73936 * 13 11 10 15 15 C 1.53882 * 106.59905 * 23.60979 * 14 13 11 16 16 H 1.08995 * 110.03267 * 240.71710 * 15 14 13 17 17 N 1.46496 * 110.07309 * 119.30308 * 15 14 13 18 18 C 1.34783 * 119.99709 * 87.81040 * 17 15 14 19 19 O 1.21698 * 119.99930 * 359.97438 * 18 17 15 20 20 C 1.46574 * 119.99849 * 180.02562 * 18 17 15 21 21 C 1.36675 * 125.44981 * 179.71784 * 20 18 17 22 22 C 1.37533 * 113.28536 * 179.83679 * 21 20 18 23 23 Cl 1.73598 * 122.46081 * 180.22348 * 22 21 20 24 24 C 1.33875 * 115.07892 * 0.46017 * 22 21 20 25 25 S 1.70614 * 110.96126 * 359.74248 * 24 22 21 26 26 C 1.54271 * 106.59787 * 0.02562 * 15 14 13 27 27 H 0.97001 * 119.99885 * 179.97438 * 1 2 3 28 28 H 0.97000 * 119.99302 * 359.97438 * 9 7 2 29 29 H 1.09003 * 109.47433 * 299.99456 * 10 9 7 30 30 H 1.08999 * 109.47686 * 59.99159 * 10 9 7 31 31 H 1.08991 * 110.48509 * 322.41625 * 13 11 10 32 32 H 1.09000 * 110.48667 * 85.06464 * 13 11 10 33 33 H 1.09004 * 110.03497 * 264.33095 * 14 13 11 34 34 H 1.09002 * 110.07586 * 142.91642 * 14 13 11 35 35 H 0.97005 * 120.00517 * 267.81603 * 17 15 14 36 36 H 1.07999 * 123.35919 * 0.02562 * 21 20 18 37 37 H 1.08007 * 124.52297 * 179.72887 * 24 22 21 38 38 H 1.08998 * 110.48457 * 217.71095 * 26 15 14 39 39 H 1.08995 * 110.59975 * 95.12098 * 26 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 1.2853 2.7465 0.0006 5 1 3.1040 1.6962 1.2126 6 1 3.1040 1.6964 -1.2124 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0001 9 7 1.3256 -2.3881 -0.0016 10 6 2.0580 -3.6568 -0.0016 11 6 1.0637 -4.8197 -0.0022 12 1 0.3343 -4.7019 -0.8035 13 6 0.3603 -4.9413 1.3724 14 6 -0.0929 -6.4144 1.4364 15 6 0.8249 -7.1986 0.4821 16 1 0.2332 -7.6652 -0.3055 17 7 1.5666 -8.2207 1.2245 18 6 1.0296 -9.4434 1.4074 19 8 -0.0715 -9.6980 0.9562 20 6 1.7715 -10.4659 2.1507 21 6 1.3329 -11.7350 2.4058 22 6 2.2335 -12.4876 3.1228 23 17 1.9215 -14.1350 3.5727 24 6 3.3663 -11.8550 3.4525 25 16 3.3649 -10.2538 2.8633 26 6 1.8042 -6.1746 -0.1281 27 1 -0.4850 -0.8401 -0.0004 28 1 0.3556 -2.3880 -0.0016 29 1 2.6853 -3.7142 -0.8912 30 1 2.6841 -3.7150 0.8887 31 1 1.0594 -4.7218 2.1793 32 1 -0.5008 -4.2748 1.4205 33 1 -1.1299 -6.5006 1.1119 34 1 0.0129 -6.7946 2.4525 35 1 2.4442 -8.0176 1.5846 36 1 0.3760 -12.1104 2.0747 37 1 4.1735 -12.2989 4.0164 38 1 1.9965 -6.4080 -1.1753 39 1 2.7373 -6.1539 0.4348 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001755743272.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:46:25 Heat of formation + Delta-G solvation = -32.111638 kcal Electronic energy + Delta-G solvation = -22176.648527 eV Core-core repulsion = 18656.482695 eV Total energy + Delta-G solvation = -3520.165831 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 328.075 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.23924 -39.60034 -38.83034 -37.05678 -36.73226 -35.01541 -32.96594 -31.12331 -30.08171 -28.96895 -26.42728 -25.69551 -24.19779 -22.93796 -21.63364 -20.88356 -20.48455 -19.75697 -19.26792 -17.69359 -17.33559 -16.89917 -16.75642 -16.32464 -16.03060 -15.69376 -15.13209 -15.06874 -14.87119 -14.69935 -14.31217 -14.27633 -13.91335 -13.63144 -12.98218 -12.86517 -12.67688 -12.56966 -12.46978 -12.42761 -12.09136 -11.93722 -11.87818 -11.81606 -11.71044 -11.54264 -11.30186 -11.18366 -10.89177 -10.35085 -10.03215 -9.53651 -9.08195 -8.38513 -5.31778 -0.74526 0.15768 0.42322 0.99862 1.43162 1.59409 1.69662 1.85962 1.96406 1.98516 2.73149 3.40614 3.44310 3.50509 3.63212 3.81107 3.90684 4.00042 4.07762 4.32272 4.41151 4.43176 4.48030 4.52114 4.55441 4.68123 4.79676 4.84412 4.87127 4.93887 5.02724 5.07536 5.13243 5.27063 5.43259 5.47540 5.60407 6.31722 6.50850 6.98493 7.11871 8.02999 8.13777 9.13628 Molecular weight = 328.08amu Principal moments of inertia in cm(-1) A = 0.035085 B = 0.001931 C = 0.001870 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 797.860657 B =14497.577967 C =14965.999187 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.976 5.976 2 C -0.108 4.108 3 Si 1.129 2.871 4 H -0.294 1.294 5 H -0.276 1.276 6 H -0.277 1.277 7 C -0.334 4.334 8 H 0.067 0.933 9 N -0.757 5.757 10 C 0.166 3.834 11 C -0.092 4.092 12 H 0.068 0.932 13 C -0.107 4.107 14 C -0.125 4.125 15 C 0.149 3.851 16 H 0.086 0.914 17 N -0.705 5.705 18 C 0.590 3.410 19 O -0.567 6.567 20 C -0.288 4.288 21 C -0.057 4.057 22 C -0.079 4.079 23 Cl -0.047 7.047 24 C -0.220 4.220 25 S 0.320 5.680 26 C -0.107 4.107 27 H 0.243 0.757 28 H 0.360 0.640 29 H 0.019 0.981 30 H 0.024 0.976 31 H 0.065 0.935 32 H 0.047 0.953 33 H 0.065 0.935 34 H 0.071 0.929 35 H 0.410 0.590 36 H 0.152 0.848 37 H 0.207 0.793 38 H 0.087 0.913 39 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.228 -28.495 7.974 31.307 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.624 5.624 2 C -0.299 4.299 3 Si 0.953 3.047 4 H -0.221 1.221 5 H -0.202 1.202 6 H -0.203 1.203 7 C -0.465 4.465 8 H 0.085 0.915 9 N -0.402 5.402 10 C 0.040 3.960 11 C -0.111 4.111 12 H 0.086 0.914 13 C -0.145 4.145 14 C -0.164 4.164 15 C 0.045 3.955 16 H 0.104 0.896 17 N -0.357 5.357 18 C 0.377 3.623 19 O -0.448 6.448 20 C -0.409 4.409 21 C -0.091 4.091 22 C -0.118 4.118 23 Cl -0.019 7.019 24 C -0.359 4.359 25 S 0.588 5.412 26 C -0.146 4.146 27 H 0.054 0.946 28 H 0.192 0.808 29 H 0.037 0.963 30 H 0.042 0.958 31 H 0.084 0.916 32 H 0.066 0.934 33 H 0.084 0.916 34 H 0.090 0.910 35 H 0.247 0.753 36 H 0.170 0.830 37 H 0.224 0.776 38 H 0.105 0.895 39 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 10.594 -25.979 7.762 29.110 hybrid contribution -1.320 -2.944 0.114 3.228 sum 9.274 -28.923 7.876 31.378 Atomic orbital electron populations 1.70996 1.07204 1.27835 1.56408 1.27248 0.97151 1.04790 1.00700 0.82619 0.73358 0.71504 0.77194 1.22050 1.20247 1.20337 1.20414 0.92429 0.87205 1.46481 0.91454 1.42595 1.04842 1.02090 1.90637 1.20744 0.93581 0.84071 0.97645 1.22165 0.97248 0.94005 0.97721 0.91359 1.22267 0.99702 0.95602 0.96967 1.22507 0.99482 0.94444 0.99986 1.21576 0.93062 0.87405 0.93466 0.89622 1.45942 1.22034 1.11271 1.56414 1.17132 0.84765 0.81658 0.78723 1.90832 1.21455 1.80914 1.51601 1.24435 1.03594 0.99257 1.13566 1.20549 1.00661 0.91531 0.96342 1.19517 0.96611 0.89387 1.06321 1.98380 1.95804 1.16272 1.91461 1.25702 1.02635 1.00705 1.06858 1.82968 1.08622 1.06142 1.43507 1.22540 0.98175 0.91498 1.02371 0.94643 0.80816 0.96278 0.95789 0.91593 0.93388 0.91649 0.91040 0.75269 0.83015 0.77560 0.89484 0.88909 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.98 -61.62 13.70 21.65 0.30 -61.32 16 2 C -0.11 -6.30 5.50 84.86 0.47 -5.84 16 3 Si 1.13 51.81 29.92 68.60 2.05 53.87 16 4 H -0.29 -13.87 7.11 99.48 0.71 -13.16 16 5 H -0.28 -11.71 7.11 99.48 0.71 -11.00 16 6 H -0.28 -11.79 7.11 99.48 0.71 -11.08 16 7 C -0.33 -18.84 9.99 84.03 0.84 -18.00 16 8 H 0.07 3.67 7.83 -2.91 -0.02 3.65 16 9 N -0.76 -38.14 5.52 -343.47 -1.90 -40.04 16 10 C 0.17 6.34 5.70 86.38 0.49 6.83 16 11 C -0.09 -2.73 2.91 -9.49 -0.03 -2.76 16 12 H 0.07 2.18 8.14 -2.39 -0.02 2.16 16 13 C -0.11 -3.10 6.20 31.67 0.20 -2.91 16 14 C -0.13 -3.06 6.59 31.32 0.21 -2.85 16 15 C 0.15 3.24 3.24 45.72 0.15 3.39 16 16 H 0.09 2.09 7.56 -2.39 -0.02 2.07 16 17 N -0.71 -12.87 4.98 -443.15 -2.21 -15.08 16 18 C 0.59 13.16 7.78 86.42 0.67 13.84 16 19 O -0.57 -17.35 16.49 -4.34 -0.07 -17.42 16 20 C -0.29 -4.90 6.45 24.08 0.16 -4.74 16 21 C -0.06 -0.99 9.89 21.74 0.22 -0.78 16 22 C -0.08 -1.10 6.25 21.11 0.13 -0.97 16 23 Cl -0.05 -0.66 29.10 -2.72 -0.08 -0.74 16 24 C -0.22 -2.03 10.77 66.83 0.72 -1.31 16 25 S 0.32 2.84 22.15 -56.49 -1.25 1.59 16 26 C -0.11 -2.26 5.97 31.68 0.19 -2.07 16 27 H 0.24 15.31 6.77 -92.71 -0.63 14.69 16 28 H 0.36 18.92 6.50 -92.71 -0.60 18.32 16 29 H 0.02 0.74 8.14 -2.39 -0.02 0.72 16 30 H 0.02 0.91 7.99 -2.39 -0.02 0.89 16 31 H 0.07 1.92 7.93 -2.39 -0.02 1.90 16 32 H 0.05 1.58 8.14 -2.39 -0.02 1.56 16 33 H 0.06 1.68 8.14 -2.39 -0.02 1.66 16 34 H 0.07 1.67 7.92 -2.39 -0.02 1.65 16 35 H 0.41 5.18 7.47 -92.70 -0.69 4.49 16 36 H 0.15 2.88 8.06 -2.91 -0.02 2.86 16 37 H 0.21 0.77 8.06 -2.91 -0.02 0.74 16 38 H 0.09 1.68 8.14 -2.39 -0.02 1.66 16 39 H 0.09 1.63 7.65 -2.39 -0.02 1.61 16 Total: -1.00 -73.12 354.89 1.19 -71.93 By element: Atomic # 1 Polarization: 25.44 SS G_CDS: -0.06 Total: 25.38 kcal Atomic # 6 Polarization: -22.57 SS G_CDS: 4.41 Total: -18.16 kcal Atomic # 7 Polarization: -112.64 SS G_CDS: -3.81 Total: -116.44 kcal Atomic # 8 Polarization: -17.35 SS G_CDS: -0.07 Total: -17.42 kcal Atomic # 14 Polarization: 51.81 SS G_CDS: 2.05 Total: 53.87 kcal Atomic # 16 Polarization: 2.84 SS G_CDS: -1.25 Total: 1.59 kcal Atomic # 17 Polarization: -0.66 SS G_CDS: -0.08 Total: -0.74 kcal Total: -73.12 1.19 -71.93 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755743272.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.821 kcal (2) G-P(sol) polarization free energy of solvation -73.119 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.298 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.186 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.933 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.112 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds